National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30               1   1                    
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                   1                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Suriname 27894 A 71 71
1 Suriname 27895 T 71 71
2 Suriname 27896 G 71 71
3 Suriname 27897 A 71 71
4 Suriname 27898 A 71 71
5 Suriname 27899 A 71 71
6 Suriname 27900 T 71 71
7 Suriname 27901 T 71 71
8 Suriname 27902 T 71 71
9 Suriname 27903 C 71 71
10 Suriname 27904 T 71 71
11 Suriname 27905 T 71 71
12 Suriname 27906 G 71 71
13 Suriname 27907 T 71 71
14 Suriname 27908 T 71 71
15 Suriname 27909 T 71 71
16 Suriname 27910 T 71 71
17 Suriname 27911 C 71 71
18 Suriname 27912 T 71 71
19 Suriname 27913 T 71 71
20 Suriname 27914 A 71 71
21 Suriname 27915 G 71 71
22 Suriname 27916 G 71 71
23 Suriname 27917 A 71 71
24 Suriname 27918 A 71 71
25 Suriname 27919 T 71 71
26 Suriname 27920 C 71 71
27 Suriname 27921 A 71 71
28 Suriname 27922 T 71 71
29 Suriname 27923 C T 71 67 Ile10Ile
30 Suriname 27924 A 71 71
31 Suriname 27925 C 71 71
32 Suriname 27926 A 71 71
33 Suriname 27927 A 71 71
34 Suriname 27928 C 71 71
35 Suriname 27929 T 71 71
36 Suriname 27930 G 71 71
37 Suriname 27931 T 71 71
38 Suriname 27932 A 71 71
39 Suriname 27933 G 71 71
40 Suriname 27934 C 71 71
41 Suriname 27935 T 71 71
42 Suriname 27936 G 71 71
43 Suriname 27937 C 71 71
44 Suriname 27938 A 71 71
45 Suriname 27939 T 71 71
46 Suriname 27940 T 71 71
47 Suriname 27941 T 71 71
48 Suriname 27942 C 71 71
49 Suriname 27943 A 71 71
50 Suriname 27944 C 71 71
51 Suriname 27945 C 71 71
52 Suriname 27946 A 71 71
53 Suriname 27947 A 71 71
54 Suriname 27948 G 71 71
55 Suriname 27949 A 71 71
56 Suriname 27950 A 71 71
57 Suriname 27951 T 71 71
58 Suriname 27952 G 71 71
59 Suriname 27953 T 71 71
60 Suriname 27954 A 71 71
61 Suriname 27955 G 71 71
62 Suriname 27956 T 71 71
63 Suriname 27957 T 71 71
64 Suriname 27958 T 71 71
65 Suriname 27959 A 71 71
66 Suriname 27960 C 71 71
67 Suriname 27961 A 71 71
68 Suriname 27962 G 71 71
69 Suriname 27963 T 71 71
70 Suriname 27964 C 71 71
71 Suriname 27965 A 71 71
72 Suriname 27966 T 71 71
73 Suriname 27967 G 71 71
74 Suriname 27968 T 71 71
75 Suriname 27969 A 71 71
76 Suriname 27970 C 71 71
77 Suriname 27971 T 71 71
78 Suriname 27972 C 71 71
79 Suriname 27973 A 71 71
80 Suriname 27974 A 71 71
81 Suriname 27975 C 71 71
82 Suriname 27976 A 71 71
83 Suriname 27977 T 71 71
84 Suriname 27978 C 71 71
85 Suriname 27979 A 71 71
86 Suriname 27980 A 71 71
87 Suriname 27981 C 71 71
88 Suriname 27982 C 71 71
89 Suriname 27983 A 71 71
90 Suriname 27984 T 71 71
91 Suriname 27985 A 71 71
92 Suriname 27986 T 71 71
93 Suriname 27987 G 71 71
94 Suriname 27988 T 71 71
95 Suriname 27989 A 71 71
96 Suriname 27990 G 71 71
97 Suriname 27991 T 71 71
98 Suriname 27992 T 71 71
99 Suriname 27993 G 71 71
100 Suriname 27994 A 71 71
101 Suriname 27995 T 71 71
102 Suriname 27996 G 71 71
103 Suriname 27997 A 71 71
104 Suriname 27998 C 71 71
105 Suriname 27999 C 71 71
106 Suriname 28000 C 71 71
107 Suriname 28001 G 71 71
108 Suriname 28002 T 71 71
109 Suriname 28003 G 71 71
110 Suriname 28004 T 71 71
111 Suriname 28005 C 71 71
112 Suriname 28006 C 71 71
113 Suriname 28007 T 71 71
114 Suriname 28008 A 71 71
115 Suriname 28009 T 71 71
116 Suriname 28010 T 71 71
117 Suriname 28011 C 71 71
118 Suriname 28012 A 71 71
119 Suriname 28013 C 71 71
120 Suriname 28014 T 71 71
121 Suriname 28015 T 71 71
122 Suriname 28016 C 71 71
123 Suriname 28017 T 71 71
124 Suriname 28018 A 71 71
125 Suriname 28019 T 71 71
126 Suriname 28020 T 71 71
127 Suriname 28021 C 71 71
128 Suriname 28022 T 71 71
129 Suriname 28023 A 71 71
130 Suriname 28024 A 71 71
131 Suriname 28025 A 71 71
132 Suriname 28026 T 71 71
133 Suriname 28027 G 71 71
134 Suriname 28028 G 71 71
135 Suriname 28029 T 71 71
136 Suriname 28030 A 71 71
137 Suriname 28031 T 71 71
138 Suriname 28032 A 71 71
139 Suriname 28033 T 71 71
140 Suriname 28034 T 71 71
141 Suriname 28035 A 71 71
142 Suriname 28036 G 71 71
143 Suriname 28037 A 71 71
144 Suriname 28038 G 71 71
145 Suriname 28039 T 71 71
146 Suriname 28040 A 71 71
147 Suriname 28041 G 71 71
148 Suriname 28042 G 71 71
149 Suriname 28043 A 71 71
150 Suriname 28044 G 71 71
151 Suriname 28045 C 71 71
152 Suriname 28046 T 71 71
153 Suriname 28047 A 71 71
154 Suriname 28048 G 71 71
155 Suriname 28049 A 71 71
156 Suriname 28050 A 71 71
157 Suriname 28051 A 71 71
158 Suriname 28052 A 71 71
159 Suriname 28053 T 71 71
160 Suriname 28054 C 71 71
161 Suriname 28055 A 71 71
162 Suriname 28056 G 71 71
163 Suriname 28057 C 71 71
164 Suriname 28058 A 71 71
165 Suriname 28059 C 71 71
166 Suriname 28060 C 71 71
167 Suriname 28061 T 71 71
168 Suriname 28062 T 71 71
169 Suriname 28063 T 71 71
170 Suriname 28064 A 71 71
171 Suriname 28065 A 71 71
172 Suriname 28066 T 71 71
173 Suriname 28067 T 71 71
174 Suriname 28068 G 71 71
175 Suriname 28069 A 71 71
176 Suriname 28070 A 71 71
177 Suriname 28071 T 71 71
178 Suriname 28072 T 71 71
179 Suriname 28073 G 71 71
180 Suriname 28074 T 71 71
181 Suriname 28075 G 71 71
182 Suriname 28076 C 71 71
183 Suriname 28077 G T 71 68 Val62Leu
184 Suriname 28078 T 71 71
185 Suriname 28079 G 71 71
186 Suriname 28080 G 71 71
187 Suriname 28081 A 71 71
188 Suriname 28082 T 71 71
189 Suriname 28083 G 71 71
190 Suriname 28084 A 71 71
191 Suriname 28085 G 71 71
192 Suriname 28086 G 71 71
193 Suriname 28087 C 71 71
194 Suriname 28088 T 71 71
195 Suriname 28089 G 71 71
196 Suriname 28090 G 71 71
197 Suriname 28091 T 71 71
198 Suriname 28092 T 71 71
199 Suriname 28093 C 71 71
200 Suriname 28094 T 71 71
201 Suriname 28095 A 71 71
202 Suriname 28096 A 71 71
203 Suriname 28097 A 71 71
204 Suriname 28098 T 71 71
205 Suriname 28099 C 71 71
206 Suriname 28100 A 71 71
207 Suriname 28101 C 71 71
208 Suriname 28102 C 71 71
209 Suriname 28103 C 71 71
210 Suriname 28104 A 71 71
211 Suriname 28105 T 71 71
212 Suriname 28106 T 71 71
213 Suriname 28107 C 71 71
214 Suriname 28108 A 71 71
215 Suriname 28109 G 71 71
216 Suriname 28110 T 71 71
217 Suriname 28111 A 71 71
218 Suriname 28112 C 71 71
219 Suriname 28113 A 71 71
220 Suriname 28114 T 71 71
221 Suriname 28115 C 71 71
222 Suriname 28116 G 71 71
223 Suriname 28117 A 71 71
224 Suriname 28118 T 71 71
225 Suriname 28119 A 71 71
226 Suriname 28120 T 71 71
227 Suriname 28121 C 71 71
228 Suriname 28122 G 71 71
229 Suriname 28123 G 71 71
230 Suriname 28124 T 71 71
231 Suriname 28125 A 71 71
232 Suriname 28126 A 71 71
233 Suriname 28127 T 71 71
234 Suriname 28128 T 71 71
235 Suriname 28129 A 71 71
236 Suriname 28130 T 71 71
237 Suriname 28131 A 71 71
238 Suriname 28132 C 71 71
239 Suriname 28133 A 71 71
240 Suriname 28134 G 71 71
241 Suriname 28135 T 71 71
242 Suriname 28136 T 71 71
243 Suriname 28137 T 71 71
244 Suriname 28138 C 71 71
245 Suriname 28139 C 71 71
246 Suriname 28140 T 71 71
247 Suriname 28141 G 71 71
248 Suriname 28142 T 71 71
249 Suriname 28143 T 71 71
250 Suriname 28144 T 71 71
251 Suriname 28145 A 71 71
252 Suriname 28146 C 71 71
253 Suriname 28147 C 71 71
254 Suriname 28148 T 71 71
255 Suriname 28149 T 71 71
256 Suriname 28150 T 71 71
257 Suriname 28151 T 71 71
258 Suriname 28152 A 71 71
259 Suriname 28153 C 71 71
260 Suriname 28154 A 71 71
261 Suriname 28155 A 71 71
262 Suriname 28156 T 71 71
263 Suriname 28157 T 71 71
264 Suriname 28158 A 71 71
265 Suriname 28159 A 71 71
266 Suriname 28160 T 71 71
267 Suriname 28161 T 71 71
268 Suriname 28162 G 71 71
269 Suriname 28163 C 71 71
270 Suriname 28164 C 71 71
271 Suriname 28165 A 71 71
272 Suriname 28166 G 71 71
273 Suriname 28167 G 71 71
274 Suriname 28168 A 71 71
275 Suriname 28169 A 71 71
276 Suriname 28170 C 71 71
277 Suriname 28171 C 71 71
278 Suriname 28172 T 71 71
279 Suriname 28173 A 71 71
280 Suriname 28174 A 71 71
281 Suriname 28175 A 71 71
282 Suriname 28176 T 71 71
283 Suriname 28177 T 71 71
284 Suriname 28178 G 71 71
285 Suriname 28179 G 71 71
286 Suriname 28180 G 71 71
287 Suriname 28181 T 71 71
288 Suriname 28182 A 68 68
289 Suriname 28183 G 68 68
290 Suriname 28184 T 68 68
291 Suriname 28185 C 68 68
292 Suriname 28186 T 68 68
293 Suriname 28187 T 68 68
294 Suriname 28188 G 68 68
295 Suriname 28189 T 68 68
296 Suriname 28190 A 68 68
297 Suriname 28191 G 68 68
298 Suriname 28192 T 68 68
299 Suriname 28193 G 68 68
300 Suriname 28194 C 68 68
301 Suriname 28195 G 68 68
302 Suriname 28196 T 68 68
303 Suriname 28197 T 68 68
304 Suriname 28198 G 68 68
305 Suriname 28199 T 68 68
306 Suriname 28200 T 68 68
307 Suriname 28201 C 68 68
308 Suriname 28202 G 68 68
309 Suriname 28203 T 68 68
310 Suriname 28204 T 68 68
311 Suriname 28205 C 68 68
312 Suriname 28206 T 68 68
313 Suriname 28207 A 68 68
314 Suriname 28208 T 68 68
315 Suriname 28209 G 68 68
316 Suriname 28210 A 68 68
317 Suriname 28211 A 68 68
318 Suriname 28212 G 68 68
319 Suriname 28213 A 68 68
320 Suriname 28214 C 68 68
321 Suriname 28215 T 68 68
322 Suriname 28216 T 68 68
323 Suriname 28217 T 68 68
324 Suriname 28218 T 68 68
325 Suriname 28219 T 68 68
326 Suriname 28220 A 68 68
327 Suriname 28221 G 68 68
328 Suriname 28222 A 68 68
329 Suriname 28223 G 68 68
330 Suriname 28224 T 68 68
331 Suriname 28225 A 68 68
332 Suriname 28226 T 68 68
333 Suriname 28227 C 68 68
334 Suriname 28228 A 68 68
335 Suriname 28229 T 68 68
336 Suriname 28230 G 68 68
337 Suriname 28231 A 68 68
338 Suriname 28232 C 68 68
339 Suriname 28233 G 68 68
340 Suriname 28234 T 68 68
341 Suriname 28235 T 68 68
342 Suriname 28236 C 68 68
343 Suriname 28237 G 68 68
344 Suriname 28238 T 68 68
345 Suriname 28239 G 68 68
346 Suriname 28240 T 68 68
347 Suriname 28241 T 68 68
348 Suriname 28242 G 68 68
349 Suriname 28243 T 68 68
350 Suriname 28244 T 68 68
351 Suriname 28245 T 68 68
352 Suriname 28246 T 68 68
353 Suriname 28247 A 68 68
354 Suriname 28248 G 68 68
355 Suriname 28249 A 68 68
356 Suriname 28250 T 68 68
357 Suriname 28251 T 68 68
358 Suriname 28252 T 68 68
359 Suriname 28253 C T 68 32 Phe120Phe
360 Suriname 28254 A C 68 67 Ile121Leu
361 Suriname 28255 T 68 68
362 Suriname 28256 C 68 68
363 Suriname 28257 T 68 68
364 Suriname 28258 A 68 68
365 Suriname 28259 A 68 68