National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1 1 2    
C     21         2                             1
D     22     1 1               1               1
E 2   18                 1         1            
F     24         2         1                    
G     15       1                     2          
H     12             1     1   1               1
I     30               2   1             1 1    
K 1   15                                        
L     30         2                   1 1   1    
M     3                                        
N     6                                        
P     21                   2     1     1 1      
Q 1   18                                        
R     12               1   1                    
S     27                   1   1                
T     15                       1         1      
V     36         1     1   1 1                  
W     3   1               1           1        
Y 1   21   1         2                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 27894 A 1388 1388
1 Sweden 27895 T 1388 1388
2 Sweden 27896 G 1388 1388
3 Sweden 27897 A 1388 1388
4 Sweden 27898 A 1388 1388
5 Sweden 27899 A 1388 1388
6 Sweden 27900 T 1388 1388
7 Sweden 27901 T 1388 1388
8 Sweden 27902 T 1388 1388
9 Sweden 27903 C 1388 1388
10 Sweden 27904 T G 1388 1387 Leu4Arg
11 Sweden 27905 T 1388 1388
12 Sweden 27906 G 1388 1388
13 Sweden 27907 T 1388 1388
14 Sweden 27908 T 1388 1388
15 Sweden 27909 T 1388 1388
16 Sweden 27910 T 1388 1388
17 Sweden 27911 C A 1388 1387 Phe6Leu
18 Sweden 27912 T 1388 1388
19 Sweden 27913 T 1388 1388
20 Sweden 27914 A 1388 1388
21 Sweden 27915 G C,A 1388 1385 Gly8Arg-p.Gly8Arg
22 Sweden 27916 G A 1388 1386 Gly8Glu
23 Sweden 27917 A 1388 1388
24 Sweden 27918 A 1388 1388
25 Sweden 27919 T 1388 1388
26 Sweden 27920 C T 1388 1384 Ile9Ile
27 Sweden 27921 A 1388 1388
28 Sweden 27922 T 1388 1388
29 Sweden 27923 C T 1388 1386 Ile10Ile
30 Sweden 27924 A 1388 1388
31 Sweden 27925 C 1388 1388
32 Sweden 27926 A 1388 1388
33 Sweden 27927 A 1388 1388
34 Sweden 27928 C 1388 1388
35 Sweden 27929 T 1388 1388
36 Sweden 27930 G 1388 1388
37 Sweden 27931 T 1388 1388
38 Sweden 27932 A 1388 1388
39 Sweden 27933 G 1388 1388
40 Sweden 27934 C 1388 1388
41 Sweden 27935 T 1388 1388
42 Sweden 27936 G 1388 1388
43 Sweden 27937 C 1388 1388
44 Sweden 27938 A 1388 1388
45 Sweden 27939 T 1388 1388
46 Sweden 27940 T 1388 1388
47 Sweden 27941 T 1388 1388
48 Sweden 27942 C T 1388 1383 His17Tyr
49 Sweden 27943 A 1388 1388
50 Sweden 27944 C T 1388 1357 His17His
51 Sweden 27945 C 1388 1388
52 Sweden 27946 A 1388 1388
53 Sweden 27947 A 1388 1388
54 Sweden 27948 G T 1388 1387 Glu19*
55 Sweden 27949 A 1388 1388
56 Sweden 27950 A 1388 1388
57 Sweden 27951 T 1388 1388
58 Sweden 27952 G A 1388 1387 Cys20Tyr
59 Sweden 27953 T 1388 1388
60 Sweden 27954 A 1388 1388
61 Sweden 27955 G A 1388 1386 Ser21Asn
62 Sweden 27956 T 1388 1388
63 Sweden 27957 T 1388 1388
64 Sweden 27958 T 1388 1388
65 Sweden 27959 A 1388 1388
66 Sweden 27960 C 1388 1388
67 Sweden 27961 A 1388 1388
68 Sweden 27962 G 1388 1388
69 Sweden 27963 T 1388 1388
70 Sweden 27964 C 1388 1388
71 Sweden 27965 A 1388 1388
72 Sweden 27966 T 1388 1388
73 Sweden 27967 G 1388 1388
74 Sweden 27968 T 1388 1388
75 Sweden 27969 A 1388 1388
76 Sweden 27970 C A 1388 1385 Thr26Asn
77 Sweden 27971 T 1388 1388
78 Sweden 27972 C T 1388 1371 Gln27*
79 Sweden 27973 A 1388 1388
80 Sweden 27974 A 1388 1388
81 Sweden 27975 C A 1388 1387 His28Asn
82 Sweden 27976 A T 1388 1386 His28Leu
83 Sweden 27977 T 1388 1388
84 Sweden 27978 C 1388 1388
85 Sweden 27979 A 1388 1388
86 Sweden 27980 A 1388 1388
87 Sweden 27981 C A 1388 1386 Pro30Thr
88 Sweden 27982 C 1388 1388
89 Sweden 27983 A 1388 1388
90 Sweden 27984 T 1388 1388
91 Sweden 27985 A 1388 1388
92 Sweden 27986 T A 1388 1385 Tyr31*
93 Sweden 27987 G A 1388 1387 Val32Ile
94 Sweden 27988 T 1388 1388
95 Sweden 27989 A 1388 1388
96 Sweden 27990 G 1388 1388
97 Sweden 27991 T 1388 1388
98 Sweden 27992 T 1388 1388
99 Sweden 27993 G T 1388 1387 Asp34Tyr
100 Sweden 27994 A 1388 1388
101 Sweden 27995 T 1388 1388
102 Sweden 27996 G 1388 1388
103 Sweden 27997 A 1388 1388
104 Sweden 27998 C 1388 1388
105 Sweden 27999 C 1388 1388
106 Sweden 28000 C T 1388 1387 Pro36Leu
107 Sweden 28001 G T 1388 1387 Pro36Pro
108 Sweden 28002 T 1388 1388
109 Sweden 28003 G T 1388 1387 Cys37Phe
110 Sweden 28004 T 1388 1388
111 Sweden 28005 C 1388 1388
112 Sweden 28006 C 1388 1388
113 Sweden 28007 T 1388 1388
114 Sweden 28008 A 1388 1388
115 Sweden 28009 T 1388 1388
116 Sweden 28010 T 1388 1388
117 Sweden 28011 C 1388 1388
118 Sweden 28012 A 1388 1388
119 Sweden 28013 C 1388 1388
120 Sweden 28014 T 1388 1388
121 Sweden 28015 T 1388 1388
122 Sweden 28016 C T 1388 1387 Phe41Phe
123 Sweden 28017 T 1388 1388
124 Sweden 28018 A 1388 1388
125 Sweden 28019 T 1388 1388
126 Sweden 28020 T 1388 1388
127 Sweden 28021 C 1388 1388
128 Sweden 28022 T 1388 1388
129 Sweden 28023 A 1388 1388
130 Sweden 28024 A 1388 1388
131 Sweden 28025 A 1388 1388
132 Sweden 28026 T 1388 1388
133 Sweden 28027 G C,T 1388 1385 Trp45Ser-p.Trp45Leu
134 Sweden 28028 G T 1388 1387 Trp45Cys
135 Sweden 28029 T 1388 1388
136 Sweden 28030 A 1388 1388
137 Sweden 28031 T C 1388 1384 Tyr46Tyr
138 Sweden 28032 A 1388 1388
139 Sweden 28033 T 1388 1388
140 Sweden 28034 T 1388 1388
141 Sweden 28035 A 1388 1388
142 Sweden 28036 G 1388 1388
143 Sweden 28037 A 1388 1388
144 Sweden 28038 G 1388 1388
145 Sweden 28039 T 1388 1388
146 Sweden 28040 A 1388 1388
147 Sweden 28041 G 1388 1388
148 Sweden 28042 G 1388 1388
149 Sweden 28043 A 1388 1388
150 Sweden 28044 G 1388 1388
151 Sweden 28045 C 1388 1388
152 Sweden 28046 T 1388 1388
153 Sweden 28047 A 1388 1388
154 Sweden 28048 G T 1388 1372 Arg52Ile
155 Sweden 28049 A 1388 1388
156 Sweden 28050 A 1388 1388
157 Sweden 28051 A 1388 1388
158 Sweden 28052 A 1388 1388
159 Sweden 28053 T 1388 1388
160 Sweden 28054 C T 1388 1387 Ser54Leu
161 Sweden 28055 A 1388 1388
162 Sweden 28056 G A 1388 1386 Ala55Thr
163 Sweden 28057 C T 1388 1387 Ala55Val
164 Sweden 28058 A 1388 1388
165 Sweden 28059 C 1388 1388
166 Sweden 28060 C 1388 1388
167 Sweden 28061 T 1388 1388
168 Sweden 28062 T 1388 1388
169 Sweden 28063 T 1388 1388
170 Sweden 28064 A 1388 1388
171 Sweden 28065 A G 1388 1387 Ile58Val
172 Sweden 28066 T 1388 1388
173 Sweden 28067 T 1388 1388
174 Sweden 28068 G 1388 1388
175 Sweden 28069 A 1388 1388
176 Sweden 28070 A 1388 1388
177 Sweden 28071 T 1388 1388
178 Sweden 28072 T 1388 1388
179 Sweden 28073 G 1388 1388
180 Sweden 28074 T 1388 1388
181 Sweden 28075 G 1388 1388
182 Sweden 28076 C 1388 1388
183 Sweden 28077 G T,A 1388 1384 Val62Leu-p.Val62Met
184 Sweden 28078 T 1388 1388
185 Sweden 28079 G 1388 1388
186 Sweden 28080 G A 1388 1387 Asp63Asn
187 Sweden 28081 A 1388 1388
188 Sweden 28082 T C 1388 1383 Asp63Asp
189 Sweden 28083 G 1388 1388
190 Sweden 28084 A 1388 1388
191 Sweden 28085 G 1388 1388
192 Sweden 28086 G T 1388 1380 Ala65Ser
193 Sweden 28087 C T 1388 1385 Ala65Val
194 Sweden 28088 T 1388 1388
195 Sweden 28089 G 1388 1388
196 Sweden 28090 G 1388 1388
197 Sweden 28091 T 1388 1388
198 Sweden 28092 T 1388 1388
199 Sweden 28093 C 1388 1388
200 Sweden 28094 T 1388 1388
201 Sweden 28095 A T 1388 1384 Lys68*
202 Sweden 28096 A 1388 1388
203 Sweden 28097 A 1388 1388
204 Sweden 28098 T 1388 1388
205 Sweden 28099 C 1388 1388
206 Sweden 28100 A 1388 1388
207 Sweden 28101 C 1388 1388
208 Sweden 28102 C 1388 1388
209 Sweden 28103 C 1388 1388
210 Sweden 28104 A 1388 1388
211 Sweden 28105 T 1388 1388
212 Sweden 28106 T 1388 1388
213 Sweden 28107 C 1388 1388
214 Sweden 28108 A 1388 1388
215 Sweden 28109 G 1388 1388
216 Sweden 28110 T C 1388 1387 Tyr73His
217 Sweden 28111 A G 1388 1373 Tyr73Cys
218 Sweden 28112 C 1388 1388
219 Sweden 28113 A 1388 1388
220 Sweden 28114 T C 1388 1387 Ile74Thr
221 Sweden 28115 C 1388 1388
222 Sweden 28116 G 1388 1388
223 Sweden 28117 A 1388 1388
224 Sweden 28118 T 1388 1388
225 Sweden 28119 A 1388 1388
226 Sweden 28120 T 1388 1388
227 Sweden 28121 C 1388 1388
228 Sweden 28122 G 1388 1388
229 Sweden 28123 G 1388 1388
230 Sweden 28124 T 1388 1388
231 Sweden 28125 A 1388 1388
232 Sweden 28126 A 1388 1388
233 Sweden 28127 T 1388 1388
234 Sweden 28128 T C 1388 1387 Tyr79His
235 Sweden 28129 A 1388 1388
236 Sweden 28130 T 1388 1388
237 Sweden 28131 A 1388 1388
238 Sweden 28132 C 1388 1388
239 Sweden 28133 A T 1388 1376 Thr80Thr
240 Sweden 28134 G 1388 1388
241 Sweden 28135 T 1388 1388
242 Sweden 28136 T 1388 1388
243 Sweden 28137 T 1388 1388
244 Sweden 28138 C 1388 1388
245 Sweden 28139 C 1388 1388
246 Sweden 28140 T 1388 1388
247 Sweden 28141 G T 1388 1386 Cys83Phe
248 Sweden 28142 T 1388 1388
249 Sweden 28143 T 1388 1388
250 Sweden 28144 T C 1388 1384 Leu84Ser
251 Sweden 28145 A 1388 1388
252 Sweden 28146 C T 1388 1387 Pro85Ser
253 Sweden 28147 C 1388 1388
254 Sweden 28148 T 1388 1388
255 Sweden 28149 T 1388 1388
256 Sweden 28150 T 1388 1388
257 Sweden 28151 T 1388 1388
258 Sweden 28152 A 1388 1388
259 Sweden 28153 C 1388 1388
260 Sweden 28154 A 1388 1388
261 Sweden 28155 A 1388 1388
262 Sweden 28156 T 1388 1388
263 Sweden 28157 T 1388 1388
264 Sweden 28158 A 1388 1388
265 Sweden 28159 A 1388 1388
266 Sweden 28160 T 1388 1388
267 Sweden 28161 T 1388 1388
268 Sweden 28162 G 1388 1388
269 Sweden 28163 C 1388 1388
270 Sweden 28164 C 1388 1388
271 Sweden 28165 A 1388 1388
272 Sweden 28166 G 1388 1388
273 Sweden 28167 G A 1388 1384 Glu92Lys
274 Sweden 28168 A 1388 1388
275 Sweden 28169 A 1388 1388
276 Sweden 28170 C 1388 1388
277 Sweden 28171 C T 1388 1385 Pro93Leu
278 Sweden 28172 T 1388 1388
279 Sweden 28173 A 1388 1388
280 Sweden 28174 A 1388 1388
281 Sweden 28175 A 1388 1388
282 Sweden 28176 T 1388 1388
283 Sweden 28177 T 1388 1388
284 Sweden 28178 G T 1388 1387 Leu95Phe
285 Sweden 28179 G 1388 1388
286 Sweden 28180 G 1388 1388
287 Sweden 28181 T 1388 1388
288 Sweden 28182 A 1388 1388
289 Sweden 28183 G 1388 1388
290 Sweden 28184 T 1388 1388
291 Sweden 28185 C T 1388 1386 Leu98Phe
292 Sweden 28186 T 1388 1388
293 Sweden 28187 T 1388 1388
294 Sweden 28188 G 1388 1388
295 Sweden 28189 T 1388 1388
296 Sweden 28190 A 1388 1388
297 Sweden 28191 G 1388 1388
298 Sweden 28192 T 1388 1388
299 Sweden 28193 G 1388 1388
300 Sweden 28194 C 1388 1388
301 Sweden 28195 G 1388 1388
302 Sweden 28196 T 1388 1388
303 Sweden 28197 T 1388 1388
304 Sweden 28198 G 1388 1388
305 Sweden 28199 T 1388 1388
306 Sweden 28200 T 1388 1388
307 Sweden 28201 C 1388 1388
308 Sweden 28202 G 1388 1388
309 Sweden 28203 T 1388 1388
310 Sweden 28204 T 1388 1388
311 Sweden 28205 C 1388 1388
312 Sweden 28206 T 1388 1388
313 Sweden 28207 A 1388 1388
314 Sweden 28208 T 1388 1388
315 Sweden 28209 G 1388 1388
316 Sweden 28210 A 1388 1388
317 Sweden 28211 A 1388 1388
318 Sweden 28212 G 1388 1388
319 Sweden 28213 A 1388 1388
320 Sweden 28214 C 1388 1388
321 Sweden 28215 T 1388 1388
322 Sweden 28216 T 1388 1388
323 Sweden 28217 T 1388 1388
324 Sweden 28218 T 1388 1388
325 Sweden 28219 T 1388 1388
326 Sweden 28220 A 1388 1388
327 Sweden 28221 G T,C 1388 1384 Glu110*-p.Glu110Gln
328 Sweden 28222 A 1388 1388
329 Sweden 28223 G 1388 1388
330 Sweden 28224 T 1388 1388
331 Sweden 28225 A 1388 1388
332 Sweden 28226 T 1388 1388
333 Sweden 28227 C 1388 1388
334 Sweden 28228 A 1388 1388
335 Sweden 28229 T 1388 1388
336 Sweden 28230 G 1388 1388
337 Sweden 28231 A 1388 1388
338 Sweden 28232 C 1388 1388
339 Sweden 28233 G 1388 1388
340 Sweden 28234 T 1388 1388
341 Sweden 28235 T 1388 1388
342 Sweden 28236 C 1388 1388
343 Sweden 28237 G T 1388 1387 Arg115Leu
344 Sweden 28238 T 1388 1388
345 Sweden 28239 G 1388 1388
346 Sweden 28240 T 1388 1388
347 Sweden 28241 T 1388 1388
348 Sweden 28242 G T 1388 1387 Val117Phe
349 Sweden 28243 T 1388 1388
350 Sweden 28244 T 1388 1388
351 Sweden 28245 T G 1388 1387 Leu118Val
352 Sweden 28246 T 1388 1388
353 Sweden 28247 A 1388 1388
354 Sweden 28248 G 1388 1388
355 Sweden 28249 A 1388 1388
356 Sweden 28250 T G 1388 1387 Asp119Glu
357 Sweden 28251 T 1387 1387
358 Sweden 28252 T 1387 1387
359 Sweden 28253 C T 1387 1382 Phe120Phe
360 Sweden 28254 A C 1387 1385 Ile121Leu
361 Sweden 28255 T 1387 1387
362 Sweden 28256 C 1387 1387
363 Sweden 28257 T 1387 1387
364 Sweden 28258 A 1387 1387
365 Sweden 28259 A 1386 1386