National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               2   2    
C     21   3     1                              
D     22     2 1   1           1               1
E 4   18     1                             1    
F     24         2                     1        
G     15   2       1                 1 2   1    
H     12             2     1                   1
I     30               2   1             2      
K     15                                        
L     30         2         1           1   1 1  
M     3                                        
N     6                                        
P     21                   4     1   1 1        
Q 1   18             1   1         1            
R     12             1 2 1 2         1          
S     27         1 1       2     1     1        
T     15               3       1         1      
V     36         3     1   2               2    
W     3   1               1                    
Y     21             1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 27894 A 1645 1645
1 Russia 27895 T 1645 1645
2 Russia 27896 G 1645 1645
3 Russia 27897 A 1645 1645
4 Russia 27898 A 1645 1645
5 Russia 27899 A 1645 1645
6 Russia 27900 T 1645 1645
7 Russia 27901 T 1645 1645
8 Russia 27902 T 1645 1645
9 Russia 27903 C T 1645 1644 Leu4Phe
10 Russia 27904 T 1645 1645
11 Russia 27905 T 1645 1645
12 Russia 27906 G T 1645 1644 Val5Phe
13 Russia 27907 T 1645 1645
14 Russia 27908 T C 1645 1644 Val5Val
15 Russia 27909 T 1645 1645
16 Russia 27910 T 1645 1645
17 Russia 27911 C T 1645 1643 Phe6Phe
18 Russia 27912 T 1645 1645
19 Russia 27913 T 1645 1645
20 Russia 27914 A 1645 1645
21 Russia 27915 G A 1645 1640 Gly8Arg
22 Russia 27916 G T 1645 1644 Gly8Val
23 Russia 27917 A 1645 1645
24 Russia 27918 A 1645 1645
25 Russia 27919 T 1645 1645
26 Russia 27920 C T 1645 1639 Ile9Ile
27 Russia 27921 A 1645 1645
28 Russia 27922 T C 1645 1641 Ile10Thr
29 Russia 27923 C T 1645 1639 Ile10Ile
30 Russia 27924 A 1645 1645
31 Russia 27925 C T 1645 1643 Thr11Ile
32 Russia 27926 A T 1645 1644 Thr11Thr
33 Russia 27927 A 1645 1645
34 Russia 27928 C A 1645 1643 Thr12Asn
35 Russia 27929 T 1645 1645
36 Russia 27930 G 1645 1645
37 Russia 27931 T 1645 1645
38 Russia 27932 A 1645 1645
39 Russia 27933 G 1645 1645
40 Russia 27934 C 1645 1645
41 Russia 27935 T 1645 1645
42 Russia 27936 G 1645 1645
43 Russia 27937 C 1645 1645
44 Russia 27938 A 1645 1645
45 Russia 27939 T 1645 1645
46 Russia 27940 T 1645 1645
47 Russia 27941 T 1645 1645
48 Russia 27942 C T 1645 1644 His17Tyr
49 Russia 27943 A 1645 1645
50 Russia 27944 C T 1645 1643 His17His
51 Russia 27945 C T 1645 1640 Gln18*
52 Russia 27946 A 1645 1645
53 Russia 27947 A 1645 1645
54 Russia 27948 G T 1645 1644 Glu19*
55 Russia 27949 A 1645 1645
56 Russia 27950 A C 1645 1644 Glu19Asp
57 Russia 27951 T 1645 1645
58 Russia 27952 G 1645 1645
59 Russia 27953 T C 1645 1644 Cys20Cys
60 Russia 27954 A 1645 1645
61 Russia 27955 G 1645 1645
62 Russia 27956 T 1645 1645
63 Russia 27957 T 1645 1645
64 Russia 27958 T 1645 1645
65 Russia 27959 A 1645 1645
66 Russia 27960 C 1645 1645
67 Russia 27961 A 1645 1645
68 Russia 27962 G 1645 1645
69 Russia 27963 T 1645 1645
70 Russia 27964 C T 1645 1644 Ser24Leu
71 Russia 27965 A 1645 1645
72 Russia 27966 T 1645 1645
73 Russia 27967 G 1645 1645
74 Russia 27968 T 1645 1645
75 Russia 27969 A 1645 1645
76 Russia 27970 C T 1645 1643 Thr26Ile
77 Russia 27971 T 1645 1645
78 Russia 27972 C 1645 1645
79 Russia 27973 A 1645 1645
80 Russia 27974 A 1645 1645
81 Russia 27975 C 1645 1645
82 Russia 27976 A T 1645 1644 His28Leu
83 Russia 27977 T C 1645 1644 His28His
84 Russia 27978 C 1645 1645
85 Russia 27979 A 1645 1645
86 Russia 27980 A 1645 1645
87 Russia 27981 C 1645 1645
88 Russia 27982 C 1645 1645
89 Russia 27983 A 1645 1645
90 Russia 27984 T 1645 1645
91 Russia 27985 A 1645 1645
92 Russia 27986 T 1645 1645
93 Russia 27987 G 1645 1645
94 Russia 27988 T 1645 1645
95 Russia 27989 A 1645 1645
96 Russia 27990 G 1645 1645
97 Russia 27991 T 1645 1645
98 Russia 27992 T 1645 1645
99 Russia 27993 G 1645 1645
100 Russia 27994 A 1645 1645
101 Russia 27995 T 1645 1645
102 Russia 27996 G A 1645 1644 Asp35Asn
103 Russia 27997 A 1645 1645
104 Russia 27998 C A,T 1645 1641 Asp35Glu-p.Asp35Asp
105 Russia 27999 C 1645 1645
106 Russia 28000 C G,T 1645 1642 Pro36Arg-p.Pro36Leu
107 Russia 28001 G T 1645 1640 Pro36Pro
108 Russia 28002 T 1645 1645
109 Russia 28003 G T 1645 1643 Cys37Phe
110 Russia 28004 T 1645 1645
111 Russia 28005 C T 1645 1643 Pro38Ser
112 Russia 28006 C T 1645 1644 Pro38Leu
113 Russia 28007 T 1645 1645
114 Russia 28008 A 1645 1645
115 Russia 28009 T C 1645 1643 Ile39Thr
116 Russia 28010 T 1645 1645
117 Russia 28011 C 1645 1645
118 Russia 28012 A 1645 1645
119 Russia 28013 C 1645 1645
120 Russia 28014 T 1644 1644
121 Russia 28015 T 1644 1644
122 Russia 28016 C 1644 1644
123 Russia 28017 T C 1644 1643 Tyr42His
124 Russia 28018 A 1644 1644
125 Russia 28019 T C 1644 1640 Tyr42Tyr
126 Russia 28020 T 1644 1644
127 Russia 28021 C 1644 1644
128 Russia 28022 T 1644 1644
129 Russia 28023 A 1644 1644
130 Russia 28024 A 1644 1644
131 Russia 28025 A 1644 1644
132 Russia 28026 T 1644 1644
133 Russia 28027 G T 1644 1643 Trp45Leu
134 Russia 28028 G T 1644 1642 Trp45Cys
135 Russia 28029 T 1644 1644
136 Russia 28030 A 1644 1644
137 Russia 28031 T 1644 1644
138 Russia 28032 A 1644 1644
139 Russia 28033 T 1644 1644
140 Russia 28034 T 1644 1644
141 Russia 28035 A 1644 1644
142 Russia 28036 G T 1644 1643 Arg48Ile
143 Russia 28037 A 1644 1644
144 Russia 28038 G T 1644 1643 Val49Leu
145 Russia 28039 T 1644 1644
146 Russia 28040 A 1644 1644
147 Russia 28041 G 1644 1644
148 Russia 28042 G 1644 1644
149 Russia 28043 A G 1644 1640 Gly50Gly
150 Russia 28044 G T 1644 1643 Ala51Ser
151 Russia 28045 C 1644 1643
152 Russia 28046 T 1644 1644
153 Russia 28047 A 1644 1644
154 Russia 28048 G A,T 1644 1640 Arg52Lys-p.Arg52Ile
155 Russia 28049 A 1644 1644
156 Russia 28050 A 1644 1644
157 Russia 28051 A 1644 1644
158 Russia 28052 A 1644 1644
159 Russia 28053 T 1644 1644
160 Russia 28054 C T 1644 1643 Ser54Leu
161 Russia 28055 A 1644 1644
162 Russia 28056 G 1644 1644
163 Russia 28057 C T 1644 1638 Ala55Val
164 Russia 28058 A 1644 1644
165 Russia 28059 C 1644 1644
166 Russia 28060 C 1644 1644
167 Russia 28061 T 1644 1644
168 Russia 28062 T 1644 1644
169 Russia 28063 T 1644 1644
170 Russia 28064 A 1644 1644
171 Russia 28065 A 1644 1644
172 Russia 28066 T 1644 1644
173 Russia 28067 T 1644 1644
174 Russia 28068 G T 1644 1638 Glu59*
175 Russia 28069 A 1644 1644
176 Russia 28070 A 1644 1644
177 Russia 28071 T 1644 1644
178 Russia 28072 T 1644 1644
179 Russia 28073 G 1645 1645
180 Russia 28074 T 1645 1645
181 Russia 28075 G 1645 1645
182 Russia 28076 C T 1645 1642 Cys61Cys
183 Russia 28077 G T 1645 1598 Val62Leu
184 Russia 28078 T 1645 1645
185 Russia 28079 G T 1645 1640 Val62Val
186 Russia 28080 G 1645 1645
187 Russia 28081 A G 1645 1644 Asp63Gly
188 Russia 28082 T 1645 1645
189 Russia 28083 G T 1645 1644 Glu64*
190 Russia 28084 A T 1645 1644 Glu64Val
191 Russia 28085 G 1645 1645
192 Russia 28086 G T 1645 1644 Ala65Ser
193 Russia 28087 C T 1645 1637 Ala65Val
194 Russia 28088 T 1645 1645
195 Russia 28089 G T,A 1645 1643 Gly66Cys-p.Gly66Ser
196 Russia 28090 G 1645 1645
197 Russia 28091 T 1645 1645
198 Russia 28092 T C 1645 1643 Ser67Pro
199 Russia 28093 C T 1645 1640 Ser67Phe
200 Russia 28094 T 1645 1645
201 Russia 28095 A 1645 1645
202 Russia 28096 A 1645 1645
203 Russia 28097 A 1645 1645
204 Russia 28098 T 1645 1645
205 Russia 28099 C 1645 1645
206 Russia 28100 A 1645 1645
207 Russia 28101 C 1645 1645
208 Russia 28102 C T 1645 1644 Pro70Leu
209 Russia 28103 C 1645 1645
210 Russia 28104 A 1645 1645
211 Russia 28105 T 1645 1645
212 Russia 28106 T 1645 1645
213 Russia 28107 C 1645 1645
214 Russia 28108 A 1645 1645
215 Russia 28109 G T 1645 1643 Gln72His
216 Russia 28110 T 1645 1645
217 Russia 28111 A 1645 1645
218 Russia 28112 C 1645 1645
219 Russia 28113 A 1645 1645
220 Russia 28114 T 1645 1645
221 Russia 28115 C 1645 1645
222 Russia 28116 G 1645 1645
223 Russia 28117 A 1645 1645
224 Russia 28118 T 1645 1645
225 Russia 28119 A 1645 1645
226 Russia 28120 T 1645 1645
227 Russia 28121 C 1645 1645
228 Russia 28122 G T,A 1645 1642 Gly77Cys-p.Gly77Ser
229 Russia 28123 G 1645 1645
230 Russia 28124 T 1645 1645
231 Russia 28125 A 1645 1645
232 Russia 28126 A 1645 1645
233 Russia 28127 T 1645 1645
234 Russia 28128 T 1645 1645
235 Russia 28129 A 1645 1645
236 Russia 28130 T 1645 1645
237 Russia 28131 A 1645 1645
238 Russia 28132 C 1645 1645
239 Russia 28133 A 1645 1645
240 Russia 28134 G A 1646 1645 Val81Ile
241 Russia 28135 T 1646 1646
242 Russia 28136 T 1646 1646
243 Russia 28137 T 1646 1646
244 Russia 28138 C 1646 1646
245 Russia 28139 C 1646 1646
246 Russia 28140 T 1646 1646
247 Russia 28141 G 1646 1646
248 Russia 28142 T 1646 1646
249 Russia 28143 T 1646 1646
250 Russia 28144 T C 1646 1644 Leu84Ser
251 Russia 28145 A 1646 1646
252 Russia 28146 C 1646 1646
253 Russia 28147 C 1646 1646
254 Russia 28148 T 1646 1646
255 Russia 28149 T 1646 1646
256 Russia 28150 T 1646 1646
257 Russia 28151 T 1646 1646
258 Russia 28152 A 1646 1646
259 Russia 28153 C T 1646 1632 Thr87Ile
260 Russia 28154 A 1646 1646
261 Russia 28155 A 1646 1646
262 Russia 28156 T 1646 1646
263 Russia 28157 T 1646 1646
264 Russia 28158 A 1646 1646
265 Russia 28159 A 1646 1646
266 Russia 28160 T 1646 1646
267 Russia 28161 T 1646 1646
268 Russia 28162 G 1646 1646
269 Russia 28163 C 1646 1646
270 Russia 28164 C A 1647 1646 Gln91Lys
271 Russia 28165 A 1647 1647
272 Russia 28166 G A 1647 1642 Gln91Gln
273 Russia 28167 G 1647 1647
274 Russia 28168 A 1647 1647
275 Russia 28169 A 1647 1647
276 Russia 28170 C 1647 1647
277 Russia 28171 C T 1647 1645 Pro93Leu
278 Russia 28172 T 1647 1647
279 Russia 28173 A 1647 1647
280 Russia 28174 A 1647 1647
281 Russia 28175 A 1647 1647
282 Russia 28176 T 1647 1647
283 Russia 28177 T G 1647 1646 Leu95Trp
284 Russia 28178 G T 1647 1640 Leu95Phe
285 Russia 28179 G 1647 1647
286 Russia 28180 G 1647 1647
287 Russia 28181 T 1647 1647
288 Russia 28182 A G 1647 1646 Ser97Gly
289 Russia 28183 G 1647 1647
290 Russia 28184 T 1647 1647
291 Russia 28185 C 1647 1647
292 Russia 28186 T 1647 1647
293 Russia 28187 T 1647 1647
294 Russia 28188 G 1647 1647
295 Russia 28189 T 1647 1647
296 Russia 28190 A 1647 1647
297 Russia 28191 G 1647 1647
298 Russia 28192 T 1647 1647
299 Russia 28193 G 1647 1647
300 Russia 28194 C 1647 1647
301 Russia 28195 G T,A 1647 1641 Arg101Leu-p.Arg101His
302 Russia 28196 T C 1647 1645 Arg101Arg
303 Russia 28197 T 1647 1647
304 Russia 28198 G 1647 1647
305 Russia 28199 T C 1647 1645 Cys102Cys
306 Russia 28200 T 1647 1647
307 Russia 28201 C 1647 1647
308 Russia 28202 G T 1647 1646 Ser103Ser
309 Russia 28203 T 1647 1647
310 Russia 28204 T 1647 1647
311 Russia 28205 C 1647 1647
312 Russia 28206 T 1647 1647
313 Russia 28207 A 1647 1647
314 Russia 28208 T 1647 1647
315 Russia 28209 G 1647 1647
316 Russia 28210 A 1647 1647
317 Russia 28211 A 1647 1647
318 Russia 28212 G T 1647 1646 Asp107Tyr
319 Russia 28213 A 1647 1647
320 Russia 28214 C 1647 1647
321 Russia 28215 T 1647 1647
322 Russia 28216 T C 1647 1645 Phe108Ser
323 Russia 28217 T 1647 1647
324 Russia 28218 T 1647 1647
325 Russia 28219 T 1647 1647
326 Russia 28220 A G 1647 1645 Leu109Leu
327 Russia 28221 G T 1647 1643 Glu110*
328 Russia 28222 A 1647 1647
329 Russia 28223 G 1647 1647
330 Russia 28224 T 1647 1647
331 Russia 28225 A 1647 1647
332 Russia 28226 T 1647 1647
333 Russia 28227 C 1647 1647
334 Russia 28228 A 1647 1647
335 Russia 28229 T 1647 1647
336 Russia 28230 G 1647 1647
337 Russia 28231 A 1647 1647
338 Russia 28232 C 1647 1647
339 Russia 28233 G T 1647 1636 Val114Phe
340 Russia 28234 T 1647 1647
341 Russia 28235 T 1647 1647
342 Russia 28236 C 1647 1647
343 Russia 28237 G T 1647 1645 Arg115Leu
344 Russia 28238 T 1647 1647
345 Russia 28239 G 1647 1647
346 Russia 28240 T 1647 1647
347 Russia 28241 T 1647 1647
348 Russia 28242 G T 1647 1646 Val117Phe
349 Russia 28243 T 1647 1647
350 Russia 28244 T 1647 1647
351 Russia 28245 T G 1647 1645 Leu118Val
352 Russia 28246 T 1647 1647
353 Russia 28247 A 1647 1647
354 Russia 28248 G 1647 1647
355 Russia 28249 A 1647 1647
356 Russia 28250 T C 1647 1646 Asp119Asp
357 Russia 28251 T 1641 1641
358 Russia 28252 T 1641 1641
359 Russia 28253 C T 1641 1584 Phe120Phe
360 Russia 28254 A C 1641 1637 Ile121Leu
361 Russia 28255 T 1641 1641
362 Russia 28256 C 1641 1641
363 Russia 28257 T 1641 1641
364 Russia 28258 A 1641 1641
365 Russia 28259 A 1641 1641