Taghvaei, S., Sabouni, F., & Minuchehr, Z. (2022). Identification of Natural Products as SENP2 Inhibitors for Targeted Therapy in Heart Failure. Front Pharmacol, 13, 817990. doi:10.3389/fphar.2022.817990

Taghvaei, S., Minuchehr, Z., & Sabouni, F. (2022). Computational drug repurposing of bethanidine for SENP1 inhibition in cardiovascular diseases treatment. Life Sci, 292, 120122. doi:10.1016/j.lfs.2021.120122

Asghari Alashti, F., Goliaei, B., & Minuchehr, Z. (2022). Analyzing large scale gene expression data in colorectal cancer reveals important clues; CLCA1 and SELENBP1 downregulated in CRC not in normal and not in adenoma. Am J Cancer Res, 12(1), 371-380

Taghvaei, S., Sabouni, F., Minuchehr, Z., & Taghvaei, A. (2021). Identification of novel anti-cancer agents, applying in silico method for SENP1 protease inhibition. J Biomol Struct Dyn, 1-15. doi:10.1080/07391102.2021.1880480

Taghvaei, S., Sabouni, F., & Minuchehr, Z. (2021). Evidence of Omics, Immune Infiltration, and Pharmacogenomic for SENP1 in the Pan-Cancer Cohort. Front Pharmacol, 12, 700454. doi:10.3389/fphar.2021.700454

Moradifard, S., Minuchehr, Z., & Ganji, S. M. (2021). An investigation on the c-MYC, AXIN1, and COL11A1 gene expression in colorectal cancer. Biotechnol Appl Biochem. doi:10.1002/bab.2229

Bahadori, Z., Shabani, A. A., & Minuchehr, Z.

 (2021). Rational design of hyper-glycosylated human follicle-stimulating hormone analogs (a bioinformatics approach). J Biomol Struct Dyn, 1-12. doi:10.1080/07391102.2021.1924268

Ahmadi, H., Nayeri, Z., Minuchehr, Z., Sabouni, F., & Mohammadi, M. (2020). Betanin purification from red beetroots and evaluation of its anti-oxidant and anti-inflammatory activity on LPS-activated microglial cells. PLoS One, 15(5), e0233088. doi:10.1371/journal.pone.0233088

Afzali, F., Minuchehr, Z., Jahangiri, S., & Ranjbar, M. M. (2020). Immunopeptidome screening to design An immunogenic construct against PRAME positive breast cancer; An in silico study. Comput Biol Chem, 85, 107231. doi:10.1016/j.compbiolchem.2020.107231

Shafaghi, M., Shabani, A. A., & Minuchehr, Z. (2019). Rational design of hyper-glycosylated human luteinizing hormone analogs (a bioinformatics approach). Comput Biol Chem, 79, 16-23. doi:10.1016/j.compbiolchem.2019.01.002

Mehmankhah, M., Bhat, R., Anvar, M. S., Ali, S., Alam, A., Farooqui, A.  . . . & Minuchehr, Z., Kazim, S. N. (2019). Structure-Guided Approach to Identify Potential Inhibitors of Large Envelope Protein to Prevent Hepatitis B Virus Infection. Oxid Med Cell Longev, 2019, 1297484. doi:10.1155/2019/1297484

Lari, N., Jalal, R., Minuchehr, Z., & Rajabian Noghondar, M. (2019). Identifying miltefosine-resistant key genes in protein-protein interactions network and experimental verification in Iranian Leishmania major. Mol Biol Rep, 46(5), 5371-5388. doi:10.1007/s11033-019-04992-4

Saberi anvar, M., Minuchehr, Z., Shahlaei, M., & Kheitan, S. (2018). Gastric cancer biomarkers; A systems biology approach. Biochemistry and biophysics reports, 13, 141-146.

Moradifard, S., Hoseinbeyki, M., Ganji, S. M., & Minuchehr, Z. (2018). Analysis of microRNA and Gene Expression Profiles in Alzheimer's Disease: A Meta-Analysis Approach. Sci Rep, 8(1), 4767. doi:10.1038/s41598-018-20959-0

Samoudi, M., Minuchehr, Z., Harcum, S. W., Tabandeh, F., Omid Yeganeh, N., & Khodabandeh, M. (2017). Rational design of glycoengineered interferon-beta analogs with improved aggregation state: experimental validation. Protein Eng Des Sel, 30(1), 23-30. doi:10.1093/protein/gzw058

Kheitan, S., Minuchehr, Z., & Soheili, Z. S. (2017). Exploring the cross talk between ER stress and inflammation in age-related macular degeneration. PLoS One, 12(7), e0181667. doi:10.1371/journal.pone.0181667

Bahramali, G., Goliaei, B., Minuchehr, Z., & Marashi, S. A. (2017). A network biology approach to understanding the importance of chameleon proteins in human physiology and pathology. Amino Acids, 49(2), 303-315. doi:10.1007/s00726-016-2361-6

Samoudi, M., Minuchehr, Z., Harcum, S., Tabandeh, F., Omid Yeganeh, N., & Khodabandeh, M. (2016). Rational design of glycoengineered interferon-β analogs with improved aggregation state: experimental validation. Protein Engineering, Design and Selection, 30(1), 23-30.

Bahramali, G., Goliaei, B., Minuchehr, Z., & Salari, A. (2016). Chameleon sequences in neurodegenerative diseases. Biochem Biophys Res Commun, 472(1), 209-216. doi:10.1016/j.bbrc.2016.01.187

Samoudi, M., Tabandeh, F., Minuchehr, Z., Ahangari Cohan, R., Nouri Inanlou, D., Khodabandeh, M., & Sabery Anvar, M. (2015). Rational design of hyper-glycosylated interferon beta analogs: a computational strategy for glycoengineering. J Mol Graph Model, 56, 31-42. doi:10.1016/j.jmgm.2014.12.001

Kheitan, S., Soheili, Z., & Minuchehr, Z. (2015). Construction and Validation of a Biological Network for GRP78 Protein and Inflammatory Factors. Genetics in the Third Millennium, 12(4), 3744-3753.

Jelokhani-Niaraki, S., Tahmoorespur, M., Minuchehr, Z., & Nassiri, M. (2015). An Ontology-Based GIS for Genomic Data Management of Rumen Microbes. Genomics Inform, 13(1), 7-14. doi:10.5808/GI.2015.13.1.7

Allahyari-Fard, N., Minuchehr, Z., & Rahgozar, M. (2015). Novel genetically modified foods and allergenicity assessment of them, case study: Tarom GM rice. Current Nutrition & Food Science, 11(1), 11-15.

Zare, M., Hadi, F., Minuchehr, Z., Amani, J., & Salmanian, A. (2014). Effects of missense R84Q mutation on human Pyrroline-5-carboxylate synthase enzyme properties, an in-silico analysis. Journal of Applied Biotechnology Reports, 1(1), 11-16.

Shahnazari, P., Sayehmiri, K., Minuchehr, Z., Parhizkar, A., Poustchi, H., Montazeri, G., & Mohamadkhani, A. (2014). The Increased Level of Serum p53 in Hepatitis B-Associated Liver Cirrhosis. Iran J Med Sci, 39(5), 446-451.

Reiisi, S., Sanati, M., Tabatabaiefar, M., PourJafari, H., Minuchehr, Z., Shavarzi, A., . . . Hashemzadeh-Chaleshtori, M. (2014). Study of the association of DFNB3 locus with autosomal recessive non-syndromic hearing loss in iranian deaf population using genetic linkage analysis. Journal of Isfahan Medical School, 32(285), 669-677.

Mansouri, S., Monajjemi, M., Aghaee, H., Zare, K., & Minuchehr, Z. (2013). Molecular dynamic study of human prion protein upon D178N mutation: new perspective to H-bonds, salt bridges and the critical amino acids. Protein Pept Lett, 20(7), 775-780. doi:10.2174/0929866511320070007

Asghari Alashti, F., & Minuchehr, Z. (2013). MiRNAs which target CD3 subunits could be potential biomarkers for cancers. PLoS One, 8(11), e78790. doi:10.1371/journal.pone.0078790

Allahyari-Fard, N., Minuchehr, Z., & Mousawi, A. (2013). Allergenicity study of genetically modified herbicide resistant crops (Bioinformatics Assessment). Bull. Env. Pharmacol. Life Sci, 2(3), 24-32.

Akbarzadeh-Sharbaf, S., Yakhchali, B., Minuchehr, Z., Shokrgozar, M. A., & Zeinali, S. (2013). Expression Enhancement in Trastuzumab Therapeutic Monoclonal Antibody Production using Genomic Amplification with Methotrexate. Avicenna J Med Biotechnol, 5(2), 87-95.

Shokrgozar, Z., Tayebi, S., Minucheher, Z., & Mohamadkhani, A. (2012). Hepatitis B Virus Genome Asymmetry in Hepatocellular Carcinoma. Middle East Journal of Digestive Diseases, 4(3), 150.

Allahyari-Fard, N., Minuchehr, Z., & Mousavi, A. (2012). In Silico Analysis for Allergenicity Assessment of Novel Proteins of Genetically Modified Organisms. Genetics in the 3rd millennium, 10(3), 2846.

Akbarzadeh-Sharbaf, S., Yakhchali, B., Minuchehr, Z., Shokrgozar, M. A., & Zeinali, S. (2012). In silico design, construction and cloning of Trastuzumab humanized monoclonal antibody: A possible biosimilar for Herceptin. Adv Biomed Res, 1, 21. doi:10.4103/2277-9175.98122

Mohamadkhani, A., Shahnazari, P., Minuchehr, Z., Madadkar-Sobhani, A., Tehrani, M. J., Jazii, F. R., & Poustchi, H. (2011). Protein-x of hepatitis B virus in interaction with CCAAT/enhancer-binding protein alpha (C/EBPalpha)--an in silico analysis approach. Theor Biol Med Model, 8, 41. doi:10.1186/1742-4682-8-41

Farazmand, A., Yakhchali, B., Shariati, P., Minuchehr, Z., & Ofoghi, H. (2011). In silico genome-wide screening for TnrA-regulated genes of Bacillus clausii. Iran J Biotechnol.

Eskandari, V., Yakhchali, B., & Minuchehr, Z. (2010). In-silico prediction of permissive sites of CstH subunit of E. coli CS3 pili for insertion of foreign peptides. Iranian Journal of Biology.

Mohammadkhani, A., Minuchehr, Z., Madadkar-Sobhani, A., Sotoudeh, M., Jazii, F., & Malekzadeh, R. (2009). W1803 3D Structure of Protein-X of Hepatitis B Virus. Gastroenterology, 136(5), A-865.

Haji-Mohammadi, H., Minuchehr, Z., & Madadkar-Sobhani, A. (2009). In silico assessment shows that Iranian Bt rice is not allergenic. Journal of Biosafety, 1(2), 17-26.

Mohamadkhani, A., Minuchehr, Z., Sobhani, A., Sotoudeh, M., Poustchi, H., & Jazii, F. (2008). PP-010 3D structural and dynamic features of Protein-x of hepatitis B virus. International Journal of Infectious Diseases, 12, S58.

Mahdevar, G., Rahimi, A., & Minuchehr, Z. (2008). Predictionof location and type of B-turns of a protein using self organizing neural network. Journal of Science (University of Tehran, 34(3), 55.

Soheili, Z., Minuchehr, Z., Samiei, S., Ataei, Z., Kavari, M., & Talebian, A. (2006). The investigation of phosphatidylinositol 3-kinase (PI3K) isoforms which express by human prostate cancer cell lines, PC3 and DU145. Feyz Journals of Kashan University of Medical Sciences, 10(3).

Soheili, Z., & Minuchehr, Z. (2005). Molecular Motors. Modern Genetics, Winter (1), 9-25.

Minuchehr, Z., & Goliaei, B. (2005). Propensity of amino acids in loop regions connecting beta-strands. Protein Pept Lett, 12(4), 379. doi:10.2174/0929866053765617

Soheili, Z., & Minuchehr, Z. (2004). Bioinformatics and the Genome Project. Shargh(127), 15.

Minuchehr, Z., & Goliaei, B. (2004). Protein Databases. Iranian Journal of Pharmacology & Therapeutics (IJPT), 3(1), 1-11.

Minuchehr, Z., & Goliaei, B. (2003). High tendency for amino acid neighbors in alpha helices. Journal of the Iranian medical sciences. Autumn (35), 469.

Minuchehr, Z., & Goliaee, B. (2003). THE STUDY OF TENDENCY FOR AMINO ACID NEIGHBORS IN ALPHA HELICES. Razi Journal of Medical Sciences, 10(35), 469-475.

Goliaei, B., & Minuchehr, Z. (2003). Exceptional pairs of amino acid neighbors in alpha-helices. FEBS Lett, 537(1-3), 121-127. doi:10.1016/s0014-5793(03)00105-4

Minuchehr, Z., & Goliaei, B. (2000). Local propensity for different locations of an alpha-helix. BIOCHEMICAL SOCIETY TRANSACTIONS, 28(5), A147-A147.

Goliaei, B., & Minuchehr, Z. (1999). Inhibition and recovery of GM-CSF production in the lung after hyperthermia. Int J Hyperthermia, 15(6), 541-547.