National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1   1    
C     21         1                              
D     22     2                                  
E 2   18     1           1         1            
F     24         1                              
G     15                                        
H     12             1                          
I     30               1       1                
K 1   15                                        
L     30         1                     1   1 1  
M     3                                        
N     6                                        
P     21             1     1     1     2 1      
Q 1   18                           1            
R     12               1                        
S     27               1   3     1     1        
T     15                                 1      
V     36         1         3                    
W     3                   1                    
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 27894 A 1630 1630
1 South_Korea 27895 T 1630 1630
2 South_Korea 27896 G 1630 1630
3 South_Korea 27897 A 1630 1630
4 South_Korea 27898 A 1630 1630
5 South_Korea 27899 A 1630 1630
6 South_Korea 27900 T 1630 1630
7 South_Korea 27901 T 1630 1630
8 South_Korea 27902 T 1630 1630
9 South_Korea 27903 C 1630 1630
10 South_Korea 27904 T 1630 1630
11 South_Korea 27905 T 1630 1630
12 South_Korea 27906 G 1630 1630
13 South_Korea 27907 T 1630 1630
14 South_Korea 27908 T 1630 1630
15 South_Korea 27909 T 1630 1630
16 South_Korea 27910 T 1630 1630
17 South_Korea 27911 C 1630 1630
18 South_Korea 27912 T 1630 1630
19 South_Korea 27913 T 1630 1630
20 South_Korea 27914 A 1630 1630
21 South_Korea 27915 G 1630 1630
22 South_Korea 27916 G 1630 1630
23 South_Korea 27917 A 1630 1630
24 South_Korea 27918 A 1630 1630
25 South_Korea 27919 T 1630 1630
26 South_Korea 27920 C T 1630 1629 Ile9Ile
27 South_Korea 27921 A 1630 1630
28 South_Korea 27922 T 1630 1630
29 South_Korea 27923 C 1630 1630
30 South_Korea 27924 A 1630 1630
31 South_Korea 27925 C 1630 1630
32 South_Korea 27926 A 1630 1630
33 South_Korea 27927 A 1630 1630
34 South_Korea 27928 C 1630 1630
35 South_Korea 27929 T 1630 1630
36 South_Korea 27930 G 1630 1630
37 South_Korea 27931 T 1630 1630
38 South_Korea 27932 A 1630 1630
39 South_Korea 27933 G T 1630 1629 Ala14Ser
40 South_Korea 27934 C 1630 1630
41 South_Korea 27935 T 1630 1630
42 South_Korea 27936 G 1630 1628
43 South_Korea 27937 C 1630 1628
44 South_Korea 27938 A 1630 1628
45 South_Korea 27939 T 1630 1628
46 South_Korea 27940 T 1630 1628
47 South_Korea 27941 T 1630 1628
48 South_Korea 27942 C 1630 1628
49 South_Korea 27943 A 1630 1628
50 South_Korea 27944 C T 1630 1620 His17His
51 South_Korea 27945 C 1630 1628
52 South_Korea 27946 A 1630 1628
53 South_Korea 27947 A G 1630 1626 Gln18Gln
54 South_Korea 27948 G 1630 1628
55 South_Korea 27949 A 1630 1628
56 South_Korea 27950 A 1630 1628
57 South_Korea 27951 T 1630 1628
58 South_Korea 27952 G 1630 1628
59 South_Korea 27953 T 1630 1628
60 South_Korea 27954 A 1630 1628
61 South_Korea 27955 G 1630 1630
62 South_Korea 27956 T C 1630 1629 Ser21Ser
63 South_Korea 27957 T 1630 1630
64 South_Korea 27958 T 1630 1630
65 South_Korea 27959 A 1630 1630
66 South_Korea 27960 C 1630 1630
67 South_Korea 27961 A 1630 1630
68 South_Korea 27962 G 1630 1630
69 South_Korea 27963 T 1630 1630
70 South_Korea 27964 C T 1630 1627 Ser24Leu
71 South_Korea 27965 A 1630 1630
72 South_Korea 27966 T 1630 1630
73 South_Korea 27967 G 1630 1630
74 South_Korea 27968 T 1630 1630
75 South_Korea 27969 A 1630 1630
76 South_Korea 27970 C 1630 1630
77 South_Korea 27971 T 1630 1630
78 South_Korea 27972 C T 1630 1617 Gln27*
79 South_Korea 27973 A 1630 1630
80 South_Korea 27974 A 1630 1630
81 South_Korea 27975 C 1630 1630
82 South_Korea 27976 A 1630 1630
83 South_Korea 27977 T 1630 1630
84 South_Korea 27978 C 1630 1630
85 South_Korea 27979 A 1630 1629
86 South_Korea 27980 A 1630 1629
87 South_Korea 27981 C 1630 1629
88 South_Korea 27982 C T 1630 1628 Pro30Leu
89 South_Korea 27983 A 1630 1629
90 South_Korea 27984 T 1630 1629
91 South_Korea 27985 A 1630 1629
92 South_Korea 27986 T 1630 1629
93 South_Korea 27987 G T 1630 1628 Val32Leu
94 South_Korea 27988 T 1630 1629
95 South_Korea 27989 A 1630 1629
96 South_Korea 27990 G 1630 1630
97 South_Korea 27991 T 1630 1630
98 South_Korea 27992 T 1630 1630
99 South_Korea 27993 G 1630 1630
100 South_Korea 27994 A 1630 1630
101 South_Korea 27995 T C 1630 1629 Asp34Asp
102 South_Korea 27996 G 1630 1630
103 South_Korea 27997 A 1630 1630
104 South_Korea 27998 C T 1630 1628 Asp35Asp
105 South_Korea 27999 C T 1630 1629 Pro36Ser
106 South_Korea 28000 C 1630 1630
107 South_Korea 28001 G 1630 1630
108 South_Korea 28002 T 1630 1630
109 South_Korea 28003 G 1630 1630
110 South_Korea 28004 T 1630 1630
111 South_Korea 28005 C T 1630 1629 Pro38Ser
112 South_Korea 28006 C 1630 1630
113 South_Korea 28007 T C 1630 1628 Pro38Pro
114 South_Korea 28008 A 1630 1629
115 South_Korea 28009 T A 1630 1628 Ile39Asn
116 South_Korea 28010 T 1630 1629
117 South_Korea 28011 C 1630 1629
118 South_Korea 28012 A 1630 1629
119 South_Korea 28013 C 1630 1629
120 South_Korea 28014 T 1630 1629
121 South_Korea 28015 T 1630 1629
122 South_Korea 28016 C 1630 1629
123 South_Korea 28017 T 1630 1629
124 South_Korea 28018 A 1630 1629
125 South_Korea 28019 T 1630 1629
126 South_Korea 28020 T 1630 1629
127 South_Korea 28021 C 1630 1629
128 South_Korea 28022 T 1630 1629
129 South_Korea 28023 A T 1630 1628 Lys44*
130 South_Korea 28024 A 1630 1629
131 South_Korea 28025 A 1630 1629
132 South_Korea 28026 T 1630 1629
133 South_Korea 28027 G T 1630 1628 Trp45Leu
134 South_Korea 28028 G 1630 1630
135 South_Korea 28029 T 1630 1630
136 South_Korea 28030 A 1630 1630
137 South_Korea 28031 T 1630 1630
138 South_Korea 28032 A 1630 1630
139 South_Korea 28033 T 1630 1630
140 South_Korea 28034 T 1630 1630
141 South_Korea 28035 A 1630 1630
142 South_Korea 28036 G 1630 1630
143 South_Korea 28037 A 1630 1630
144 South_Korea 28038 G 1630 1630
145 South_Korea 28039 T 1630 1630
146 South_Korea 28040 A 1630 1630
147 South_Korea 28041 G 1630 1630
148 South_Korea 28042 G 1630 1630
149 South_Korea 28043 A 1630 1630
150 South_Korea 28044 G 1630 1630
151 South_Korea 28045 C 1631 1631
152 South_Korea 28046 T 1631 1631
153 South_Korea 28047 A 1631 1631
154 South_Korea 28048 G T 1631 1618 Arg52Ile
155 South_Korea 28049 A 1631 1631
156 South_Korea 28050 A 1631 1631
157 South_Korea 28051 A 1631 1631
158 South_Korea 28052 A 1631 1631
159 South_Korea 28053 T C 1631 1627 Ser54Pro
160 South_Korea 28054 C T 1631 1626 Ser54Leu
161 South_Korea 28055 A 1631 1630
162 South_Korea 28056 G 1631 1630
163 South_Korea 28057 C 1631 1630
164 South_Korea 28058 A 1631 1630
165 South_Korea 28059 C 1631 1630
166 South_Korea 28060 C 1631 1630
167 South_Korea 28061 T 1631 1630
168 South_Korea 28062 T 1631 1630
169 South_Korea 28063 T 1631 1630
170 South_Korea 28064 A 1631 1630
171 South_Korea 28065 A 1631 1630
172 South_Korea 28066 T 1631 1630
173 South_Korea 28067 T 1631 1630
174 South_Korea 28068 G 1631 1630
175 South_Korea 28069 A 1631 1630
176 South_Korea 28070 A C 1631 1628 Glu59Asp
177 South_Korea 28071 T 1631 1630
178 South_Korea 28072 T G 1631 1629 Leu60Trp
179 South_Korea 28073 G 1631 1630
180 South_Korea 28074 T 1631 1630
181 South_Korea 28075 G 1631 1630
182 South_Korea 28076 C 1631 1630
183 South_Korea 28077 G C,T 1631 1622 Val62Leu-p.Val62Leu
184 South_Korea 28078 T 1631 1630
185 South_Korea 28079 G 1631 1630
186 South_Korea 28080 G 1631 1630
187 South_Korea 28081 A 1631 1630
188 South_Korea 28082 T 1631 1630
189 South_Korea 28083 G T 1632 1626 Glu64*
190 South_Korea 28084 A 1632 1632
191 South_Korea 28085 G 1632 1632
192 South_Korea 28086 G 1632 1632
193 South_Korea 28087 C T 1632 1627 Ala65Val
194 South_Korea 28088 T 1632 1632
195 South_Korea 28089 G 1632 1632
196 South_Korea 28090 G 1632 1632
197 South_Korea 28091 T 1632 1632
198 South_Korea 28092 T 1632 1632
199 South_Korea 28093 C 1632 1632
200 South_Korea 28094 T 1632 1632
201 South_Korea 28095 A 1632 1632
202 South_Korea 28096 A 1632 1632
203 South_Korea 28097 A 1632 1632
204 South_Korea 28098 T 1632 1632
205 South_Korea 28099 C 1632 1632
206 South_Korea 28100 A 1632 1632
207 South_Korea 28101 C A 1632 1631 Pro70Thr
208 South_Korea 28102 C 1632 1632
209 South_Korea 28103 C 1632 1632
210 South_Korea 28104 A 1632 1632
211 South_Korea 28105 T 1632 1632
212 South_Korea 28106 T 1632 1632
213 South_Korea 28107 C 1632 1632
214 South_Korea 28108 A 1632 1632
215 South_Korea 28109 G 1632 1632
216 South_Korea 28110 T 1632 1632
217 South_Korea 28111 A G 1632 1619 Tyr73Cys
218 South_Korea 28112 C 1632 1632
219 South_Korea 28113 A 1632 1632
220 South_Korea 28114 T 1632 1632
221 South_Korea 28115 C 1632 1632
222 South_Korea 28116 G 1632 1632
223 South_Korea 28117 A 1632 1632
224 South_Korea 28118 T 1632 1632
225 South_Korea 28119 A 1632 1632
226 South_Korea 28120 T 1632 1632
227 South_Korea 28121 C 1632 1632
228 South_Korea 28122 G 1632 1632
229 South_Korea 28123 G 1632 1632
230 South_Korea 28124 T 1632 1632
231 South_Korea 28125 A 1632 1632
232 South_Korea 28126 A 1632 1632
233 South_Korea 28127 T 1632 1632
234 South_Korea 28128 T 1632 1632
235 South_Korea 28129 A 1632 1632
236 South_Korea 28130 T 1632 1632
237 South_Korea 28131 A 1632 1632
238 South_Korea 28132 C 1632 1632
239 South_Korea 28133 A T 1632 1631 Thr80Thr
240 South_Korea 28134 G 1632 1632
241 South_Korea 28135 T 1632 1632
242 South_Korea 28136 T 1632 1632
243 South_Korea 28137 T 1632 1632
244 South_Korea 28138 C 1632 1632
245 South_Korea 28139 C 1632 1632
246 South_Korea 28140 T 1632 1632
247 South_Korea 28141 G 1632 1632
248 South_Korea 28142 T 1632 1632
249 South_Korea 28143 T G 1632 1631 Leu84Val
250 South_Korea 28144 T C 1632 1572 Leu84Ser
251 South_Korea 28145 A 1632 1632
252 South_Korea 28146 C 1632 1632
253 South_Korea 28147 C A 1632 1631 Pro85His
254 South_Korea 28148 T 1632 1632
255 South_Korea 28149 T 1632 1632
256 South_Korea 28150 T 1632 1632
257 South_Korea 28151 T 1632 1632
258 South_Korea 28152 A 1632 1632
259 South_Korea 28153 C 1632 1632
260 South_Korea 28154 A 1632 1632
261 South_Korea 28155 A 1632 1632
262 South_Korea 28156 T 1632 1632
263 South_Korea 28157 T 1632 1632
264 South_Korea 28158 A 1632 1632
265 South_Korea 28159 A 1632 1632
266 South_Korea 28160 T 1632 1632
267 South_Korea 28161 T 1632 1632
268 South_Korea 28162 G 1632 1632
269 South_Korea 28163 C 1632 1632
270 South_Korea 28164 C 1632 1632
271 South_Korea 28165 A 1632 1632
272 South_Korea 28166 G 1632 1632
273 South_Korea 28167 G A 1632 1623 Glu92Lys
274 South_Korea 28168 A 1632 1632
275 South_Korea 28169 A 1632 1632
276 South_Korea 28170 C 1632 1632
277 South_Korea 28171 C 1632 1632
278 South_Korea 28172 T 1632 1632
279 South_Korea 28173 A 1632 1632
280 South_Korea 28174 A 1632 1632
281 South_Korea 28175 A 1632 1632
282 South_Korea 28176 T 1632 1632
283 South_Korea 28177 T 1632 1632
284 South_Korea 28178 G T 1632 1628 Leu95Phe
285 South_Korea 28179 G 1632 1632
286 South_Korea 28180 G 1632 1632
287 South_Korea 28181 T 1632 1632
288 South_Korea 28182 A 1632 1632
289 South_Korea 28183 G T 1632 1631 Ser97Ile
290 South_Korea 28184 T 1632 1632
291 South_Korea 28185 C 1632 1632
292 South_Korea 28186 T 1632 1632
293 South_Korea 28187 T 1632 1632
294 South_Korea 28188 G 1632 1632
295 South_Korea 28189 T 1632 1632
296 South_Korea 28190 A 1632 1632
297 South_Korea 28191 G 1632 1632
298 South_Korea 28192 T 1632 1632
299 South_Korea 28193 G 1632 1632
300 South_Korea 28194 C 1632 1632
301 South_Korea 28195 G 1632 1632
302 South_Korea 28196 T 1632 1632
303 South_Korea 28197 T 1632 1632
304 South_Korea 28198 G T 1632 1630 Cys102Phe
305 South_Korea 28199 T 1632 1632
306 South_Korea 28200 T 1632 1632
307 South_Korea 28201 C T 1632 1631 Ser103Leu
308 South_Korea 28202 G 1632 1632
309 South_Korea 28203 T 1632 1632
310 South_Korea 28204 T 1632 1632
311 South_Korea 28205 C 1632 1632
312 South_Korea 28206 T 1632 1632
313 South_Korea 28207 A 1632 1632
314 South_Korea 28208 T 1632 1632
315 South_Korea 28209 G T 1632 1631 Glu106*
316 South_Korea 28210 A 1632 1632
317 South_Korea 28211 A 1632 1632
318 South_Korea 28212 G 1632 1632
319 South_Korea 28213 A 1632 1632
320 South_Korea 28214 C 1632 1632
321 South_Korea 28215 T 1632 1632
322 South_Korea 28216 T 1632 1632
323 South_Korea 28217 T 1632 1632
324 South_Korea 28218 T 1632 1632
325 South_Korea 28219 T 1632 1632
326 South_Korea 28220 A 1632 1632
327 South_Korea 28221 G C 1632 1631 Glu110Gln
328 South_Korea 28222 A 1632 1632
329 South_Korea 28223 G 1632 1632
330 South_Korea 28224 T 1632 1632
331 South_Korea 28225 A 1632 1632
332 South_Korea 28226 T 1632 1632
333 South_Korea 28227 C 1632 1632
334 South_Korea 28228 A 1632 1632
335 South_Korea 28229 T 1632 1632
336 South_Korea 28230 G 1632 1632
337 South_Korea 28231 A 1632 1632
338 South_Korea 28232 C 1632 1632
339 South_Korea 28233 G T 1632 1631 Val114Phe
340 South_Korea 28234 T 1632 1632
341 South_Korea 28235 T 1632 1632
342 South_Korea 28236 C 1632 1632
343 South_Korea 28237 G 1632 1632
344 South_Korea 28238 T 1632 1632
345 South_Korea 28239 G 1632 1632
346 South_Korea 28240 T 1632 1632
347 South_Korea 28241 T 1632 1632
348 South_Korea 28242 G 1632 1632
349 South_Korea 28243 T 1632 1632
350 South_Korea 28244 T 1632 1632
351 South_Korea 28245 T 1632 1632
352 South_Korea 28246 T 1632 1632
353 South_Korea 28247 A 1632 1632
354 South_Korea 28248 G 1632 1632
355 South_Korea 28249 A 1632 1632
356 South_Korea 28250 T 1632 1632
357 South_Korea 28251 T 1632 1632
358 South_Korea 28252 T 1632 1632
359 South_Korea 28253 C T 1632 1626 Phe120Phe
360 South_Korea 28254 A 1632 1632
361 South_Korea 28255 T 1632 1632
362 South_Korea 28256 C 1632 1632
363 South_Korea 28257 T 1632 1632
364 South_Korea 28258 A 1632 1632
365 South_Korea 28259 A 1632 1632