National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     365                                        
?                                              
A     15                               1   2    
C     21   2     1 1                   1       1
D     22     2     1           1           1   2
E 3   18                 1                      
F     24   1     1                              
G     15       1   1                   1   1    
H     12             2                          
I     30               3   1             1      
K 1   15       1                                
L     30         2         1           1   1    
M     3                                        
N     6                       1                
P     21                   2     1              
Q 3   18             1               1          
R     12               1   1                    
S     27         1     1   1     1              
T     15               2 1               2      
V     35         1     2   4 1             2    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 27894 A 1709 1709
1 Singapore 27895 T 1709 1709
2 Singapore 27896 G 1709 1709
3 Singapore 27897 A 1709 1709
4 Singapore 27898 A 1709 1709
5 Singapore 27899 A 1709 1709
6 Singapore 27900 T 1709 1708
7 Singapore 27901 T G 1709 1708 Phe3Cys
8 Singapore 27902 T 1709 1709
9 Singapore 27903 C T 1709 1708 Leu4Phe
10 Singapore 27904 T 1709 1709
11 Singapore 27905 T 1709 1709
12 Singapore 27906 G 1709 1709
13 Singapore 27907 T 1709 1709
14 Singapore 27908 T 1709 1709
15 Singapore 27909 T 1709 1709
16 Singapore 27910 T 1709 1709
17 Singapore 27911 C 1709 1709
18 Singapore 27912 T 1709 1709
19 Singapore 27913 T 1709 1709
20 Singapore 27914 A 1709 1709
21 Singapore 27915 G 1709 1709
22 Singapore 27916 G A 1709 1707 Gly8Glu
23 Singapore 27917 A 1709 1709
24 Singapore 27918 A 1709 1709
25 Singapore 27919 T 1709 1708
26 Singapore 27920 C A 1709 1708 Ile9Ile
27 Singapore 27921 A 1709 1709
28 Singapore 27922 T 1709 1709
29 Singapore 27923 C T 1709 1708 Ile10Ile
30 Singapore 27924 A 1709 1709
31 Singapore 27925 C T,A 1709 1703 Thr11Ile-p.Thr11Lys
32 Singapore 27926 A G 1709 1704 Thr11Thr
33 Singapore 27927 A 1709 1709
34 Singapore 27928 C 1709 1709
35 Singapore 27929 T 1709 1709
36 Singapore 27930 G 1709 1709
37 Singapore 27931 T 1709 1709
38 Singapore 27932 A G 1709 1707 Val13Val
39 Singapore 27933 G 1709 1709
40 Singapore 27934 C 1709 1709
41 Singapore 27935 T 1709 1709
42 Singapore 27936 G 1709 1709
43 Singapore 27937 C 1709 1709
44 Singapore 27938 A 1709 1709
45 Singapore 27939 T 1709 1709
46 Singapore 27940 T 1709 1709
47 Singapore 27941 T 1709 1709
48 Singapore 27942 C 1709 1709
49 Singapore 27943 A 1709 1709
50 Singapore 27944 C T 1709 1703 His17His
51 Singapore 27945 C T 1709 1708 Gln18*
52 Singapore 27946 A 1709 1709
53 Singapore 27947 A 1709 1709
54 Singapore 27948 G 1709 1709
55 Singapore 27949 A 1709 1709
56 Singapore 27950 A 1709 1709
57 Singapore 27951 T 1709 1709
58 Singapore 27952 G T 1709 1706 Cys20Phe
59 Singapore 27953 T 1709 1708
60 Singapore 27954 A 1709 1709
61 Singapore 27955 G 1709 1709
62 Singapore 27956 T 1709 1709
63 Singapore 27957 T 1709 1709
64 Singapore 27958 T 1709 1709
65 Singapore 27959 A 1709 1709
66 Singapore 27960 C 1709 1709
67 Singapore 27961 A 1709 1709
68 Singapore 27962 G 1709 1709
69 Singapore 27963 T 1709 1709
70 Singapore 27964 C T 1709 1698 Ser24Leu
71 Singapore 27965 A 1709 1709
72 Singapore 27966 T 1709 1709
73 Singapore 27967 G C 1709 1707 Cys25Ser
74 Singapore 27968 T 1709 1709
75 Singapore 27969 A 1709 1709
76 Singapore 27970 C T 1709 1704 Thr26Ile
77 Singapore 27971 T 1709 1708
78 Singapore 27972 C T 1709 1675 Gln27*
79 Singapore 27973 A 1709 1709
80 Singapore 27974 A 1709 1709
81 Singapore 27975 C 1709 1709
82 Singapore 27976 A 1709 1709
83 Singapore 27977 T C 1709 1708 His28His
84 Singapore 27978 C T 1709 1707 Gln29*
85 Singapore 27979 A 1709 1709
86 Singapore 27980 A 1709 1708
87 Singapore 27981 C 1709 1709
88 Singapore 27982 C T 1709 1704 Pro30Leu
89 Singapore 27983 A 1709 1709
90 Singapore 27984 T 1709 1709
91 Singapore 27985 A 1709 1709
92 Singapore 27986 T 1709 1709
93 Singapore 27987 G T 1709 1707 Val32Leu
94 Singapore 27988 T 1709 1709
95 Singapore 27989 A 1709 1709
96 Singapore 27990 G 1709 1709
97 Singapore 27991 T 1709 1709
98 Singapore 27992 T 1709 1709
99 Singapore 27993 G 1709 1709
100 Singapore 27994 A G 1709 1706 Asp34Gly
101 Singapore 27995 T C 1709 1707 Asp34Asp
102 Singapore 27996 G T,A 1709 1705 Asp35Tyr-p.Asp35Asn
103 Singapore 27997 A 1709 1709
104 Singapore 27998 C T 1709 1706 Asp35Asp
105 Singapore 27999 C 1709 1708
106 Singapore 28000 C 1709 1709
107 Singapore 28001 G T 1709 1707 Pro36Pro
108 Singapore 28002 T 1709 1709
109 Singapore 28003 G 1709 1709
110 Singapore 28004 T 1709 1709
111 Singapore 28005 C 1709 1709
112 Singapore 28006 C 1709 1709
113 Singapore 28007 T 1709 1709
114 Singapore 28008 A 1709 1709
115 Singapore 28009 T C 1709 1707 Ile39Thr
116 Singapore 28010 T 1709 1709
117 Singapore 28011 C 1709 1709
118 Singapore 28012 A 1709 1709
119 Singapore 28013 C 1709 1709
120 Singapore 28014 T 1709 1709
121 Singapore 28015 T 1709 1709
122 Singapore 28016 C 1709 1709
123 Singapore 28017 T 1709 1709
124 Singapore 28018 A 1709 1709
125 Singapore 28019 T 1709 1709
126 Singapore 28020 T C 1709 1708 Ser43Pro
127 Singapore 28021 C 1709 1709
128 Singapore 28022 T 1709 1709
129 Singapore 28023 A 1709 1709
130 Singapore 28024 A 1709 1709
131 Singapore 28025 A 1709 1709
132 Singapore 28026 T 1709 1709
133 Singapore 28027 G 1709 1709
134 Singapore 28028 G 1709 1709
135 Singapore 28029 T 1709 1709
136 Singapore 28030 A 1709 1709
137 Singapore 28031 T 1709 1709
138 Singapore 28032 A 1708 1708
139 Singapore 28033 T 1708 1708
140 Singapore 28034 T 1708 1708
141 Singapore 28035 A 1708 1708
142 Singapore 28036 G 1708 1708
143 Singapore 28037 A 1708 1708
144 Singapore 28038 G 1708 1708
145 Singapore 28039 T 1708 1708
146 Singapore 28040 A 1708 1708
147 Singapore 28041 G 1708 1707
148 Singapore 28042 G 1708 1708
149 Singapore 28043 A 1708 1708
150 Singapore 28044 G 1708 1708
151 Singapore 28045 C T 1708 1703 Ala51Val
152 Singapore 28046 T 1708 1708
153 Singapore 28047 A 1708 1708
154 Singapore 28048 G T 1708 1674 Arg52Ile
155 Singapore 28049 A 1708 1708
156 Singapore 28050 A 1708 1708
157 Singapore 28051 A 1708 1708
158 Singapore 28052 A 1708 1707
159 Singapore 28053 T 1708 1708
160 Singapore 28054 C 1708 1708
161 Singapore 28055 A 1708 1708
162 Singapore 28056 G 1708 1708
163 Singapore 28057 C 1708 1708
164 Singapore 28058 A 1708 1707
165 Singapore 28059 C 1703 1702
166 Singapore 28060 C 1702 1701
167 Singapore 28061 T 1702 1701
168 Singapore 28062 T 1702 1701
169 Singapore 28063 T 1702 1701
170 Singapore 28064 A 1702 1701
171 Singapore 28065 A 1702 1701
172 Singapore 28066 T 1702 1701
173 Singapore 28067 T 1702 1701
174 Singapore 28068 G T 1702 1700 Glu59*
175 Singapore 28069 A 1702 1701
176 Singapore 28070 A 1702 1701
177 Singapore 28071 T 1702 1701
178 Singapore 28072 T 1702 1701
179 Singapore 28073 G 1702 1701
180 Singapore 28074 T 1702 1701
181 Singapore 28075 G 1702 1701
182 Singapore 28076 C 1702 1701
183 Singapore 28077 G T,C,A 1702 1665 Val62Leu-p.Val62Met
184 Singapore 28078 T 1702 1701
185 Singapore 28079 G T 1702 1693 Val62Val
186 Singapore 28080 G 1702 1701
187 Singapore 28081 A T 1702 1700 Asp63Val
188 Singapore 28082 T 1702 1701
189 Singapore 28083 G T 1702 1697 Glu64*
190 Singapore 28084 A 1702 1701
191 Singapore 28085 G 1702 1701
192 Singapore 28086 G T 1702 1682 Ala65Ser
193 Singapore 28087 C T 1702 1700 Ala65Val
194 Singapore 28088 T 1702 1701
195 Singapore 28089 G A 1702 1700 Gly66Ser
196 Singapore 28090 G 1702 1701
197 Singapore 28091 T G 1702 1701 Gly66Gly
198 Singapore 28092 T 1702 1702
199 Singapore 28093 C T 1702 1695 Ser67Phe
200 Singapore 28094 T 1702 1701
201 Singapore 28095 A T,G 1702 1689 Lys68*-p.Lys68Glu
202 Singapore 28096 A 1702 1702
203 Singapore 28097 A 1702 1702
204 Singapore 28098 T 1702 1702
205 Singapore 28099 C 1702 1702
206 Singapore 28100 A 1702 1702
207 Singapore 28101 C 1702 1702
208 Singapore 28102 C T 1702 1701 Pro70Leu
209 Singapore 28103 C 1702 1702
210 Singapore 28104 A 1702 1702
211 Singapore 28105 T 1702 1702
212 Singapore 28106 T 1702 1702
213 Singapore 28107 C 1702 1702
214 Singapore 28108 A 1702 1702
215 Singapore 28109 G T 1702 1701 Gln72His
216 Singapore 28110 T 1702 1702
217 Singapore 28111 A G 1702 1668 Tyr73Cys
218 Singapore 28112 C 1703 1703
219 Singapore 28113 A 1703 1703
220 Singapore 28114 T 1703 1703
221 Singapore 28115 C 1703 1703
222 Singapore 28116 G 1703 1703
223 Singapore 28117 A 1703 1703
224 Singapore 28118 T 1703 1703
225 Singapore 28119 A 1703 1703
226 Singapore 28120 T 1703 1703
227 Singapore 28121 C 1703 1703
228 Singapore 28122 G 1703 1703
229 Singapore 28123 G 1703 1703
230 Singapore 28124 T 1703 1703
231 Singapore 28125 A 1703 1703
232 Singapore 28126 A 1703 1703
233 Singapore 28127 T 1703 1703
234 Singapore 28128 T 1703 1703
235 Singapore 28129 A 1703 1703
236 Singapore 28130 T 1703 1703
237 Singapore 28131 A 1703 1703
238 Singapore 28132 C 1703 1703
239 Singapore 28133 A T 1703 1682 Thr80Thr
240 Singapore 28134 G 1703 1703
241 Singapore 28135 T 1703 1703
242 Singapore 28136 T 1703 1703
243 Singapore 28137 T 1703 1703
244 Singapore 28138 C 1703 1703
245 Singapore 28139 C 1703 1703
246 Singapore 28140 T 1703 1703
247 Singapore 28141 G A 1703 1701 Cys83Tyr
248 Singapore 28142 T C 1703 1702 Cys83Cys
249 Singapore 28143 T 1704 1704
250 Singapore 28144 T C 1704 1682 Leu84Ser
251 Singapore 28145 A 1704 1703
252 Singapore 28146 C 1704 1703
253 Singapore 28147 C 1704 1703
254 Singapore 28148 T 1704 1702
255 Singapore 28149 T 1704 1703
256 Singapore 28150 T 1704 1703
257 Singapore 28151 T 1704 1703
258 Singapore 28152 A 1704 1703
259 Singapore 28153 C 1704 1702
260 Singapore 28154 A 1704 1703
261 Singapore 28155 A 1704 1703
262 Singapore 28156 T 1704 1702
263 Singapore 28157 T 1705 1704
264 Singapore 28158 A 1705 1704
265 Singapore 28159 A 1705 1704
266 Singapore 28160 T C 1705 1703 Asn89Asn
267 Singapore 28161 T 1705 1704
268 Singapore 28162 G 1706 1706
269 Singapore 28163 C T 1706 1704 Cys90Cys
270 Singapore 28164 C 1706 1706
271 Singapore 28165 A G 1706 1705 Gln91Arg
272 Singapore 28166 G 1706 1706
273 Singapore 28167 G A 1708 1707 Glu92Lys
274 Singapore 28168 A 1708 1708
275 Singapore 28169 A 1708 1708
276 Singapore 28170 C 1708 1708
277 Singapore 28171 C 1708 1708
278 Singapore 28172 T 1708 1708
279 Singapore 28173 A 1708 1708
280 Singapore 28174 A 1708 1708
281 Singapore 28175 A 1708 1708
282 Singapore 28176 T 1708 1708
283 Singapore 28177 T 1708 1708
284 Singapore 28178 G T,A 1708 1701 Leu95Phe-p.Leu95Leu
285 Singapore 28179 G 1708 1708
286 Singapore 28180 G T 1708 1705 Gly96Val
287 Singapore 28181 T 1708 1708
288 Singapore 28182 A 1708 1708
289 Singapore 28183 G T 1708 1700 Ser97Ile
290 Singapore 28184 T 1708 1708
291 Singapore 28185 C 1708 1708
292 Singapore 28186 T 1708 1708
293 Singapore 28187 T 1708 1708
294 Singapore 28188 G A 1708 1707 Val99Ile
295 Singapore 28189 T 1708 1708
296 Singapore 28190 A 1708 1708
297 Singapore 28191 G T 1708 1707 Val100Leu
298 Singapore 28192 T 1708 1708
299 Singapore 28193 G 1708 1708
300 Singapore 28194 C 1708 1708
301 Singapore 28195 G 1708 1708
302 Singapore 28196 T 1708 1708
303 Singapore 28197 T G 1708 1707 Cys102Gly
304 Singapore 28198 G 1708 1708
305 Singapore 28199 T 1708 1708
306 Singapore 28200 T 1708 1708
307 Singapore 28201 C 1708 1708
308 Singapore 28202 G 1708 1708
309 Singapore 28203 T 1708 1708
310 Singapore 28204 T 1708 1708
311 Singapore 28205 C 1708 1708
312 Singapore 28206 T 1708 1708
313 Singapore 28207 A 1708 1708
314 Singapore 28208 T 1708 1708
315 Singapore 28209 G T 1708 1705 Glu106*
316 Singapore 28210 A 1708 1708
317 Singapore 28211 A 1708 1708
318 Singapore 28212 G T 1708 1707 Asp107Tyr
319 Singapore 28213 A 1708 1708
320 Singapore 28214 C 1708 1708
321 Singapore 28215 T 1708 1708
322 Singapore 28216 T 1708 1708
323 Singapore 28217 T 1708 1708
324 Singapore 28218 T 1708 1708
325 Singapore 28219 T 1708 1708
326 Singapore 28220 A 1708 1708
327 Singapore 28221 G 1708 1708
328 Singapore 28222 A 1708 1708
329 Singapore 28223 G 1708 1708
330 Singapore 28224 T 1708 1708
331 Singapore 28225 A 1708 1708
332 Singapore 28226 T 1708 1708
333 Singapore 28227 C 1708 1707
334 Singapore 28228 A 1708 1708
335 Singapore 28229 T 1709 1709
336 Singapore 28230 G 1724 1724
337 Singapore 28231 A 1724 1724
338 Singapore 28232 C 1724 1724
339 Singapore 28233 G A 1724 1722 Val114Ile
340 Singapore 28234 T 1724 1724
341 Singapore 28235 T 1724 1724
342 Singapore 28236 C 1724 1724
343 Singapore 28237 G T 1724 1723 Arg115Leu
344 Singapore 28238 T 1724 1724
345 Singapore 28239 G 1724 1724
346 Singapore 28240 T 1724 1724
347 Singapore 28241 T 1724 1724
348 Singapore 28242 G T 1724 1721 Val117Phe
349 Singapore 28243 T 1724 1724
350 Singapore 28244 T 1724 1724
351 Singapore 28245 T G 1724 1723 Leu118Val
352 Singapore 28246 T 1724 1724
353 Singapore 28247 A 1724 1724
354 Singapore 28248 G 1724 1724
355 Singapore 28249 A 1724 1724
356 Singapore 28250 T 1724 1724
357 Singapore 28251 T 1724 1724
358 Singapore 28252 T 1724 1724
359 Singapore 28253 C T 1724 1707 Phe120Phe
360 Singapore 28254 A C 1724 1718 Ile121Leu
361 Singapore 28255 T 1724 1724
362 Singapore 28256 C A 1724 1720 Ile121Ile
363 Singapore 28257 T 1724 1724
364 Singapore 28258 A 1724 1724
365 Singapore 28259 A 1724 1724