National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E 2   18                                        
F     24                                        
G     15                                        
H     12             1                          
I     30                                        
K 1   15                                        
L     30         1                              
M     3                                        
N     6                                        
P     21                               1        
Q 1   18             1                          
R     12               1                        
S     27                                        
T     15                 1                      
V     36                                   1    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 27894 A 96 96
1 Slovakia 27895 T 96 96
2 Slovakia 27896 G 96 96
3 Slovakia 27897 A 96 96
4 Slovakia 27898 A 96 96
5 Slovakia 27899 A 96 96
6 Slovakia 27900 T 96 96
7 Slovakia 27901 T 96 96
8 Slovakia 27902 T 96 96
9 Slovakia 27903 C 96 96
10 Slovakia 27904 T 96 96
11 Slovakia 27905 T 96 96
12 Slovakia 27906 G 96 96
13 Slovakia 27907 T 96 96
14 Slovakia 27908 T 96 96
15 Slovakia 27909 T 96 96
16 Slovakia 27910 T 96 96
17 Slovakia 27911 C 96 96
18 Slovakia 27912 T 96 96
19 Slovakia 27913 T 96 96
20 Slovakia 27914 A 96 96
21 Slovakia 27915 G 96 96
22 Slovakia 27916 G 96 96
23 Slovakia 27917 A 96 96
24 Slovakia 27918 A 96 96
25 Slovakia 27919 T 96 96
26 Slovakia 27920 C 96 96
27 Slovakia 27921 A 96 96
28 Slovakia 27922 T 96 96
29 Slovakia 27923 C 96 96
30 Slovakia 27924 A 96 96
31 Slovakia 27925 C A 96 95 Thr11Lys
32 Slovakia 27926 A 96 96
33 Slovakia 27927 A 96 96
34 Slovakia 27928 C 96 96
35 Slovakia 27929 T 96 96
36 Slovakia 27930 G 96 96
37 Slovakia 27931 T 96 96
38 Slovakia 27932 A 96 96
39 Slovakia 27933 G 96 96
40 Slovakia 27934 C 96 96
41 Slovakia 27935 T 96 96
42 Slovakia 27936 G 96 96
43 Slovakia 27937 C 96 96
44 Slovakia 27938 A 96 96
45 Slovakia 27939 T 96 96
46 Slovakia 27940 T 96 96
47 Slovakia 27941 T 96 96
48 Slovakia 27942 C 96 96
49 Slovakia 27943 A 96 96
50 Slovakia 27944 C T 96 88 His17His
51 Slovakia 27945 C 96 96
52 Slovakia 27946 A 96 96
53 Slovakia 27947 A 96 96
54 Slovakia 27948 G 96 96
55 Slovakia 27949 A 96 96
56 Slovakia 27950 A 96 96
57 Slovakia 27951 T 96 96
58 Slovakia 27952 G 96 96
59 Slovakia 27953 T 96 96
60 Slovakia 27954 A 96 96
61 Slovakia 27955 G 96 96
62 Slovakia 27956 T 96 96
63 Slovakia 27957 T 96 96
64 Slovakia 27958 T 96 96
65 Slovakia 27959 A 96 96
66 Slovakia 27960 C 96 96
67 Slovakia 27961 A 96 96
68 Slovakia 27962 G 96 96
69 Slovakia 27963 T 96 96
70 Slovakia 27964 C 96 96
71 Slovakia 27965 A 96 96
72 Slovakia 27966 T 96 96
73 Slovakia 27967 G 96 96
74 Slovakia 27968 T 96 96
75 Slovakia 27969 A 96 96
76 Slovakia 27970 C 96 96
77 Slovakia 27971 T 96 96
78 Slovakia 27972 C T 96 63 Gln27*
79 Slovakia 27973 A 96 96
80 Slovakia 27974 A 96 96
81 Slovakia 27975 C 96 96
82 Slovakia 27976 A 96 96
83 Slovakia 27977 T 96 96
84 Slovakia 27978 C 96 96
85 Slovakia 27979 A 96 96
86 Slovakia 27980 A 96 96
87 Slovakia 27981 C 96 96
88 Slovakia 27982 C 96 96
89 Slovakia 27983 A 96 96
90 Slovakia 27984 T 96 96
91 Slovakia 27985 A 96 96
92 Slovakia 27986 T 96 96
93 Slovakia 27987 G 96 96
94 Slovakia 27988 T 96 96
95 Slovakia 27989 A 96 96
96 Slovakia 27990 G 96 96
97 Slovakia 27991 T 96 96
98 Slovakia 27992 T 96 96
99 Slovakia 27993 G 96 96
100 Slovakia 27994 A 96 96
101 Slovakia 27995 T 96 96
102 Slovakia 27996 G 96 96
103 Slovakia 27997 A 96 96
104 Slovakia 27998 C 96 96
105 Slovakia 27999 C T 96 95 Pro36Ser
106 Slovakia 28000 C 96 96
107 Slovakia 28001 G 96 96
108 Slovakia 28002 T 96 96
109 Slovakia 28003 G 96 96
110 Slovakia 28004 T 96 96
111 Slovakia 28005 C 96 96
112 Slovakia 28006 C 96 96
113 Slovakia 28007 T 96 96
114 Slovakia 28008 A 96 96
115 Slovakia 28009 T 96 96
116 Slovakia 28010 T 96 96
117 Slovakia 28011 C 96 96
118 Slovakia 28012 A 96 96
119 Slovakia 28013 C 96 96
120 Slovakia 28014 T 96 96
121 Slovakia 28015 T 96 96
122 Slovakia 28016 C 96 96
123 Slovakia 28017 T 96 96
124 Slovakia 28018 A 96 96
125 Slovakia 28019 T 96 96
126 Slovakia 28020 T 96 96
127 Slovakia 28021 C 96 96
128 Slovakia 28022 T 96 96
129 Slovakia 28023 A 96 96
130 Slovakia 28024 A 96 96
131 Slovakia 28025 A 96 96
132 Slovakia 28026 T 96 96
133 Slovakia 28027 G 96 96
134 Slovakia 28028 G 96 96
135 Slovakia 28029 T 96 96
136 Slovakia 28030 A 96 96
137 Slovakia 28031 T 96 96
138 Slovakia 28032 A 96 96
139 Slovakia 28033 T 96 96
140 Slovakia 28034 T 96 96
141 Slovakia 28035 A 96 96
142 Slovakia 28036 G 96 96
143 Slovakia 28037 A 96 96
144 Slovakia 28038 G 96 96
145 Slovakia 28039 T 96 96
146 Slovakia 28040 A 96 96
147 Slovakia 28041 G 96 96
148 Slovakia 28042 G 96 96
149 Slovakia 28043 A 96 96
150 Slovakia 28044 G 96 96
151 Slovakia 28045 C 96 96
152 Slovakia 28046 T 96 96
153 Slovakia 28047 A 96 96
154 Slovakia 28048 G T 96 63 Arg52Ile
155 Slovakia 28049 A 96 96
156 Slovakia 28050 A 96 96
157 Slovakia 28051 A 96 96
158 Slovakia 28052 A 96 96
159 Slovakia 28053 T 96 96
160 Slovakia 28054 C 96 96
161 Slovakia 28055 A 96 96
162 Slovakia 28056 G 96 96
163 Slovakia 28057 C 96 96
164 Slovakia 28058 A 96 96
165 Slovakia 28059 C 96 96
166 Slovakia 28060 C 96 96
167 Slovakia 28061 T 96 96
168 Slovakia 28062 T 96 96
169 Slovakia 28063 T 96 96
170 Slovakia 28064 A 96 96
171 Slovakia 28065 A 96 96
172 Slovakia 28066 T 96 96
173 Slovakia 28067 T 96 96
174 Slovakia 28068 G T 96 95 Glu59*
175 Slovakia 28069 A 96 96
176 Slovakia 28070 A 96 96
177 Slovakia 28071 T 96 96
178 Slovakia 28072 T 96 96
179 Slovakia 28073 G 96 96
180 Slovakia 28074 T 96 96
181 Slovakia 28075 G 96 96
182 Slovakia 28076 C 96 96
183 Slovakia 28077 G 96 96
184 Slovakia 28078 T 96 96
185 Slovakia 28079 G 96 96
186 Slovakia 28080 G 96 96
187 Slovakia 28081 A 96 96
188 Slovakia 28082 T 96 96
189 Slovakia 28083 G 96 96
190 Slovakia 28084 A 96 96
191 Slovakia 28085 G 96 96
192 Slovakia 28086 G 96 96
193 Slovakia 28087 C 96 96
194 Slovakia 28088 T 96 96
195 Slovakia 28089 G 96 96
196 Slovakia 28090 G 96 96
197 Slovakia 28091 T 96 96
198 Slovakia 28092 T 96 96
199 Slovakia 28093 C 96 96
200 Slovakia 28094 T 96 96
201 Slovakia 28095 A T 96 74 Lys68*
202 Slovakia 28096 A 96 96
203 Slovakia 28097 A 96 96
204 Slovakia 28098 T 96 96
205 Slovakia 28099 C 96 96
206 Slovakia 28100 A 96 96
207 Slovakia 28101 C 96 96
208 Slovakia 28102 C 96 96
209 Slovakia 28103 C 96 96
210 Slovakia 28104 A 96 96
211 Slovakia 28105 T 96 96
212 Slovakia 28106 T 96 96
213 Slovakia 28107 C 96 96
214 Slovakia 28108 A 96 96
215 Slovakia 28109 G 96 96
216 Slovakia 28110 T 96 96
217 Slovakia 28111 A G 96 63 Tyr73Cys
218 Slovakia 28112 C 96 96
219 Slovakia 28113 A 96 96
220 Slovakia 28114 T 96 96
221 Slovakia 28115 C 96 96
222 Slovakia 28116 G 96 96
223 Slovakia 28117 A 96 96
224 Slovakia 28118 T 96 96
225 Slovakia 28119 A 96 96
226 Slovakia 28120 T 96 96
227 Slovakia 28121 C 96 96
228 Slovakia 28122 G 96 96
229 Slovakia 28123 G 96 96
230 Slovakia 28124 T 96 96
231 Slovakia 28125 A 96 96
232 Slovakia 28126 A 96 96
233 Slovakia 28127 T 96 96
234 Slovakia 28128 T 96 96
235 Slovakia 28129 A 96 96
236 Slovakia 28130 T 96 96
237 Slovakia 28131 A 96 96
238 Slovakia 28132 C 96 96
239 Slovakia 28133 A 96 96
240 Slovakia 28134 G 96 96
241 Slovakia 28135 T 96 96
242 Slovakia 28136 T 96 96
243 Slovakia 28137 T 96 96
244 Slovakia 28138 C 96 96
245 Slovakia 28139 C 96 96
246 Slovakia 28140 T 96 96
247 Slovakia 28141 G 96 96
248 Slovakia 28142 T 96 96
249 Slovakia 28143 T 96 96
250 Slovakia 28144 T 96 96
251 Slovakia 28145 A 96 96
252 Slovakia 28146 C 96 96
253 Slovakia 28147 C 96 96
254 Slovakia 28148 T 96 96
255 Slovakia 28149 T 96 96
256 Slovakia 28150 T 96 96
257 Slovakia 28151 T 96 96
258 Slovakia 28152 A 96 96
259 Slovakia 28153 C 96 96
260 Slovakia 28154 A 96 96
261 Slovakia 28155 A 96 96
262 Slovakia 28156 T 96 96
263 Slovakia 28157 T 96 96
264 Slovakia 28158 A 96 96
265 Slovakia 28159 A 96 96
266 Slovakia 28160 T 96 96
267 Slovakia 28161 T 96 96
268 Slovakia 28162 G 96 96
269 Slovakia 28163 C 96 96
270 Slovakia 28164 C 96 96
271 Slovakia 28165 A 96 96
272 Slovakia 28166 G C 96 95 Gln91His
273 Slovakia 28167 G 96 96
274 Slovakia 28168 A 96 96
275 Slovakia 28169 A 96 96
276 Slovakia 28170 C 96 96
277 Slovakia 28171 C 96 96
278 Slovakia 28172 T 96 96
279 Slovakia 28173 A 96 96
280 Slovakia 28174 A 96 96
281 Slovakia 28175 A 96 96
282 Slovakia 28176 T 96 96
283 Slovakia 28177 T 96 96
284 Slovakia 28178 G T 96 95 Leu95Phe
285 Slovakia 28179 G 96 96
286 Slovakia 28180 G 96 96
287 Slovakia 28181 T 96 96
288 Slovakia 28182 A 96 96
289 Slovakia 28183 G 96 96
290 Slovakia 28184 T 96 96
291 Slovakia 28185 C 96 96
292 Slovakia 28186 T 96 96
293 Slovakia 28187 T 96 96
294 Slovakia 28188 G 96 96
295 Slovakia 28189 T 96 96
296 Slovakia 28190 A 96 96
297 Slovakia 28191 G 96 96
298 Slovakia 28192 T 96 96
299 Slovakia 28193 G T 96 95 Val100Val
300 Slovakia 28194 C 96 96
301 Slovakia 28195 G 96 96
302 Slovakia 28196 T 96 96
303 Slovakia 28197 T 96 96
304 Slovakia 28198 G 96 96
305 Slovakia 28199 T 96 96
306 Slovakia 28200 T 96 96
307 Slovakia 28201 C 96 96
308 Slovakia 28202 G 96 96
309 Slovakia 28203 T 96 96
310 Slovakia 28204 T 96 96
311 Slovakia 28205 C 96 96
312 Slovakia 28206 T 96 96
313 Slovakia 28207 A 96 96
314 Slovakia 28208 T 96 96
315 Slovakia 28209 G T 96 95 Glu106*
316 Slovakia 28210 A 96 96
317 Slovakia 28211 A 96 96
318 Slovakia 28212 G 96 96
319 Slovakia 28213 A 96 96
320 Slovakia 28214 C 96 96
321 Slovakia 28215 T 96 96
322 Slovakia 28216 T 96 96
323 Slovakia 28217 T 96 96
324 Slovakia 28218 T 96 96
325 Slovakia 28219 T 96 96
326 Slovakia 28220 A 96 96
327 Slovakia 28221 G 96 96
328 Slovakia 28222 A 96 96
329 Slovakia 28223 G 96 96
330 Slovakia 28224 T 96 96
331 Slovakia 28225 A 96 96
332 Slovakia 28226 T 96 96
333 Slovakia 28227 C 96 96
334 Slovakia 28228 A 96 96
335 Slovakia 28229 T 96 96
336 Slovakia 28230 G 96 96
337 Slovakia 28231 A 96 96
338 Slovakia 28232 C 96 96
339 Slovakia 28233 G 96 96
340 Slovakia 28234 T 96 96
341 Slovakia 28235 T 96 96
342 Slovakia 28236 C 96 96
343 Slovakia 28237 G 96 96
344 Slovakia 28238 T 96 96
345 Slovakia 28239 G 96 96
346 Slovakia 28240 T 96 96
347 Slovakia 28241 T 96 96
348 Slovakia 28242 G 96 96
349 Slovakia 28243 T 96 96
350 Slovakia 28244 T 96 96
351 Slovakia 28245 T 96 96
352 Slovakia 28246 T 96 96
353 Slovakia 28247 A 96 96
354 Slovakia 28248 G 96 96
355 Slovakia 28249 A 96 96
356 Slovakia 28250 T 96 96
357 Slovakia 28251 T 94 94
358 Slovakia 28252 T 94 94
359 Slovakia 28253 C 94 94
360 Slovakia 28254 A 94 94
361 Slovakia 28255 T 94 94
362 Slovakia 28256 C 94 94
363 Slovakia 28257 T 94 94
364 Slovakia 28258 A 94 94
365 Slovakia 28259 A 94 94