National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 1         1                   2   2    
C     21   1     2                   1          
D     22     4                 1               1
E 5   18 1   2 1         1                      
F     24         1         1               1    
G     15   1       1                       1    
H     12                           1            
I     30               4   1           1 1      
K     15               1 2                      
L     30         1         2           2        
M     3                                        
N     6               1                        
P     21 1                 2     2     1        
Q 2   18                   1       1            
R     12   1         1 1 1                      
S 1   27         1         1           2        
T     15 1             3                        
V     36 2             1   3               2    
W     3                                        
Y 1   21             1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 27894 A 3007 3007
1 South_Africa 27895 T 3007 3007
2 South_Africa 27896 G 3007 3007
3 South_Africa 27897 A 3007 3007
4 South_Africa 27898 A T 3008 3005 Lys2Ile
5 South_Africa 27899 A G 3008 3006 Lys2Lys
6 South_Africa 27900 T 3008 3008
7 South_Africa 27901 T 3008 3008
8 South_Africa 27902 T 3008 3008
9 South_Africa 27903 C 3008 3008
10 South_Africa 27904 T 3008 3008
11 South_Africa 27905 T 3008 3008
12 South_Africa 27906 G 3008 3008
13 South_Africa 27907 T 3008 3008
14 South_Africa 27908 T 3008 3008
15 South_Africa 27909 T 3008 3008
16 South_Africa 27910 T 3008 3008
17 South_Africa 27911 C 3008 3008
18 South_Africa 27912 T 3008 3008
19 South_Africa 27913 T 3008 3008
20 South_Africa 27914 A 3008 3008
21 South_Africa 27915 G 3008 3008
22 South_Africa 27916 G T 3008 3007 Gly8Val
23 South_Africa 27917 A 3008 3008
24 South_Africa 27918 A 3008 3008
25 South_Africa 27919 T 3008 3008
26 South_Africa 27920 C T 3008 3003 Ile9Ile
27 South_Africa 27921 A 3008 3008
28 South_Africa 27922 T G 3008 3006 Ile10Ser
29 South_Africa 27923 C T 3009 3007 Ile10Ile
30 South_Africa 27924 A 3009 3009
31 South_Africa 27925 C T 3009 3008 Thr11Ile
32 South_Africa 27926 A 3009 3009
33 South_Africa 27927 A G 3009 3008 Thr12Ala
34 South_Africa 27928 C 3009 3009
35 South_Africa 27929 T 3009 3009
36 South_Africa 27930 G 3009 3009
37 South_Africa 27931 T 3009 3008
38 South_Africa 27932 A G 3009 3007 Val13Val
39 South_Africa 27933 G 3009 3008
40 South_Africa 27934 C 3009 3008
41 South_Africa 27935 T A 3009 3005 Ala14Ala
42 South_Africa 27936 G 3009 3008
43 South_Africa 27937 C 3009 3008
44 South_Africa 27938 A 3009 3008
45 South_Africa 27939 T 3009 3008
46 South_Africa 27940 T 3009 3008
47 South_Africa 27941 T 3009 3008
48 South_Africa 27942 C 3009 3008
49 South_Africa 27943 A 3011 3010
50 South_Africa 27944 C 3011 3010
51 South_Africa 27945 C T 3011 3007 Gln18*
52 South_Africa 27946 A 3011 3010
53 South_Africa 27947 A 3011 3010
54 South_Africa 27948 G T 3011 3010 Glu19*
55 South_Africa 27949 A C 3011 3009 Glu19Ala
56 South_Africa 27950 A 3011 3011
57 South_Africa 27951 T C 3011 3010 Cys20Arg
58 South_Africa 27952 G 3011 3011
59 South_Africa 27953 T 3011 3011
60 South_Africa 27954 A 3011 3011
61 South_Africa 27955 G 3011 3011
62 South_Africa 27956 T 3011 3010
63 South_Africa 27957 T 3011 3010
64 South_Africa 27958 T 3011 3010
65 South_Africa 27959 A 3011 3010
66 South_Africa 27960 C 3011 3010
67 South_Africa 27961 A 3011 3010
68 South_Africa 27962 G 3012 3011
69 South_Africa 27963 T 3012 3011
70 South_Africa 27964 C A 3012 3009 Ser24*
71 South_Africa 27965 A T 3012 3008 Ser24Ser
72 South_Africa 27966 T 3012 3010
73 South_Africa 27967 G T 3012 3009 Cys25Phe
74 South_Africa 27968 T 3012 3011
75 South_Africa 27969 A 3012 3011
76 South_Africa 27970 C T 3012 3008 Thr26Ile
77 South_Africa 27971 T 3012 3011
78 South_Africa 27972 C T 3012 3006 Gln27*
79 South_Africa 27973 A 3012 3011
80 South_Africa 27974 A 3012 3011
81 South_Africa 27975 C 3012 3011
82 South_Africa 27976 A 3012 3011
83 South_Africa 27977 T 3012 3011
84 South_Africa 27978 C 3012 3011
85 South_Africa 27979 A 3012 3011
86 South_Africa 27980 A 3012 3011
87 South_Africa 27981 C 3012 3011
88 South_Africa 27982 C T 3012 3010 Pro30Leu
89 South_Africa 27983 A 3012 3011
90 South_Africa 27984 T C 3012 3010 Tyr31His
91 South_Africa 27985 A 3012 3011
92 South_Africa 27986 T G 3012 3010 Tyr31*
93 South_Africa 27987 G 3012 3011
94 South_Africa 27988 T 3012 3011
95 South_Africa 27989 A 3012 3011
96 South_Africa 27990 G A 3012 3009 Val33Ile
97 South_Africa 27991 T 3012 3011
98 South_Africa 27992 T 3012 3011
99 South_Africa 27993 G 3012 3011
100 South_Africa 27994 A 3012 3011
101 South_Africa 27995 T C 3012 3010 Asp34Asp
102 South_Africa 27996 G 3013 3013
103 South_Africa 27997 A 3013 3013
104 South_Africa 27998 C T 3013 3008 Asp35Asp
105 South_Africa 27999 C 3013 3013
106 South_Africa 28000 C T 3013 3012 Pro36Leu
107 South_Africa 28001 G T 3013 3009 Pro36Pro
108 South_Africa 28002 T 3013 3013
109 South_Africa 28003 G 3014 3014
110 South_Africa 28004 T 3014 3014
111 South_Africa 28005 C T,G 3014 2987 Pro38Ser-p.Pro38Ala
112 South_Africa 28006 C 3014 3014
113 South_Africa 28007 T 3014 3014
114 South_Africa 28008 A 3014 3014
115 South_Africa 28009 T C 3014 3013 Ile39Thr
116 South_Africa 28010 T 3014 3014
117 South_Africa 28011 C 3014 3014
118 South_Africa 28012 A 3014 3014
119 South_Africa 28013 C A 3014 3013 His40Gln
120 South_Africa 28014 T 3014 3014
121 South_Africa 28015 T 3014 3014
122 South_Africa 28016 C 3014 3014
123 South_Africa 28017 T 3014 3014
124 South_Africa 28018 A 3014 3014
125 South_Africa 28019 T 3014 3014
126 South_Africa 28020 T 3014 3014
127 South_Africa 28021 C 3014 3014
128 South_Africa 28022 T 3014 3014
129 South_Africa 28023 A 3014 3014
130 South_Africa 28024 A 3014 3014
131 South_Africa 28025 A G 3014 3013 Lys44Lys
132 South_Africa 28026 T 3014 3014
133 South_Africa 28027 G 3015 3015
134 South_Africa 28028 G 3015 3015
135 South_Africa 28029 T 3015 3015
136 South_Africa 28030 A 3015 3015
137 South_Africa 28031 T 3015 3015
138 South_Africa 28032 A 3015 3015
139 South_Africa 28033 T 3015 3015
140 South_Africa 28034 T 3015 3015
141 South_Africa 28035 A 3015 3015
142 South_Africa 28036 G 3015 3015
143 South_Africa 28037 A 3015 3014
144 South_Africa 28038 G 3015 3014
145 South_Africa 28039 T 3015 3014
146 South_Africa 28040 A 3015 3014
147 South_Africa 28041 G 3015 3014
148 South_Africa 28042 G 3016 3015
149 South_Africa 28043 A 3017 3015
150 South_Africa 28044 G T 3017 3014 Ala51Ser
151 South_Africa 28045 C T 3017 3013 Ala51Val
152 South_Africa 28046 T 3017 3015
153 South_Africa 28047 A 3017 3015
154 South_Africa 28048 G T,A 3017 3012 Arg52Ile-p.Arg52Lys
155 South_Africa 28049 A 3017 3015
156 South_Africa 28050 A 3017 3015
157 South_Africa 28051 A 3017 3015
158 South_Africa 28052 A 3017 3015
159 South_Africa 28053 T 3017 3015
160 South_Africa 28054 C T 3017 3013 Ser54Leu
161 South_Africa 28055 A 3017 3015
162 South_Africa 28056 G 3017 3015
163 South_Africa 28057 C 3017 3015
164 South_Africa 28058 A 3017 3015
165 South_Africa 28059 C 3017 3015
166 South_Africa 28060 C 3018 3016
167 South_Africa 28061 T 3018 3016
168 South_Africa 28062 T 3018 3016
169 South_Africa 28063 T C 3018 3015 Leu57Ser
170 South_Africa 28064 A 3018 3016
171 South_Africa 28065 A 3018 3016
172 South_Africa 28066 T 3018 3016
173 South_Africa 28067 T 3018 3016
174 South_Africa 28068 G T 3018 3014 Glu59*
175 South_Africa 28069 A 3018 3015
176 South_Africa 28070 A C 3018 3014 Glu59Asp
177 South_Africa 28071 T 3018 3015
178 South_Africa 28072 T 3018 3015
179 South_Africa 28073 G 3018 3014
180 South_Africa 28074 T 3017 3011
181 South_Africa 28075 G T 3017 3011 Cys61Phe
182 South_Africa 28076 C 3017 3011
183 South_Africa 28077 G T,C 3017 2927 Val62Leu-p.Val62Leu
184 South_Africa 28078 T 3017 3011
185 South_Africa 28079 G T 3017 3010 Val62Val
186 South_Africa 28080 G A 3017 3010 Asp63Asn
187 South_Africa 28081 A 3017 3011
188 South_Africa 28082 T 3021 3015
189 South_Africa 28083 G T 3025 3018 Glu64*
190 South_Africa 28084 A 3025 3020
191 South_Africa 28085 G T 3031 3023 Glu64Asp
192 South_Africa 28086 G T 3038 3023 Ala65Ser
193 South_Africa 28087 C T,G 3040 3010 Ala65Val-p.Ala65Gly
194 South_Africa 28088 T 3042 3039
195 South_Africa 28089 G T 3059 3057 Gly66Cys
196 South_Africa 28090 G 3062 3060
197 South_Africa 28091 T 3062 3060
198 South_Africa 28092 T 3062 3060
199 South_Africa 28093 C T 3062 3057 Ser67Phe
200 South_Africa 28094 T 3062 3060
201 South_Africa 28095 A 3062 3060
202 South_Africa 28096 A 3062 3062
203 South_Africa 28097 A 3062 3062
204 South_Africa 28098 T 3062 3061
205 South_Africa 28099 C 3062 3061
206 South_Africa 28100 A 3062 3061
207 South_Africa 28101 C 3062 3061
208 South_Africa 28102 C 3062 3061
209 South_Africa 28103 C T 3062 3058 Pro70Pro
210 South_Africa 28104 A 3062 3061
211 South_Africa 28105 T 3062 3061
212 South_Africa 28106 T 3062 3061
213 South_Africa 28107 C 3062 3061
214 South_Africa 28108 A T 3062 3060 Gln72Leu
215 South_Africa 28109 G 3062 3061
216 South_Africa 28110 T 3062 3061
217 South_Africa 28111 A 3062 3061
218 South_Africa 28112 C T 3062 3060 Tyr73Tyr
219 South_Africa 28113 A 3062 3061
220 South_Africa 28114 T 3062 3061
221 South_Africa 28115 C T 3062 3059 Ile74Ile
222 South_Africa 28116 G 3062 3062
223 South_Africa 28117 A 3062 3062
224 South_Africa 28118 T 3062 3062
225 South_Africa 28119 A 3062 3062
226 South_Africa 28120 T 3062 3062
227 South_Africa 28121 C 3062 3062
228 South_Africa 28122 G 3062 3062
229 South_Africa 28123 G 3062 3062
230 South_Africa 28124 T C 3062 3060 Gly77Gly
231 South_Africa 28125 A 3062 3062
232 South_Africa 28126 A 3062 3062
233 South_Africa 28127 T 3062 3062
234 South_Africa 28128 T 3062 3062
235 South_Africa 28129 A 3062 3062
236 South_Africa 28130 T 3062 3062
237 South_Africa 28131 A 3062 3062
238 South_Africa 28132 C 3062 3062
239 South_Africa 28133 A 3062 3062
240 South_Africa 28134 G 3063 3063
241 South_Africa 28135 T C 3063 3062 Val81Ala
242 South_Africa 28136 T 3063 3063
243 South_Africa 28137 T 3063 3063
244 South_Africa 28138 C 3063 3063
245 South_Africa 28139 C T 3063 3062 Ser82Ser
246 South_Africa 28140 T 3063 3063
247 South_Africa 28141 G 3063 3063
248 South_Africa 28142 T 3063 3063
249 South_Africa 28143 T 3063 3063
250 South_Africa 28144 T C 3063 3059 Leu84Ser
251 South_Africa 28145 A 3063 3063
252 South_Africa 28146 C 3063 3063
253 South_Africa 28147 C 3063 3063
254 South_Africa 28148 T 3063 3063
255 South_Africa 28149 T 3063 3063
256 South_Africa 28150 T 3063 3063
257 South_Africa 28151 T 3063 3063
258 South_Africa 28152 A 3063 3063
259 South_Africa 28153 C T 3063 3060 Thr87Ile
260 South_Africa 28154 A 3063 3063
261 South_Africa 28155 A 3063 3063
262 South_Africa 28156 T 3063 3063
263 South_Africa 28157 T 3063 3063
264 South_Africa 28158 A 3063 3063
265 South_Africa 28159 A T 3063 3062 Asn89Ile
266 South_Africa 28160 T 3064 3064
267 South_Africa 28161 T 3064 3064
268 South_Africa 28162 G 3064 3064
269 South_Africa 28163 C 3064 3064
270 South_Africa 28164 C 3064 3064
271 South_Africa 28165 A 3064 3064
272 South_Africa 28166 G A 3064 3060 Gln91Gln
273 South_Africa 28167 G A 3063 3059 Glu92Lys
274 South_Africa 28168 A 3063 3063
275 South_Africa 28169 A 3063 3063
276 South_Africa 28170 C 3063 3063
277 South_Africa 28171 C 3063 3063
278 South_Africa 28172 T 3063 3063
279 South_Africa 28173 A 3063 3063
280 South_Africa 28174 A 3063 3063
281 South_Africa 28175 A 3063 3063
282 South_Africa 28176 T 3063 3063
283 South_Africa 28177 T 3063 3063
284 South_Africa 28178 G T,A 3063 3053 Leu95Phe-p.Leu95Leu
285 South_Africa 28179 G 3063 3063
286 South_Africa 28180 G 3063 3063
287 South_Africa 28181 T 3063 3063
288 South_Africa 28182 A 3063 3063
289 South_Africa 28183 G 3063 3063
290 South_Africa 28184 T 3063 3063
291 South_Africa 28185 C 3063 3063
292 South_Africa 28186 T 3063 3063
293 South_Africa 28187 T 3063 3063
294 South_Africa 28188 G 3063 3063
295 South_Africa 28189 T 3063 3063
296 South_Africa 28190 A 3063 3063
297 South_Africa 28191 G T 3063 3062 Val100Leu
298 South_Africa 28192 T 3063 3063
299 South_Africa 28193 G 3063 3063
300 South_Africa 28194 C 3063 3063
301 South_Africa 28195 G A 3063 3062 Arg101His
302 South_Africa 28196 T 3063 3063
303 South_Africa 28197 T 3063 3063
304 South_Africa 28198 G 3063 3063
305 South_Africa 28199 T C 3063 3062 Cys102Cys
306 South_Africa 28200 T 3063 3063
307 South_Africa 28201 C 3063 3063
308 South_Africa 28202 G 3063 3063
309 South_Africa 28203 T 3063 3063
310 South_Africa 28204 T 3063 3063
311 South_Africa 28205 C 3063 3063
312 South_Africa 28206 T 3063 3063
313 South_Africa 28207 A 3063 3063
314 South_Africa 28208 T 3063 3063
315 South_Africa 28209 G T 3063 3062 Glu106*
316 South_Africa 28210 A 3063 3063
317 South_Africa 28211 A G 3063 3062 Glu106Glu
318 South_Africa 28212 G 3063 3063
319 South_Africa 28213 A 3063 3063
320 South_Africa 28214 C 3063 3063
321 South_Africa 28215 T 3063 3063
322 South_Africa 28216 T 3063 3063
323 South_Africa 28217 T 3063 3063
324 South_Africa 28218 T 3063 3063
325 South_Africa 28219 T 3063 3063
326 South_Africa 28220 A 3063 3063
327 South_Africa 28221 G T 3063 3061 Glu110*
328 South_Africa 28222 A 3063 3063
329 South_Africa 28223 G 3063 3063
330 South_Africa 28224 T 3063 3063
331 South_Africa 28225 A 3063 3063
332 South_Africa 28226 T 3064 3064
333 South_Africa 28227 C 3064 3064
334 South_Africa 28228 A 3064 3064
335 South_Africa 28229 T 3064 3064
336 South_Africa 28230 G T 3064 3063 Asp113Tyr
337 South_Africa 28231 A 3064 3064
338 South_Africa 28232 C T 3064 3063 Asp113Asp
339 South_Africa 28233 G 3064 3064
340 South_Africa 28234 T 3064 3064
341 South_Africa 28235 T 3064 3064
342 South_Africa 28236 C T 3064 3063 Arg115Cys
343 South_Africa 28237 G 3064 3064
344 South_Africa 28238 T 3064 3064
345 South_Africa 28239 G 3064 3064
346 South_Africa 28240 T C 3064 3063 Val116Ala
347 South_Africa 28241 T 3064 3064
348 South_Africa 28242 G 3064 3064
349 South_Africa 28243 T 3064 3064
350 South_Africa 28244 T 3064 3064
351 South_Africa 28245 T 3064 3064
352 South_Africa 28246 T 3064 3064
353 South_Africa 28247 A G 3064 3063 Leu118Leu
354 South_Africa 28248 G 3064 3064
355 South_Africa 28249 A 3064 3064
356 South_Africa 28250 T C 3064 3056 Asp119Asp
357 South_Africa 28251 T G,C 3062 3060 Phe120Val-p.Phe120Leu
358 South_Africa 28252 T 3062 3062
359 South_Africa 28253 C T 3062 2470 Phe120Phe
360 South_Africa 28254 A C 3062 3003 Ile121Leu
361 South_Africa 28255 T 3062 3062
362 South_Africa 28256 C T 3062 3061 Ile121Ile
363 South_Africa 28257 T 3062 3062
364 South_Africa 28258 A 3062 3062
365 South_Africa 28259 A 3062 3062