National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Zambia 27894 A 2 2
1 Zambia 27895 T 2 2
2 Zambia 27896 G 2 2
3 Zambia 27897 A 2 2
4 Zambia 27898 A 2 2
5 Zambia 27899 A 2 2
6 Zambia 27900 T 2 2
7 Zambia 27901 T 2 2
8 Zambia 27902 T 2 2
9 Zambia 27903 C 2 2
10 Zambia 27904 T 2 2
11 Zambia 27905 T 2 2
12 Zambia 27906 G 2 2
13 Zambia 27907 T 2 2
14 Zambia 27908 T 2 2
15 Zambia 27909 T 2 2
16 Zambia 27910 T 2 2
17 Zambia 27911 C 2 2
18 Zambia 27912 T 2 2
19 Zambia 27913 T 2 2
20 Zambia 27914 A 2 2
21 Zambia 27915 G 2 2
22 Zambia 27916 G 2 2
23 Zambia 27917 A 2 2
24 Zambia 27918 A 2 2
25 Zambia 27919 T 2 2
26 Zambia 27920 C 2 2
27 Zambia 27921 A 2 2
28 Zambia 27922 T 2 2
29 Zambia 27923 C 2 2
30 Zambia 27924 A 2 2
31 Zambia 27925 C 2 2
32 Zambia 27926 A 2 2
33 Zambia 27927 A 2 2
34 Zambia 27928 C 2 2
35 Zambia 27929 T 2 2
36 Zambia 27930 G 2 2
37 Zambia 27931 T 2 2
38 Zambia 27932 A 2 2
39 Zambia 27933 G 2 2
40 Zambia 27934 C 2 2
41 Zambia 27935 T 2 2
42 Zambia 27936 G 2 2
43 Zambia 27937 C 2 2
44 Zambia 27938 A 2 2
45 Zambia 27939 T 2 2
46 Zambia 27940 T 2 2
47 Zambia 27941 T 2 2
48 Zambia 27942 C 2 2
49 Zambia 27943 A 2 2
50 Zambia 27944 C 2 2
51 Zambia 27945 C 2 2
52 Zambia 27946 A 2 2
53 Zambia 27947 A 2 2
54 Zambia 27948 G 2 2
55 Zambia 27949 A 2 2
56 Zambia 27950 A 2 2
57 Zambia 27951 T 2 2
58 Zambia 27952 G 2 2
59 Zambia 27953 T 2 2
60 Zambia 27954 A 2 2
61 Zambia 27955 G 2 2
62 Zambia 27956 T 2 2
63 Zambia 27957 T 2 2
64 Zambia 27958 T 2 2
65 Zambia 27959 A 2 2
66 Zambia 27960 C 2 2
67 Zambia 27961 A 2 2
68 Zambia 27962 G 2 2
69 Zambia 27963 T 2 2
70 Zambia 27964 C 2 2
71 Zambia 27965 A 2 2
72 Zambia 27966 T 2 2
73 Zambia 27967 G 2 2
74 Zambia 27968 T 2 2
75 Zambia 27969 A 2 2
76 Zambia 27970 C 2 2
77 Zambia 27971 T 2 2
78 Zambia 27972 C 2 2
79 Zambia 27973 A 2 2
80 Zambia 27974 A 2 2
81 Zambia 27975 C 2 2
82 Zambia 27976 A 2 2
83 Zambia 27977 T 2 2
84 Zambia 27978 C 2 2
85 Zambia 27979 A 2 2
86 Zambia 27980 A 2 2
87 Zambia 27981 C 2 2
88 Zambia 27982 C 2 2
89 Zambia 27983 A 2 2
90 Zambia 27984 T 2 2
91 Zambia 27985 A 2 2
92 Zambia 27986 T 2 2
93 Zambia 27987 G 2 2
94 Zambia 27988 T 2 2
95 Zambia 27989 A 2 2
96 Zambia 27990 G 2 2
97 Zambia 27991 T 2 2
98 Zambia 27992 T 2 2
99 Zambia 27993 G 2 2
100 Zambia 27994 A 2 2
101 Zambia 27995 T 2 2
102 Zambia 27996 G 2 2
103 Zambia 27997 A 2 2
104 Zambia 27998 C 2 2
105 Zambia 27999 C 2 2
106 Zambia 28000 C 2 2
107 Zambia 28001 G 2 2
108 Zambia 28002 T 2 2
109 Zambia 28003 G 2 2
110 Zambia 28004 T 2 2
111 Zambia 28005 C 2 2
112 Zambia 28006 C 2 2
113 Zambia 28007 T 2 2
114 Zambia 28008 A 2 2
115 Zambia 28009 T 2 2
116 Zambia 28010 T 2 2
117 Zambia 28011 C 2 2
118 Zambia 28012 A 2 2
119 Zambia 28013 C 2 2
120 Zambia 28014 T 2 2
121 Zambia 28015 T 2 2
122 Zambia 28016 C 2 2
123 Zambia 28017 T 2 2
124 Zambia 28018 A 2 2
125 Zambia 28019 T 2 2
126 Zambia 28020 T 2 2
127 Zambia 28021 C 2 2
128 Zambia 28022 T 2 2
129 Zambia 28023 A 2 2
130 Zambia 28024 A 2 2
131 Zambia 28025 A 2 2
132 Zambia 28026 T 2 2
133 Zambia 28027 G 2 2
134 Zambia 28028 G 2 2
135 Zambia 28029 T 2 2
136 Zambia 28030 A 2 2
137 Zambia 28031 T 2 2
138 Zambia 28032 A 2 2
139 Zambia 28033 T 2 2
140 Zambia 28034 T 2 2
141 Zambia 28035 A 2 2
142 Zambia 28036 G 2 2
143 Zambia 28037 A 2 2
144 Zambia 28038 G 2 2
145 Zambia 28039 T 2 2
146 Zambia 28040 A 2 2
147 Zambia 28041 G 2 2
148 Zambia 28042 G 2 2
149 Zambia 28043 A 2 2
150 Zambia 28044 G 2 2
151 Zambia 28045 C 2 2
152 Zambia 28046 T 2 2
153 Zambia 28047 A 2 2
154 Zambia 28048 G 2 2
155 Zambia 28049 A 2 2
156 Zambia 28050 A 2 2
157 Zambia 28051 A 2 2
158 Zambia 28052 A 2 2
159 Zambia 28053 T 2 2
160 Zambia 28054 C 2 2
161 Zambia 28055 A 2 2
162 Zambia 28056 G 2 2
163 Zambia 28057 C 2 2
164 Zambia 28058 A 2 2
165 Zambia 28059 C 2 2
166 Zambia 28060 C 2 2
167 Zambia 28061 T 2 2
168 Zambia 28062 T 2 2
169 Zambia 28063 T 2 2
170 Zambia 28064 A 2 2
171 Zambia 28065 A 2 2
172 Zambia 28066 T 2 2
173 Zambia 28067 T 2 2
174 Zambia 28068 G 2 2
175 Zambia 28069 A 2 2
176 Zambia 28070 A 2 2
177 Zambia 28071 T 2 2
178 Zambia 28072 T 2 2
179 Zambia 28073 G 2 2
180 Zambia 28074 T 2 2
181 Zambia 28075 G 2 2
182 Zambia 28076 C 2 2
183 Zambia 28077 G 2 2
184 Zambia 28078 T 2 2
185 Zambia 28079 G 2 2
186 Zambia 28080 G 2 2
187 Zambia 28081 A 2 2
188 Zambia 28082 T 2 2
189 Zambia 28083 G 2 2
190 Zambia 28084 A 2 2
191 Zambia 28085 G 2 2
192 Zambia 28086 G 2 2
193 Zambia 28087 C 2 2
194 Zambia 28088 T 2 2
195 Zambia 28089 G 2 2
196 Zambia 28090 G 2 2
197 Zambia 28091 T 2 2
198 Zambia 28092 T 2 2
199 Zambia 28093 C 2 2
200 Zambia 28094 T 2 2
201 Zambia 28095 A 2 2
202 Zambia 28096 A 2 2
203 Zambia 28097 A 2 2
204 Zambia 28098 T 2 2
205 Zambia 28099 C 2 2
206 Zambia 28100 A 2 2
207 Zambia 28101 C 2 2
208 Zambia 28102 C 2 2
209 Zambia 28103 C 2 2
210 Zambia 28104 A 2 2
211 Zambia 28105 T 2 2
212 Zambia 28106 T 2 2
213 Zambia 28107 C 2 2
214 Zambia 28108 A 2 2
215 Zambia 28109 G 2 2
216 Zambia 28110 T 2 2
217 Zambia 28111 A 2 2
218 Zambia 28112 C 2 2
219 Zambia 28113 A 2 2
220 Zambia 28114 T 2 2
221 Zambia 28115 C 2 2
222 Zambia 28116 G 2 2
223 Zambia 28117 A 2 2
224 Zambia 28118 T 2 2
225 Zambia 28119 A 2 2
226 Zambia 28120 T 2 2
227 Zambia 28121 C 2 2
228 Zambia 28122 G 2 2
229 Zambia 28123 G 2 2
230 Zambia 28124 T 2 2
231 Zambia 28125 A 2 2
232 Zambia 28126 A 2 2
233 Zambia 28127 T 2 2
234 Zambia 28128 T 2 2
235 Zambia 28129 A 2 2
236 Zambia 28130 T 2 2
237 Zambia 28131 A 2 2
238 Zambia 28132 C 2 2
239 Zambia 28133 A 2 2
240 Zambia 28134 G 2 2
241 Zambia 28135 T 2 2
242 Zambia 28136 T 2 2
243 Zambia 28137 T 2 2
244 Zambia 28138 C 2 2
245 Zambia 28139 C 2 2
246 Zambia 28140 T 2 2
247 Zambia 28141 G 2 2
248 Zambia 28142 T 2 2
249 Zambia 28143 T 2 2
250 Zambia 28144 T 2 2
251 Zambia 28145 A 2 2
252 Zambia 28146 C 2 2
253 Zambia 28147 C 2 2
254 Zambia 28148 T 2 2
255 Zambia 28149 T 2 2
256 Zambia 28150 T 2 2
257 Zambia 28151 T 2 2
258 Zambia 28152 A 2 2
259 Zambia 28153 C 2 2
260 Zambia 28154 A 2 2
261 Zambia 28155 A 2 2
262 Zambia 28156 T 2 2
263 Zambia 28157 T 2 2
264 Zambia 28158 A 2 2
265 Zambia 28159 A 2 2
266 Zambia 28160 T 2 2
267 Zambia 28161 T 2 2
268 Zambia 28162 G 2 2
269 Zambia 28163 C 2 2
270 Zambia 28164 C 2 2
271 Zambia 28165 A 2 2
272 Zambia 28166 G 2 2
273 Zambia 28167 G 2 2
274 Zambia 28168 A 2 2
275 Zambia 28169 A 2 2
276 Zambia 28170 C 2 2
277 Zambia 28171 C 2 2
278 Zambia 28172 T 2 2
279 Zambia 28173 A 2 2
280 Zambia 28174 A 2 2
281 Zambia 28175 A 2 2
282 Zambia 28176 T 2 2
283 Zambia 28177 T 2 2
284 Zambia 28178 G 2 2
285 Zambia 28179 G 2 2
286 Zambia 28180 G 2 2
287 Zambia 28181 T 2 2
288 Zambia 28182 A 2 2
289 Zambia 28183 G 2 2
290 Zambia 28184 T 2 2
291 Zambia 28185 C 2 2
292 Zambia 28186 T 2 2
293 Zambia 28187 T 2 2
294 Zambia 28188 G 2 2
295 Zambia 28189 T 2 2
296 Zambia 28190 A 2 2
297 Zambia 28191 G 2 2
298 Zambia 28192 T 2 2
299 Zambia 28193 G 2 2
300 Zambia 28194 C 2 2
301 Zambia 28195 G 2 2
302 Zambia 28196 T 2 2
303 Zambia 28197 T 2 2
304 Zambia 28198 G 2 2
305 Zambia 28199 T 2 2
306 Zambia 28200 T 2 2
307 Zambia 28201 C 2 2
308 Zambia 28202 G 2 2
309 Zambia 28203 T 2 2
310 Zambia 28204 T 2 2
311 Zambia 28205 C 2 2
312 Zambia 28206 T 2 2
313 Zambia 28207 A 2 2
314 Zambia 28208 T 2 2
315 Zambia 28209 G 2 2
316 Zambia 28210 A 2 2
317 Zambia 28211 A 2 2
318 Zambia 28212 G 2 2
319 Zambia 28213 A 2 2
320 Zambia 28214 C 2 2
321 Zambia 28215 T 2 2
322 Zambia 28216 T 2 2
323 Zambia 28217 T 2 2
324 Zambia 28218 T 2 2
325 Zambia 28219 T 2 2
326 Zambia 28220 A 2 2
327 Zambia 28221 G 2 2
328 Zambia 28222 A 2 2
329 Zambia 28223 G 2 2
330 Zambia 28224 T 2 2
331 Zambia 28225 A 2 2
332 Zambia 28226 T 2 2
333 Zambia 28227 C 2 2
334 Zambia 28228 A 2 2
335 Zambia 28229 T 2 2
336 Zambia 28230 G 2 2
337 Zambia 28231 A 2 2
338 Zambia 28232 C 2 2
339 Zambia 28233 G 2 2
340 Zambia 28234 T 2 2
341 Zambia 28235 T 2 2
342 Zambia 28236 C 2 2
343 Zambia 28237 G 2 2
344 Zambia 28238 T 2 2
345 Zambia 28239 G 2 2
346 Zambia 28240 T 2 2
347 Zambia 28241 T 2 2
348 Zambia 28242 G 2 2
349 Zambia 28243 T 2 2
350 Zambia 28244 T 2 2
351 Zambia 28245 T 2 2
352 Zambia 28246 T 2 2
353 Zambia 28247 A 2 2
354 Zambia 28248 G 2 2
355 Zambia 28249 A 2 2
356 Zambia 28250 T 2 2
357 Zambia 28251 T 2 2
358 Zambia 28252 T 2 2
359 Zambia 28253 C 2 2
360 Zambia 28254 A 2 2
361 Zambia 28255 T 2 2
362 Zambia 28256 C 2 2
363 Zambia 28257 T 2 2
364 Zambia 28258 A 2 2
365 Zambia 28259 A 2 2