National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E 1   18                                        
F     24         1         1           1        
G     15                                        
H     12             1             1           1
I     30               1                 2      
K 1   15                                        
L     30         1                     2        
M     3                                        
N     6                                        
P     21                         1     2        
Q 2   18             1             1 1          
R     12               1                        
S     27         1         1                    
T     15                                        
V     36 1       1         2               1    
W     3                                        
Y     21   1                                   1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 27894 A 487 487
1 Turkey 27895 T 487 487
2 Turkey 27896 G 487 487
3 Turkey 27897 A 487 487
4 Turkey 27898 A 487 487
5 Turkey 27899 A 487 487
6 Turkey 27900 T 487 487
7 Turkey 27901 T 487 487
8 Turkey 27902 T 487 487
9 Turkey 27903 C 487 487
10 Turkey 27904 T 487 487
11 Turkey 27905 T 487 487
12 Turkey 27906 G 487 487
13 Turkey 27907 T 487 487
14 Turkey 27908 T 487 487
15 Turkey 27909 T 487 487
16 Turkey 27910 T C 487 486 Phe6Ser
17 Turkey 27911 C 487 487
18 Turkey 27912 T 487 487
19 Turkey 27913 T 487 487
20 Turkey 27914 A 487 487
21 Turkey 27915 G 487 487
22 Turkey 27916 G 487 487
23 Turkey 27917 A 487 487
24 Turkey 27918 A 487 487
25 Turkey 27919 T C 487 486 Ile9Thr
26 Turkey 27920 C T 487 486 Ile9Ile
27 Turkey 27921 A 487 487
28 Turkey 27922 T 487 487
29 Turkey 27923 C 487 487
30 Turkey 27924 A 487 487
31 Turkey 27925 C 487 487
32 Turkey 27926 A 487 487
33 Turkey 27927 A 487 487
34 Turkey 27928 C 487 487
35 Turkey 27929 T 487 487
36 Turkey 27930 G 487 487
37 Turkey 27931 T 487 487
38 Turkey 27932 A 487 487
39 Turkey 27933 G 487 487
40 Turkey 27934 C 487 487
41 Turkey 27935 T 487 487
42 Turkey 27936 G 487 487
43 Turkey 27937 C 487 487
44 Turkey 27938 A 487 487
45 Turkey 27939 T 487 487
46 Turkey 27940 T 487 487
47 Turkey 27941 T 487 487
48 Turkey 27942 C 487 487
49 Turkey 27943 A 487 487
50 Turkey 27944 C T 487 484 His17His
51 Turkey 27945 C T 487 486 Gln18*
52 Turkey 27946 A 487 487
53 Turkey 27947 A 487 487
54 Turkey 27948 G 487 487
55 Turkey 27949 A 487 487
56 Turkey 27950 A 487 487
57 Turkey 27951 T 487 487
58 Turkey 27952 G 487 487
59 Turkey 27953 T 487 487
60 Turkey 27954 A 487 487
61 Turkey 27955 G 487 487
62 Turkey 27956 T 487 487
63 Turkey 27957 T 487 487
64 Turkey 27958 T 487 487
65 Turkey 27959 A 487 487
66 Turkey 27960 C 487 487
67 Turkey 27961 A 487 487
68 Turkey 27962 G 487 487
69 Turkey 27963 T 487 487
70 Turkey 27964 C 487 487
71 Turkey 27965 A 487 487
72 Turkey 27966 T 487 487
73 Turkey 27967 G 487 487
74 Turkey 27968 T 487 487
75 Turkey 27969 A 487 487
76 Turkey 27970 C 487 487
77 Turkey 27971 T 487 487
78 Turkey 27972 C T 487 437 Gln27*
79 Turkey 27973 A 487 487
80 Turkey 27974 A 487 487
81 Turkey 27975 C 487 487
82 Turkey 27976 A 487 487
83 Turkey 27977 T 487 487
84 Turkey 27978 C 487 487
85 Turkey 27979 A 487 487
86 Turkey 27980 A 487 487
87 Turkey 27981 C 487 487
88 Turkey 27982 C 487 487
89 Turkey 27983 A 487 487
90 Turkey 27984 T 487 487
91 Turkey 27985 A 487 487
92 Turkey 27986 T 487 487
93 Turkey 27987 G T 487 486 Val32Leu
94 Turkey 27988 T 487 487
95 Turkey 27989 A 487 487
96 Turkey 27990 G 487 487
97 Turkey 27991 T 487 487
98 Turkey 27992 T 487 483
99 Turkey 27993 G 487 483
100 Turkey 27994 A 487 483
101 Turkey 27995 T 487 483
102 Turkey 27996 G 487 483
103 Turkey 27997 A 487 483
104 Turkey 27998 C 487 483
105 Turkey 27999 C T 487 482 Pro36Ser
106 Turkey 28000 C 487 483
107 Turkey 28001 G T 487 482 Pro36Pro
108 Turkey 28002 T 487 483
109 Turkey 28003 G 487 483
110 Turkey 28004 T 487 483
111 Turkey 28005 C 487 483
112 Turkey 28006 C 487 483
113 Turkey 28007 T 487 483
114 Turkey 28008 A 487 483
115 Turkey 28009 T C 487 482 Ile39Thr
116 Turkey 28010 T 487 483
117 Turkey 28011 C T 487 482 His40Tyr
118 Turkey 28012 A 487 483
119 Turkey 28013 C 487 483
120 Turkey 28014 T 487 482
121 Turkey 28015 T 487 482
122 Turkey 28016 C 487 482
123 Turkey 28017 T 487 482
124 Turkey 28018 A 487 483
125 Turkey 28019 T 487 483
126 Turkey 28020 T 487 483
127 Turkey 28021 C 487 483
128 Turkey 28022 T 487 483
129 Turkey 28023 A 487 483
130 Turkey 28024 A 487 483
131 Turkey 28025 A 487 483
132 Turkey 28026 T 487 483
133 Turkey 28027 G 487 483
134 Turkey 28028 G 487 483
135 Turkey 28029 T 487 483
136 Turkey 28030 A 487 483
137 Turkey 28031 T 487 483
138 Turkey 28032 A 487 485
139 Turkey 28033 T 487 485
140 Turkey 28034 T 487 486
141 Turkey 28035 A 487 486
142 Turkey 28036 G 487 486
143 Turkey 28037 A 487 486
144 Turkey 28038 G 487 486
145 Turkey 28039 T C 487 486 Val49Ala
146 Turkey 28040 A 487 487
147 Turkey 28041 G 487 487
148 Turkey 28042 G 487 487
149 Turkey 28043 A 487 487
150 Turkey 28044 G 487 487
151 Turkey 28045 C 487 487
152 Turkey 28046 T 487 487
153 Turkey 28047 A 487 487
154 Turkey 28048 G T 487 471 Arg52Ile
155 Turkey 28049 A 487 487
156 Turkey 28050 A 487 487
157 Turkey 28051 A 487 487
158 Turkey 28052 A 487 487
159 Turkey 28053 T 487 487
160 Turkey 28054 C T 487 486 Ser54Leu
161 Turkey 28055 A 487 487
162 Turkey 28056 G 487 487
163 Turkey 28057 C 487 487
164 Turkey 28058 A 487 487
165 Turkey 28059 C T 487 486 Pro56Ser
166 Turkey 28060 C 487 487
167 Turkey 28061 T 487 487
168 Turkey 28062 T 487 487
169 Turkey 28063 T 487 487
170 Turkey 28064 A 487 487
171 Turkey 28065 A 487 487
172 Turkey 28066 T 487 487
173 Turkey 28067 T 487 487
174 Turkey 28068 G T 487 486 Glu59*
175 Turkey 28069 A 487 487
176 Turkey 28070 A 487 487
177 Turkey 28071 T 487 487
178 Turkey 28072 T 487 487
179 Turkey 28073 G T 487 486 Leu60Phe
180 Turkey 28074 T 489 489
181 Turkey 28075 G 489 489
182 Turkey 28076 C 489 489
183 Turkey 28077 G T 489 488 Val62Leu
184 Turkey 28078 T 489 489
185 Turkey 28079 G 489 488
186 Turkey 28080 G 489 488
187 Turkey 28081 A 489 488
188 Turkey 28082 T 489 488
189 Turkey 28083 G 489 488
190 Turkey 28084 A 489 488
191 Turkey 28085 G 489 488
192 Turkey 28086 G 489 488
193 Turkey 28087 C 489 488
194 Turkey 28088 T 489 488
195 Turkey 28089 G 489 488
196 Turkey 28090 G 489 488
197 Turkey 28091 T 489 488
198 Turkey 28092 T 489 488
199 Turkey 28093 C T 489 478 Ser67Phe
200 Turkey 28094 T 489 488
201 Turkey 28095 A T 489 469 Lys68*
202 Turkey 28096 A 489 488
203 Turkey 28097 A 489 488
204 Turkey 28098 T 489 488
205 Turkey 28099 C 489 488
206 Turkey 28100 A 489 488
207 Turkey 28101 C 489 488
208 Turkey 28102 C 489 488
209 Turkey 28103 C 489 488
210 Turkey 28104 A 489 488
211 Turkey 28105 T 489 488
212 Turkey 28106 T 489 488
213 Turkey 28107 C 489 488
214 Turkey 28108 A 489 488
215 Turkey 28109 G T 489 486 Gln72His
216 Turkey 28110 T 489 488
217 Turkey 28111 A G 489 436 Tyr73Cys
218 Turkey 28112 C 489 488
219 Turkey 28113 A 489 488
220 Turkey 28114 T 489 488
221 Turkey 28115 C 489 488
222 Turkey 28116 G 489 488
223 Turkey 28117 A 489 488
224 Turkey 28118 T 489 488
225 Turkey 28119 A 489 488
226 Turkey 28120 T 489 488
227 Turkey 28121 C 489 488
228 Turkey 28122 G 489 488
229 Turkey 28123 G 489 488
230 Turkey 28124 T 489 488
231 Turkey 28125 A 489 488
232 Turkey 28126 A 489 488
233 Turkey 28127 T 489 488
234 Turkey 28128 T 489 488
235 Turkey 28129 A 489 488
236 Turkey 28130 T C 489 487 Tyr79Tyr
237 Turkey 28131 A 489 488
238 Turkey 28132 C 489 488
239 Turkey 28133 A 489 488
240 Turkey 28134 G 490 490
241 Turkey 28135 T 490 490
242 Turkey 28136 T 490 490
243 Turkey 28137 T 490 490
244 Turkey 28138 C 490 490
245 Turkey 28139 C 490 490
246 Turkey 28140 T 490 490
247 Turkey 28141 G 490 490
248 Turkey 28142 T 490 490
249 Turkey 28143 T 490 490
250 Turkey 28144 T C 490 485 Leu84Ser
251 Turkey 28145 A 490 490
252 Turkey 28146 C 490 490
253 Turkey 28147 C 490 490
254 Turkey 28148 T 490 488
255 Turkey 28149 T 490 490
256 Turkey 28150 T 490 490
257 Turkey 28151 T 490 490
258 Turkey 28152 A 490 490
259 Turkey 28153 C 490 490
260 Turkey 28154 A 490 490
261 Turkey 28155 A 490 490
262 Turkey 28156 T 490 490
263 Turkey 28157 T 490 490
264 Turkey 28158 A 490 490
265 Turkey 28159 A 490 490
266 Turkey 28160 T 490 490
267 Turkey 28161 T 490 490
268 Turkey 28162 G 490 489
269 Turkey 28163 C 490 489
270 Turkey 28164 C 490 489
271 Turkey 28165 A G 490 488 Gln91Arg
272 Turkey 28166 G A 490 488 Gln91Gln
273 Turkey 28167 G 490 490
274 Turkey 28168 A 490 490
275 Turkey 28169 A 490 490
276 Turkey 28170 C 490 490
277 Turkey 28171 C 488 488
278 Turkey 28172 T 488 488
279 Turkey 28173 A 488 488
280 Turkey 28174 A 488 488
281 Turkey 28175 A 488 488
282 Turkey 28176 T 488 488
283 Turkey 28177 T C 488 487 Leu95Ser
284 Turkey 28178 G 488 488
285 Turkey 28179 G 488 488
286 Turkey 28180 G 488 488
287 Turkey 28181 T 488 488
288 Turkey 28182 A 488 488
289 Turkey 28183 G 488 488
290 Turkey 28184 T 488 488
291 Turkey 28185 C 488 488
292 Turkey 28186 T 488 488
293 Turkey 28187 T 488 488
294 Turkey 28188 G 488 488
295 Turkey 28189 T 488 488
296 Turkey 28190 A 488 488
297 Turkey 28191 G 488 488
298 Turkey 28192 T 488 488
299 Turkey 28193 G A 488 487 Val100Val
300 Turkey 28194 C 488 488
301 Turkey 28195 G 488 488
302 Turkey 28196 T 488 488
303 Turkey 28197 T 488 488
304 Turkey 28198 G 488 488
305 Turkey 28199 T 488 488
306 Turkey 28200 T 488 488
307 Turkey 28201 C 488 488
308 Turkey 28202 G 488 488
309 Turkey 28203 T C 488 487 Phe104Leu
310 Turkey 28204 T 488 488
311 Turkey 28205 C 488 488
312 Turkey 28206 T 488 488
313 Turkey 28207 A 488 488
314 Turkey 28208 T 488 488
315 Turkey 28209 G 488 488
316 Turkey 28210 A 488 488
317 Turkey 28211 A 488 488
318 Turkey 28212 G 488 488
319 Turkey 28213 A 488 488
320 Turkey 28214 C 488 488
321 Turkey 28215 T 488 488
322 Turkey 28216 T 488 488
323 Turkey 28217 T 488 488
324 Turkey 28218 T 488 488
325 Turkey 28219 T 488 488
326 Turkey 28220 A 488 488
327 Turkey 28221 G 488 488
328 Turkey 28222 A 488 488
329 Turkey 28223 G 488 488
330 Turkey 28224 T 488 488
331 Turkey 28225 A 488 488
332 Turkey 28226 T 488 488
333 Turkey 28227 C 488 488
334 Turkey 28228 A 488 488
335 Turkey 28229 T G 488 487 His112Gln
336 Turkey 28230 G 488 488
337 Turkey 28231 A 488 488
338 Turkey 28232 C 488 488
339 Turkey 28233 G 488 488
340 Turkey 28234 T 488 488
341 Turkey 28235 T 488 488
342 Turkey 28236 C 488 488
343 Turkey 28237 G 488 488
344 Turkey 28238 T 488 488
345 Turkey 28239 G T 488 487 Val116Phe
346 Turkey 28240 T 488 488
347 Turkey 28241 T 488 488
348 Turkey 28242 G 488 488
349 Turkey 28243 T 488 488
350 Turkey 28244 T 488 488
351 Turkey 28245 T 488 488
352 Turkey 28246 T 488 488
353 Turkey 28247 A 488 488
354 Turkey 28248 G 488 488
355 Turkey 28249 A 488 488
356 Turkey 28250 T 488 488
357 Turkey 28251 T 488 488
358 Turkey 28252 T 488 488
359 Turkey 28253 C T 488 483 Phe120Phe
360 Turkey 28254 A 488 488
361 Turkey 28255 T 488 488
362 Turkey 28256 C 488 488
363 Turkey 28257 T 488 488
364 Turkey 28258 A 488 488
365 Turkey 28259 A 488 488