National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15           1                            
C     21                                        
D     22                       1                
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 27894 A 132 132
1 Senegal 27895 T 132 132
2 Senegal 27896 G 132 132
3 Senegal 27897 A 132 132
4 Senegal 27898 A 132 132
5 Senegal 27899 A 132 132
6 Senegal 27900 T 132 132
7 Senegal 27901 T 132 132
8 Senegal 27902 T 132 132
9 Senegal 27903 C 132 132
10 Senegal 27904 T 132 132
11 Senegal 27905 T 132 132
12 Senegal 27906 G 132 132
13 Senegal 27907 T 132 132
14 Senegal 27908 T 132 132
15 Senegal 27909 T 132 132
16 Senegal 27910 T 132 132
17 Senegal 27911 C 132 132
18 Senegal 27912 T 132 132
19 Senegal 27913 T 132 132
20 Senegal 27914 A 132 132
21 Senegal 27915 G 132 132
22 Senegal 27916 G 132 132
23 Senegal 27917 A 132 132
24 Senegal 27918 A 132 132
25 Senegal 27919 T 132 132
26 Senegal 27920 C 132 132
27 Senegal 27921 A 132 132
28 Senegal 27922 T 132 132
29 Senegal 27923 C 132 132
30 Senegal 27924 A 132 132
31 Senegal 27925 C 132 132
32 Senegal 27926 A 132 132
33 Senegal 27927 A 132 132
34 Senegal 27928 C 132 132
35 Senegal 27929 T 132 132
36 Senegal 27930 G 132 132
37 Senegal 27931 T 132 132
38 Senegal 27932 A 132 132
39 Senegal 27933 G 132 132
40 Senegal 27934 C 132 132
41 Senegal 27935 T 132 132
42 Senegal 27936 G 132 132
43 Senegal 27937 C 132 132
44 Senegal 27938 A 132 132
45 Senegal 27939 T 132 132
46 Senegal 27940 T 132 132
47 Senegal 27941 T 132 132
48 Senegal 27942 C 132 132
49 Senegal 27943 A 132 132
50 Senegal 27944 C 132 132
51 Senegal 27945 C 132 132
52 Senegal 27946 A 132 132
53 Senegal 27947 A 132 132
54 Senegal 27948 G 132 132
55 Senegal 27949 A 132 132
56 Senegal 27950 A 132 132
57 Senegal 27951 T 132 132
58 Senegal 27952 G 132 132
59 Senegal 27953 T 132 132
60 Senegal 27954 A 132 132
61 Senegal 27955 G 132 132
62 Senegal 27956 T 132 132
63 Senegal 27957 T 132 132
64 Senegal 27958 T 132 132
65 Senegal 27959 A 132 132
66 Senegal 27960 C 132 132
67 Senegal 27961 A 132 131
68 Senegal 27962 G 133 133
69 Senegal 27963 T 133 133
70 Senegal 27964 C 133 133
71 Senegal 27965 A 133 133
72 Senegal 27966 T 133 133
73 Senegal 27967 G 134 134
74 Senegal 27968 T 134 134
75 Senegal 27969 A 134 134
76 Senegal 27970 C 134 134
77 Senegal 27971 T 134 134
78 Senegal 27972 C 134 134
79 Senegal 27973 A 134 134
80 Senegal 27974 A 134 134
81 Senegal 27975 C 134 134
82 Senegal 27976 A 134 134
83 Senegal 27977 T 134 134
84 Senegal 27978 C 134 134
85 Senegal 27979 A 134 134
86 Senegal 27980 A 134 134
87 Senegal 27981 C 134 134
88 Senegal 27982 C 134 134
89 Senegal 27983 A 134 134
90 Senegal 27984 T 134 134
91 Senegal 27985 A 134 134
92 Senegal 27986 T 134 134
93 Senegal 27987 G 134 134
94 Senegal 27988 T 134 134
95 Senegal 27989 A 134 134
96 Senegal 27990 G 134 134
97 Senegal 27991 T 134 134
98 Senegal 27992 T 134 134
99 Senegal 27993 G 134 134
100 Senegal 27994 A 134 134
101 Senegal 27995 T 134 134
102 Senegal 27996 G 134 134
103 Senegal 27997 A 134 134
104 Senegal 27998 C 134 134
105 Senegal 27999 C 134 134
106 Senegal 28000 C 134 134
107 Senegal 28001 G 135 135
108 Senegal 28002 T 135 135
109 Senegal 28003 G 135 135
110 Senegal 28004 T 136 136
111 Senegal 28005 C 136 136
112 Senegal 28006 C 136 136
113 Senegal 28007 T 136 136
114 Senegal 28008 A 136 136
115 Senegal 28009 T 136 136
116 Senegal 28010 T 136 136
117 Senegal 28011 C 136 136
118 Senegal 28012 A 136 136
119 Senegal 28013 C 136 136
120 Senegal 28014 T 136 136
121 Senegal 28015 T 136 136
122 Senegal 28016 C 136 136
123 Senegal 28017 T 136 136
124 Senegal 28018 A 136 136
125 Senegal 28019 T 136 136
126 Senegal 28020 T 136 136
127 Senegal 28021 C 136 136
128 Senegal 28022 T 136 136
129 Senegal 28023 A 136 136
130 Senegal 28024 A 136 136
131 Senegal 28025 A 136 136
132 Senegal 28026 T 136 136
133 Senegal 28027 G 136 136
134 Senegal 28028 G 136 136
135 Senegal 28029 T 136 136
136 Senegal 28030 A 136 136
137 Senegal 28031 T 136 136
138 Senegal 28032 A 136 136
139 Senegal 28033 T 136 136
140 Senegal 28034 T 136 136
141 Senegal 28035 A 136 136
142 Senegal 28036 G 136 136
143 Senegal 28037 A 136 136
144 Senegal 28038 G 136 136
145 Senegal 28039 T 136 136
146 Senegal 28040 A 136 136
147 Senegal 28041 G 136 136
148 Senegal 28042 G 136 136
149 Senegal 28043 A 136 136
150 Senegal 28044 G 136 136
151 Senegal 28045 C 136 136
152 Senegal 28046 T 136 136
153 Senegal 28047 A 136 136
154 Senegal 28048 G 136 136
155 Senegal 28049 A 136 136
156 Senegal 28050 A 136 136
157 Senegal 28051 A 136 136
158 Senegal 28052 A 136 136
159 Senegal 28053 T 136 136
160 Senegal 28054 C 136 136
161 Senegal 28055 A 136 136
162 Senegal 28056 G 136 136
163 Senegal 28057 C 136 136
164 Senegal 28058 A 136 136
165 Senegal 28059 C 136 136
166 Senegal 28060 C 136 136
167 Senegal 28061 T 136 136
168 Senegal 28062 T 136 136
169 Senegal 28063 T 136 136
170 Senegal 28064 A 136 136
171 Senegal 28065 A 136 136
172 Senegal 28066 T 136 136
173 Senegal 28067 T 136 136
174 Senegal 28068 G 136 136
175 Senegal 28069 A 136 136
176 Senegal 28070 A 136 136
177 Senegal 28071 T 136 136
178 Senegal 28072 T 136 136
179 Senegal 28073 G 136 136
180 Senegal 28074 T 136 136
181 Senegal 28075 G 136 136
182 Senegal 28076 C 136 136
183 Senegal 28077 G 136 136
184 Senegal 28078 T 136 136
185 Senegal 28079 G 136 136
186 Senegal 28080 G 136 136
187 Senegal 28081 A 136 136
188 Senegal 28082 T 136 135
189 Senegal 28083 G 136 135
190 Senegal 28084 A 136 135
191 Senegal 28085 G 136 135
192 Senegal 28086 G 136 136
193 Senegal 28087 C G 136 134 Ala65Gly
194 Senegal 28088 T 136 135
195 Senegal 28089 G 136 136
196 Senegal 28090 G 136 136
197 Senegal 28091 T 136 136
198 Senegal 28092 T 136 136
199 Senegal 28093 C 136 136
200 Senegal 28094 T 136 136
201 Senegal 28095 A 136 136
202 Senegal 28096 A 136 136
203 Senegal 28097 A 136 136
204 Senegal 28098 T 136 136
205 Senegal 28099 C 136 136
206 Senegal 28100 A 136 136
207 Senegal 28101 C 136 136
208 Senegal 28102 C 136 136
209 Senegal 28103 C 136 136
210 Senegal 28104 A 136 136
211 Senegal 28105 T 136 136
212 Senegal 28106 T 136 136
213 Senegal 28107 C 136 136
214 Senegal 28108 A 136 136
215 Senegal 28109 G 136 136
216 Senegal 28110 T 136 136
217 Senegal 28111 A 136 136
218 Senegal 28112 C 136 136
219 Senegal 28113 A 136 136
220 Senegal 28114 T 136 136
221 Senegal 28115 C 136 136
222 Senegal 28116 G A 136 135 Asp75Asn
223 Senegal 28117 A 136 136
224 Senegal 28118 T 136 136
225 Senegal 28119 A 136 136
226 Senegal 28120 T 136 136
227 Senegal 28121 C 136 136
228 Senegal 28122 G 136 136
229 Senegal 28123 G 136 136
230 Senegal 28124 T 136 136
231 Senegal 28125 A 136 136
232 Senegal 28126 A 136 136
233 Senegal 28127 T 136 136
234 Senegal 28128 T 136 136
235 Senegal 28129 A 136 136
236 Senegal 28130 T 136 136
237 Senegal 28131 A 136 136
238 Senegal 28132 C 136 136
239 Senegal 28133 A 136 136
240 Senegal 28134 G 136 136
241 Senegal 28135 T 136 136
242 Senegal 28136 T 136 136
243 Senegal 28137 T 136 136
244 Senegal 28138 C 136 136
245 Senegal 28139 C 136 136
246 Senegal 28140 T 136 136
247 Senegal 28141 G 136 136
248 Senegal 28142 T 136 136
249 Senegal 28143 T 136 136
250 Senegal 28144 T C 136 132 Leu84Ser
251 Senegal 28145 A 136 136
252 Senegal 28146 C 136 136
253 Senegal 28147 C 136 136
254 Senegal 28148 T 136 136
255 Senegal 28149 T 136 136
256 Senegal 28150 T 136 136
257 Senegal 28151 T 136 136
258 Senegal 28152 A 136 136
259 Senegal 28153 C 136 136
260 Senegal 28154 A 136 136
261 Senegal 28155 A 136 136
262 Senegal 28156 T 136 136
263 Senegal 28157 T 136 136
264 Senegal 28158 A 136 136
265 Senegal 28159 A 136 136
266 Senegal 28160 T 136 136
267 Senegal 28161 T 136 136
268 Senegal 28162 G 136 136
269 Senegal 28163 C 136 136
270 Senegal 28164 C 136 136
271 Senegal 28165 A 136 136
272 Senegal 28166 G 136 136
273 Senegal 28167 G 136 136
274 Senegal 28168 A 136 136
275 Senegal 28169 A 136 136
276 Senegal 28170 C 136 136
277 Senegal 28171 C 136 135
278 Senegal 28172 T 136 136
279 Senegal 28173 A 136 136
280 Senegal 28174 A 136 136
281 Senegal 28175 A 136 136
282 Senegal 28176 T 136 136
283 Senegal 28177 T 136 136
284 Senegal 28178 G 136 136
285 Senegal 28179 G 136 136
286 Senegal 28180 G 136 136
287 Senegal 28181 T 136 136
288 Senegal 28182 A 136 136
289 Senegal 28183 G 136 136
290 Senegal 28184 T 136 136
291 Senegal 28185 C 136 136
292 Senegal 28186 T 136 136
293 Senegal 28187 T 136 136
294 Senegal 28188 G 136 136
295 Senegal 28189 T 136 136
296 Senegal 28190 A 136 136
297 Senegal 28191 G 136 136
298 Senegal 28192 T 136 136
299 Senegal 28193 G 136 136
300 Senegal 28194 C 136 136
301 Senegal 28195 G 136 136
302 Senegal 28196 T 136 136
303 Senegal 28197 T 136 136
304 Senegal 28198 G 136 136
305 Senegal 28199 T 136 136
306 Senegal 28200 T 136 136
307 Senegal 28201 C 136 136
308 Senegal 28202 G 136 136
309 Senegal 28203 T 136 136
310 Senegal 28204 T 136 136
311 Senegal 28205 C 136 136
312 Senegal 28206 T 136 136
313 Senegal 28207 A 136 136
314 Senegal 28208 T C 136 135 Tyr105Tyr
315 Senegal 28209 G 136 136
316 Senegal 28210 A 136 136
317 Senegal 28211 A 136 136
318 Senegal 28212 G 136 136
319 Senegal 28213 A 136 136
320 Senegal 28214 C 136 136
321 Senegal 28215 T 136 136
322 Senegal 28216 T 136 136
323 Senegal 28217 T 136 136
324 Senegal 28218 T 136 136
325 Senegal 28219 T 136 136
326 Senegal 28220 A 136 136
327 Senegal 28221 G 136 136
328 Senegal 28222 A 136 136
329 Senegal 28223 G 136 136
330 Senegal 28224 T 136 136
331 Senegal 28225 A 136 136
332 Senegal 28226 T 136 136
333 Senegal 28227 C 136 136
334 Senegal 28228 A 136 136
335 Senegal 28229 T 136 136
336 Senegal 28230 G 136 136
337 Senegal 28231 A 136 136
338 Senegal 28232 C 136 136
339 Senegal 28233 G 136 136
340 Senegal 28234 T 136 136
341 Senegal 28235 T 136 136
342 Senegal 28236 C 136 136
343 Senegal 28237 G 136 136
344 Senegal 28238 T 136 136
345 Senegal 28239 G 136 136
346 Senegal 28240 T 136 136
347 Senegal 28241 T 136 136
348 Senegal 28242 G 136 136
349 Senegal 28243 T 136 136
350 Senegal 28244 T 136 136
351 Senegal 28245 T 136 136
352 Senegal 28246 T 136 136
353 Senegal 28247 A 136 136
354 Senegal 28248 G 136 136
355 Senegal 28249 A 136 136
356 Senegal 28250 T 136 136
357 Senegal 28251 T 136 136
358 Senegal 28252 T 136 136
359 Senegal 28253 C 136 136
360 Senegal 28254 A 136 136
361 Senegal 28255 T 136 136
362 Senegal 28256 C 136 136
363 Senegal 28257 T 136 136
364 Senegal 28258 A 136 136
365 Senegal 28259 A 136 136