National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               2 2 3    
C     21   1     3                     1       1
D     22     5                                 3
E 4   18           2               1       1    
F     24         4         2           2        
G     15   1 1     1                 1     1    
H     12             2                         2
I     30         1     3   1             3 2    
K 1   15                 1                      
L     30         1     1   2           2        
M     3                                        
N     6                                        
P     21                   3     2     2 1      
Q 4   18             2                          
R     12               1   1             1      
S 1   27         1         2           2        
T     15               3                 1      
V     36 3       2     2   5 1             3    
W     3   1               1           1        
Y     21   1         1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Spain 27894 A 7175 7175
1 Spain 27895 T 7175 7175
2 Spain 27896 G 7175 7175
3 Spain 27897 A 7175 7175
4 Spain 27898 A 7175 7175
5 Spain 27899 A 7175 7175
6 Spain 27900 T 7175 7175
7 Spain 27901 T C 7175 7174 Phe3Ser
8 Spain 27902 T 7175 7175
9 Spain 27903 C 7176 7176
10 Spain 27904 T 7176 7176
11 Spain 27905 T 7176 7176
12 Spain 27906 G 7177 7176
13 Spain 27907 T 7177 7176
14 Spain 27908 T 7178 7178
15 Spain 27909 T 7178 7176
16 Spain 27910 T 7178 7178
17 Spain 27911 C T 7178 7175 Phe6Phe
18 Spain 27912 T 7178 7177
19 Spain 27913 T 7178 7178
20 Spain 27914 A 7179 7178
21 Spain 27915 G A 7179 7176 Gly8Arg
22 Spain 27916 G T 7179 7177 Gly8Val
23 Spain 27917 A 7181 7179
24 Spain 27918 A 7181 7180
25 Spain 27919 T C 7181 7177 Ile9Thr
26 Spain 27920 C T 7182 7165 Ile9Ile
27 Spain 27921 A 7182 7182
28 Spain 27922 T C 7182 7181 Ile10Thr
29 Spain 27923 C T 7182 7178 Ile10Ile
30 Spain 27924 A 7182 7182
31 Spain 27925 C T 7182 7172 Thr11Ile
32 Spain 27926 A 7182 7182
33 Spain 27927 A 7182 7182
34 Spain 27928 C 7183 7183
35 Spain 27929 T 7183 7183
36 Spain 27930 G A 7183 7182 Val13Ile
37 Spain 27931 T 7183 7183
38 Spain 27932 A 7183 7183
39 Spain 27933 G 7183 7183
40 Spain 27934 C 7183 7183
41 Spain 27935 T 7183 7183
42 Spain 27936 G 7183 7183
43 Spain 27937 C 7183 7182
44 Spain 27938 A 7183 7182
45 Spain 27939 T 7183 7182
46 Spain 27940 T 7183 7182
47 Spain 27941 T C 7183 7181 Phe16Phe
48 Spain 27942 C T 7183 7180 His17Tyr
49 Spain 27943 A 7183 7182
50 Spain 27944 C T 7183 6149 His17His
51 Spain 27945 C T 7183 7169 Gln18*
52 Spain 27946 A 7183 7182
53 Spain 27947 A T 7183 7182 Gln18His
54 Spain 27948 G T 7183 7178 Glu19*
55 Spain 27949 A 7183 7183
56 Spain 27950 A 7183 7183
57 Spain 27951 T 7183 7183
58 Spain 27952 G A 7183 7182 Cys20Tyr
59 Spain 27953 T 7183 7183
60 Spain 27954 A 7183 7182
61 Spain 27955 G 7184 7184
62 Spain 27956 T 7184 7184
63 Spain 27957 T 7184 7184
64 Spain 27958 T C 7184 7182 Leu22Ser
65 Spain 27959 A 7184 7184
66 Spain 27960 C T 7184 7182 Gln23*
67 Spain 27961 A 7184 7184
68 Spain 27962 G 7185 7185
69 Spain 27963 T 7185 7185
70 Spain 27964 C T,A 7185 7181 Ser24*-p.Ser24Leu
71 Spain 27965 A G 7185 7174 Ser24Ser
72 Spain 27966 T 7185 7185
73 Spain 27967 G T 7185 7183 Cys25Phe
74 Spain 27968 T 7187 7186
75 Spain 27969 A 7187 7187
76 Spain 27970 C T 7187 7185 Thr26Ile
77 Spain 27971 T 7187 7187
78 Spain 27972 C T 7187 6983 Gln27*
79 Spain 27973 A 7187 7187
80 Spain 27974 A 7187 7187
81 Spain 27975 C 7187 7187
82 Spain 27976 A 7187 7187
83 Spain 27977 T 7187 7187
84 Spain 27978 C T 7187 7184 Gln29*
85 Spain 27979 A 7187 7187
86 Spain 27980 A 7187 7187
87 Spain 27981 C T 7187 7182 Pro30Ser
88 Spain 27982 C T 7187 7007 Pro30Leu
89 Spain 27983 A 7188 7188
90 Spain 27984 T 7188 7188
91 Spain 27985 A 7188 7188
92 Spain 27986 T 7188 7188
93 Spain 27987 G T 7188 7187 Val32Leu
94 Spain 27988 T 7188 7188
95 Spain 27989 A G 7188 7187 Val32Val
96 Spain 27990 G 7188 7188
97 Spain 27991 T C 7188 7185 Val33Ala
98 Spain 27992 T 7188 7188
99 Spain 27993 G 7188 7188
100 Spain 27994 A 7188 7188
101 Spain 27995 T 7188 7188
102 Spain 27996 G T 7188 7181 Asp35Tyr
103 Spain 27997 A 7188 7187
104 Spain 27998 C T 7188 7183 Asp35Asp
105 Spain 27999 C 7188 7187
106 Spain 28000 C T 7188 7183 Pro36Leu
107 Spain 28001 G T 7189 7186 Pro36Pro
108 Spain 28002 T 7189 7189
109 Spain 28003 G T 7189 7184 Cys37Phe
110 Spain 28004 T 7189 7189
111 Spain 28005 C T 7189 7186 Pro38Ser
112 Spain 28006 C T 7189 7186 Pro38Leu
113 Spain 28007 T A 7189 7188 Pro38Pro
114 Spain 28008 A 7191 7190
115 Spain 28009 T 7191 7191
116 Spain 28010 T 7191 7191
117 Spain 28011 C T 7191 7189 His40Tyr
118 Spain 28012 A 7191 7190
119 Spain 28013 C 7191 7190
120 Spain 28014 T 7191 7189
121 Spain 28015 T 7191 7189
122 Spain 28016 C 7191 7189
123 Spain 28017 T 7191 7189
124 Spain 28018 A 7192 7192
125 Spain 28019 T 7192 7192
126 Spain 28020 T 7192 7192
127 Spain 28021 C 7192 7192
128 Spain 28022 T 7192 7190
129 Spain 28023 A 7192 7192
130 Spain 28024 A 7192 7191
131 Spain 28025 A G 7192 7190 Lys44Lys
132 Spain 28026 T 7192 7192
133 Spain 28027 G T,C 7192 7188 Trp45Leu-p.Trp45Ser
134 Spain 28028 G T 7192 7191 Trp45Cys
135 Spain 28029 T 7192 7192
136 Spain 28030 A 7192 7192
137 Spain 28031 T 7193 7193
138 Spain 28032 A 7193 7193
139 Spain 28033 T 7193 7193
140 Spain 28034 T 7193 7193
141 Spain 28035 A 7193 7193
142 Spain 28036 G 7193 7193
143 Spain 28037 A 7193 7192
144 Spain 28038 G 7193 7193
145 Spain 28039 T 7193 7189
146 Spain 28040 A 7193 7189
147 Spain 28041 G 7193 7188
148 Spain 28042 G 7193 7188
149 Spain 28043 A 7193 7188
150 Spain 28044 G T 7193 7187 Ala51Ser
151 Spain 28045 C T 7193 7187 Ala51Val
152 Spain 28046 T 7193 7188
153 Spain 28047 A 7193 7188
154 Spain 28048 G T,C 7193 6992 Arg52Ile-p.Arg52Thr
155 Spain 28049 A 7193 7188
156 Spain 28050 A 7193 7188
157 Spain 28051 A 7193 7187
158 Spain 28052 A 7193 7187
159 Spain 28053 T 7193 7187
160 Spain 28054 C T 7193 7182 Ser54Leu
161 Spain 28055 A 7193 7188
162 Spain 28056 G A 7193 7187 Ala55Thr
163 Spain 28057 C T 7193 7186 Ala55Val
164 Spain 28058 A 7193 7188
165 Spain 28059 C 7194 7188
166 Spain 28060 C 7194 7188
167 Spain 28061 T 7194 7188
168 Spain 28062 T C 7194 7187 Leu57Leu
169 Spain 28063 T 7194 7187
170 Spain 28064 A 7194 7187
171 Spain 28065 A G 7194 7168 Ile58Val
172 Spain 28066 T 7194 7186
173 Spain 28067 T 7194 7186
174 Spain 28068 G 7194 7186
175 Spain 28069 A 7194 7185
176 Spain 28070 A 7194 7185
177 Spain 28071 T 7194 7185
178 Spain 28072 T 7194 7185
179 Spain 28073 G 7194 7186
180 Spain 28074 T 7193 7183
181 Spain 28075 G 7193 7183
182 Spain 28076 C T 7193 7181 Cys61Cys
183 Spain 28077 G T,A 7193 7164 Val62Leu-p.Val62Met
184 Spain 28078 T 7193 7183
185 Spain 28079 G T,A 7193 7177 Val62Val-p.Val62Val
186 Spain 28080 G 7193 7185
187 Spain 28081 A 7193 7184
188 Spain 28082 T C 7193 7176 Asp63Asp
189 Spain 28083 G T 7193 7163 Glu64*
190 Spain 28084 A T 7193 7178 Glu64Val
191 Spain 28085 G 7193 7178
192 Spain 28086 G T,A 7194 7151 Ala65Ser-p.Ala65Thr
193 Spain 28087 C T 7194 7169 Ala65Val
194 Spain 28088 T 7195 7183
195 Spain 28089 G T 7361 7359 Gly66Cys
196 Spain 28090 G 7375 7374
197 Spain 28091 T 7375 7374
198 Spain 28092 T 7375 7374
199 Spain 28093 C T 7375 7371 Ser67Phe
200 Spain 28094 T 7375 7373
201 Spain 28095 A T 7375 7342 Lys68*
202 Spain 28096 A 7376 7375
203 Spain 28097 A 7376 7375
204 Spain 28098 T 7376 7375
205 Spain 28099 C 7376 7375
206 Spain 28100 A 7376 7375
207 Spain 28101 C A 7377 7374 Pro70Thr
208 Spain 28102 C 7377 7376
209 Spain 28103 C 7377 7376
210 Spain 28104 A T,G 7377 7373 Ile71Phe-p.Ile71Val
211 Spain 28105 T 7375 7371
212 Spain 28106 T 7375 7371
213 Spain 28107 C 7375 7372
214 Spain 28108 A 7375 7372
215 Spain 28109 G T 7375 7359 Gln72His
216 Spain 28110 T 7375 7372
217 Spain 28111 A G 7375 7186 Tyr73Cys
218 Spain 28112 C 7375 7372
219 Spain 28113 A 7375 7372
220 Spain 28114 T 7375 7372
221 Spain 28115 C 7375 7371
222 Spain 28116 G 7375 7372
223 Spain 28117 A 7375 7372
224 Spain 28118 T C 7375 7371 Asp75Asp
225 Spain 28119 A 7375 7372
226 Spain 28120 T C 7375 7371 Ile76Thr
227 Spain 28121 C T 7375 7371 Ile76Ile
228 Spain 28122 G 7375 7372
229 Spain 28123 G 7375 7372
230 Spain 28124 T 7375 7372
231 Spain 28125 A 7375 7372
232 Spain 28126 A 7375 7372
233 Spain 28127 T 7375 7372
234 Spain 28128 T 7375 7372
235 Spain 28129 A 7375 7371
236 Spain 28130 T C 7375 7367 Tyr79Tyr
237 Spain 28131 A 7375 7372
238 Spain 28132 C 7375 7372
239 Spain 28133 A T 7375 7371 Thr80Thr
240 Spain 28134 G T,A 7376 7368 Val81Phe-p.Val81Ile
241 Spain 28135 T C 7376 7372 Val81Ala
242 Spain 28136 T 7376 7373
243 Spain 28137 T 7376 7373
244 Spain 28138 C 7376 7372
245 Spain 28139 C T 7376 7371 Ser82Ser
246 Spain 28140 T 7376 7373
247 Spain 28141 G T 7376 7372 Cys83Phe
248 Spain 28142 T 7376 7373
249 Spain 28143 T 7376 7373
250 Spain 28144 T C 7376 5982 Leu84Ser
251 Spain 28145 A 7376 7373
252 Spain 28146 C 7376 7373
253 Spain 28147 C 7376 7373
254 Spain 28148 T 7376 7372
255 Spain 28149 T C 7376 7373 Phe86Leu
256 Spain 28150 T 7376 7374
257 Spain 28151 T 7376 7374
258 Spain 28152 A 7376 7374
259 Spain 28153 C T 7376 7358 Thr87Ile
260 Spain 28154 A 7376 7374
261 Spain 28155 A 7376 7374
262 Spain 28156 T 7376 7374
263 Spain 28157 T 7376 7375
264 Spain 28158 A 7376 7375
265 Spain 28159 A 7376 7375
266 Spain 28160 T 7376 7375
267 Spain 28161 T 7376 7375
268 Spain 28162 G 7375 7373
269 Spain 28163 C 7375 7374
270 Spain 28164 C 7375 7374
271 Spain 28165 A 7374 7373
272 Spain 28166 G 7374 7372
273 Spain 28167 G 7374 7373
274 Spain 28168 A 7376 7375
275 Spain 28169 A 7376 7375
276 Spain 28170 C 7376 7375
277 Spain 28171 C 7376 7375
278 Spain 28172 T 7376 7375
279 Spain 28173 A 7378 7377
280 Spain 28174 A 7378 7377
281 Spain 28175 A 7378 7377
282 Spain 28176 T 7379 7379
283 Spain 28177 T 7379 7379
284 Spain 28178 G T 7379 7375 Leu95Phe
285 Spain 28179 G 7379 7379
286 Spain 28180 G A 7379 7378 Gly96Asp
287 Spain 28181 T C 7379 7378 Gly96Gly
288 Spain 28182 A 7379 7379
289 Spain 28183 G 7379 7378
290 Spain 28184 T 7379 7379
291 Spain 28185 C A 7379 7378 Leu98Ile
292 Spain 28186 T 7379 7379
293 Spain 28187 T 7379 7379
294 Spain 28188 G T 7379 7374 Val99Leu
295 Spain 28189 T C 7379 7375 Val99Ala
296 Spain 28190 A 7379 7379
297 Spain 28191 G T,C 7379 7377 Val100Leu-p.Val100Leu
298 Spain 28192 T 7379 7379
299 Spain 28193 G 7379 7379
300 Spain 28194 C 7379 7379
301 Spain 28195 G 7379 7379
302 Spain 28196 T 7379 7379
303 Spain 28197 T 7379 7379
304 Spain 28198 G C 7379 7376 Cys102Ser
305 Spain 28199 T 7379 7379
306 Spain 28200 T 7379 7379
307 Spain 28201 C 7379 7378
308 Spain 28202 G 7379 7378
309 Spain 28203 T 7379 7379
310 Spain 28204 T C 7379 7375 Phe104Ser
311 Spain 28205 C T 7379 7378 Phe104Phe
312 Spain 28206 T 7379 7379
313 Spain 28207 A 7379 7379
314 Spain 28208 T 7379 7379
315 Spain 28209 G T,C 7379 7370 Glu106*-p.Glu106Gln
316 Spain 28210 A G 7379 7378 Glu106Gly
317 Spain 28211 A 7379 7379
318 Spain 28212 G 7379 7378
319 Spain 28213 A 7379 7379
320 Spain 28214 C T 7379 7377 Asp107Asp
321 Spain 28215 T 7379 7379
322 Spain 28216 T 7379 7378
323 Spain 28217 T 7379 7379
324 Spain 28218 T 7379 7379
325 Spain 28219 T 7379 7379
326 Spain 28220 A 7379 7379
327 Spain 28221 G T 7379 7377 Glu110*
328 Spain 28222 A G 7379 7374 Glu110Gly
329 Spain 28223 G 7379 7379
330 Spain 28224 T C 7379 7378 Tyr111His
331 Spain 28225 A 7380 7380
332 Spain 28226 T 7380 7380
333 Spain 28227 C 7380 7380
334 Spain 28228 A 7380 7380
335 Spain 28229 T C 7380 7379 His112His
336 Spain 28230 G T 7380 7378 Asp113Tyr
337 Spain 28231 A 7380 7380
338 Spain 28232 C T 7379 7376 Asp113Asp
339 Spain 28233 G 7379 7379
340 Spain 28234 T 7379 7379
341 Spain 28235 T 7379 7379
342 Spain 28236 C 7379 7378
343 Spain 28237 G T 7379 7373 Arg115Leu
344 Spain 28238 T 7379 7379
345 Spain 28239 G 7379 7378
346 Spain 28240 T 7379 7379
347 Spain 28241 T 7379 7379
348 Spain 28242 G T 7379 7375 Val117Phe
349 Spain 28243 T 7379 7379
350 Spain 28244 T 7379 7379
351 Spain 28245 T 7379 7379
352 Spain 28246 T 7379 7379
353 Spain 28247 A G 7379 7378 Leu118Leu
354 Spain 28248 G T 7379 7377 Asp119Tyr
355 Spain 28249 A 7379 7379
356 Spain 28250 T 7379 7379
357 Spain 28251 T 7378 7378
358 Spain 28252 T 7378 7378
359 Spain 28253 C T,G 7378 7324 Phe120Leu-p.Phe120Phe
360 Spain 28254 A C 7377 7371 Ile121Leu
361 Spain 28255 T 7377 7377
362 Spain 28256 C 7377 7377
363 Spain 28257 T 7377 7377
364 Spain 28258 A 7377 7377
365 Spain 28259 A 7377 7377