National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 27894 A 16 16
1 Qatar 27895 T 16 16
2 Qatar 27896 G 16 16
3 Qatar 27897 A 16 16
4 Qatar 27898 A 16 16
5 Qatar 27899 A 16 16
6 Qatar 27900 T 16 16
7 Qatar 27901 T 16 16
8 Qatar 27902 T 16 16
9 Qatar 27903 C 16 16
10 Qatar 27904 T 16 16
11 Qatar 27905 T 16 16
12 Qatar 27906 G 16 16
13 Qatar 27907 T 16 16
14 Qatar 27908 T 16 16
15 Qatar 27909 T 16 16
16 Qatar 27910 T 16 16
17 Qatar 27911 C 16 16
18 Qatar 27912 T 16 16
19 Qatar 27913 T 16 16
20 Qatar 27914 A 16 16
21 Qatar 27915 G 16 16
22 Qatar 27916 G 16 16
23 Qatar 27917 A 16 16
24 Qatar 27918 A 16 16
25 Qatar 27919 T 16 16
26 Qatar 27920 C 16 16
27 Qatar 27921 A 16 16
28 Qatar 27922 T 16 16
29 Qatar 27923 C 16 16
30 Qatar 27924 A 16 16
31 Qatar 27925 C 16 16
32 Qatar 27926 A 16 16
33 Qatar 27927 A 16 16
34 Qatar 27928 C 16 16
35 Qatar 27929 T 16 16
36 Qatar 27930 G 16 16
37 Qatar 27931 T 16 16
38 Qatar 27932 A 16 16
39 Qatar 27933 G 16 16
40 Qatar 27934 C 16 16
41 Qatar 27935 T 16 16
42 Qatar 27936 G 16 16
43 Qatar 27937 C 16 16
44 Qatar 27938 A 16 16
45 Qatar 27939 T 16 16
46 Qatar 27940 T 16 16
47 Qatar 27941 T 16 16
48 Qatar 27942 C 16 16
49 Qatar 27943 A 16 16
50 Qatar 27944 C 16 16
51 Qatar 27945 C 16 16
52 Qatar 27946 A 16 16
53 Qatar 27947 A 16 16
54 Qatar 27948 G 16 16
55 Qatar 27949 A 16 16
56 Qatar 27950 A 16 16
57 Qatar 27951 T 16 16
58 Qatar 27952 G 16 16
59 Qatar 27953 T 16 16
60 Qatar 27954 A 16 16
61 Qatar 27955 G 16 16
62 Qatar 27956 T 16 16
63 Qatar 27957 T 16 16
64 Qatar 27958 T 16 16
65 Qatar 27959 A 16 16
66 Qatar 27960 C 16 16
67 Qatar 27961 A 16 16
68 Qatar 27962 G 16 16
69 Qatar 27963 T 16 16
70 Qatar 27964 C 16 16
71 Qatar 27965 A 16 16
72 Qatar 27966 T 16 16
73 Qatar 27967 G 16 16
74 Qatar 27968 T 16 16
75 Qatar 27969 A 16 16
76 Qatar 27970 C 16 16
77 Qatar 27971 T 16 16
78 Qatar 27972 C 16 16
79 Qatar 27973 A 16 16
80 Qatar 27974 A 16 16
81 Qatar 27975 C 16 16
82 Qatar 27976 A 16 16
83 Qatar 27977 T 16 16
84 Qatar 27978 C 16 16
85 Qatar 27979 A 16 16
86 Qatar 27980 A 16 16
87 Qatar 27981 C 16 16
88 Qatar 27982 C 16 16
89 Qatar 27983 A 16 16
90 Qatar 27984 T 16 16
91 Qatar 27985 A 16 16
92 Qatar 27986 T 16 16
93 Qatar 27987 G 16 16
94 Qatar 27988 T 16 16
95 Qatar 27989 A 16 16
96 Qatar 27990 G 16 16
97 Qatar 27991 T 16 16
98 Qatar 27992 T 16 16
99 Qatar 27993 G 16 16
100 Qatar 27994 A 16 16
101 Qatar 27995 T 16 16
102 Qatar 27996 G 16 16
103 Qatar 27997 A 16 16
104 Qatar 27998 C 16 16
105 Qatar 27999 C 16 16
106 Qatar 28000 C 16 16
107 Qatar 28001 G 16 16
108 Qatar 28002 T 16 16
109 Qatar 28003 G 16 16
110 Qatar 28004 T 16 16
111 Qatar 28005 C 16 16
112 Qatar 28006 C 16 16
113 Qatar 28007 T 16 16
114 Qatar 28008 A 16 16
115 Qatar 28009 T 16 16
116 Qatar 28010 T 16 16
117 Qatar 28011 C 16 16
118 Qatar 28012 A 16 16
119 Qatar 28013 C 16 16
120 Qatar 28014 T 16 16
121 Qatar 28015 T 16 16
122 Qatar 28016 C 16 16
123 Qatar 28017 T 16 16
124 Qatar 28018 A 16 16
125 Qatar 28019 T 16 16
126 Qatar 28020 T 16 16
127 Qatar 28021 C 16 16
128 Qatar 28022 T 16 16
129 Qatar 28023 A 16 16
130 Qatar 28024 A 16 16
131 Qatar 28025 A 16 16
132 Qatar 28026 T 16 16
133 Qatar 28027 G 16 16
134 Qatar 28028 G 16 16
135 Qatar 28029 T 16 16
136 Qatar 28030 A 16 16
137 Qatar 28031 T 16 16
138 Qatar 28032 A 16 16
139 Qatar 28033 T 16 16
140 Qatar 28034 T 16 16
141 Qatar 28035 A 16 16
142 Qatar 28036 G 16 16
143 Qatar 28037 A 16 16
144 Qatar 28038 G 16 16
145 Qatar 28039 T 16 16
146 Qatar 28040 A 16 16
147 Qatar 28041 G 16 16
148 Qatar 28042 G 16 16
149 Qatar 28043 A 16 16
150 Qatar 28044 G 16 16
151 Qatar 28045 C 16 16
152 Qatar 28046 T 16 16
153 Qatar 28047 A 16 16
154 Qatar 28048 G 16 16
155 Qatar 28049 A 16 16
156 Qatar 28050 A 16 16
157 Qatar 28051 A 16 16
158 Qatar 28052 A 16 16
159 Qatar 28053 T 16 16
160 Qatar 28054 C 16 16
161 Qatar 28055 A 16 16
162 Qatar 28056 G 16 16
163 Qatar 28057 C 16 16
164 Qatar 28058 A 16 16
165 Qatar 28059 C 16 16
166 Qatar 28060 C 16 16
167 Qatar 28061 T 16 16
168 Qatar 28062 T 16 16
169 Qatar 28063 T 16 16
170 Qatar 28064 A 16 16
171 Qatar 28065 A 16 16
172 Qatar 28066 T 16 16
173 Qatar 28067 T 16 16
174 Qatar 28068 G 16 16
175 Qatar 28069 A 16 16
176 Qatar 28070 A 16 16
177 Qatar 28071 T 16 16
178 Qatar 28072 T 16 16
179 Qatar 28073 G 16 16
180 Qatar 28074 T 16 16
181 Qatar 28075 G 16 16
182 Qatar 28076 C 16 16
183 Qatar 28077 G 16 16
184 Qatar 28078 T 16 16
185 Qatar 28079 G 16 16
186 Qatar 28080 G 16 16
187 Qatar 28081 A 16 16
188 Qatar 28082 T 16 16
189 Qatar 28083 G 16 16
190 Qatar 28084 A 16 16
191 Qatar 28085 G 16 16
192 Qatar 28086 G 16 16
193 Qatar 28087 C 16 16
194 Qatar 28088 T 16 16
195 Qatar 28089 G 16 16
196 Qatar 28090 G 16 16
197 Qatar 28091 T 16 16
198 Qatar 28092 T 16 16
199 Qatar 28093 C 16 16
200 Qatar 28094 T 16 16
201 Qatar 28095 A 16 16
202 Qatar 28096 A 16 16
203 Qatar 28097 A 16 16
204 Qatar 28098 T 16 16
205 Qatar 28099 C 16 16
206 Qatar 28100 A 16 16
207 Qatar 28101 C 16 16
208 Qatar 28102 C 16 16
209 Qatar 28103 C 16 16
210 Qatar 28104 A 16 16
211 Qatar 28105 T 16 16
212 Qatar 28106 T 16 16
213 Qatar 28107 C 16 16
214 Qatar 28108 A 16 16
215 Qatar 28109 G 16 16
216 Qatar 28110 T 16 16
217 Qatar 28111 A 16 16
218 Qatar 28112 C 16 16
219 Qatar 28113 A 16 16
220 Qatar 28114 T 16 16
221 Qatar 28115 C 16 16
222 Qatar 28116 G 16 16
223 Qatar 28117 A 16 16
224 Qatar 28118 T 16 16
225 Qatar 28119 A 16 16
226 Qatar 28120 T 16 16
227 Qatar 28121 C 16 16
228 Qatar 28122 G 16 16
229 Qatar 28123 G 16 16
230 Qatar 28124 T 16 16
231 Qatar 28125 A 16 16
232 Qatar 28126 A 16 16
233 Qatar 28127 T 16 16
234 Qatar 28128 T 16 16
235 Qatar 28129 A 16 16
236 Qatar 28130 T 16 16
237 Qatar 28131 A 16 16
238 Qatar 28132 C 16 16
239 Qatar 28133 A 16 16
240 Qatar 28134 G 16 16
241 Qatar 28135 T 16 16
242 Qatar 28136 T 16 16
243 Qatar 28137 T 16 16
244 Qatar 28138 C 16 16
245 Qatar 28139 C 16 16
246 Qatar 28140 T 16 16
247 Qatar 28141 G 16 15
248 Qatar 28142 T 16 16
249 Qatar 28143 T 16 16
250 Qatar 28144 T 16 16
251 Qatar 28145 A 16 16
252 Qatar 28146 C 16 16
253 Qatar 28147 C 16 16
254 Qatar 28148 T 16 16
255 Qatar 28149 T 16 16
256 Qatar 28150 T 16 16
257 Qatar 28151 T 16 16
258 Qatar 28152 A 16 16
259 Qatar 28153 C 16 16
260 Qatar 28154 A 16 16
261 Qatar 28155 A 16 16
262 Qatar 28156 T 16 16
263 Qatar 28157 T 16 16
264 Qatar 28158 A 16 16
265 Qatar 28159 A 16 16
266 Qatar 28160 T 16 16
267 Qatar 28161 T 16 16
268 Qatar 28162 G 16 16
269 Qatar 28163 C 16 16
270 Qatar 28164 C 16 16
271 Qatar 28165 A 16 16
272 Qatar 28166 G 16 16
273 Qatar 28167 G 16 16
274 Qatar 28168 A 16 16
275 Qatar 28169 A 16 16
276 Qatar 28170 C 16 16
277 Qatar 28171 C 16 16
278 Qatar 28172 T 16 16
279 Qatar 28173 A 16 16
280 Qatar 28174 A 16 16
281 Qatar 28175 A 16 16
282 Qatar 28176 T 16 16
283 Qatar 28177 T 16 16
284 Qatar 28178 G 16 16
285 Qatar 28179 G 16 16
286 Qatar 28180 G 16 16
287 Qatar 28181 T 16 16
288 Qatar 28182 A 16 16
289 Qatar 28183 G 16 16
290 Qatar 28184 T 16 16
291 Qatar 28185 C 16 16
292 Qatar 28186 T 16 16
293 Qatar 28187 T 16 16
294 Qatar 28188 G 16 16
295 Qatar 28189 T 16 16
296 Qatar 28190 A 16 16
297 Qatar 28191 G 16 16
298 Qatar 28192 T 16 16
299 Qatar 28193 G 16 16
300 Qatar 28194 C 16 16
301 Qatar 28195 G 16 16
302 Qatar 28196 T 16 16
303 Qatar 28197 T 16 16
304 Qatar 28198 G 16 16
305 Qatar 28199 T 16 16
306 Qatar 28200 T 16 16
307 Qatar 28201 C 16 16
308 Qatar 28202 G 16 16
309 Qatar 28203 T 16 16
310 Qatar 28204 T 16 16
311 Qatar 28205 C 16 16
312 Qatar 28206 T 16 16
313 Qatar 28207 A 16 16
314 Qatar 28208 T 16 16
315 Qatar 28209 G 16 16
316 Qatar 28210 A 16 16
317 Qatar 28211 A 16 16
318 Qatar 28212 G 16 16
319 Qatar 28213 A 16 16
320 Qatar 28214 C 16 16
321 Qatar 28215 T 16 16
322 Qatar 28216 T 16 16
323 Qatar 28217 T 16 16
324 Qatar 28218 T 16 16
325 Qatar 28219 T 16 16
326 Qatar 28220 A 16 16
327 Qatar 28221 G 16 16
328 Qatar 28222 A 16 16
329 Qatar 28223 G 16 16
330 Qatar 28224 T 16 16
331 Qatar 28225 A 16 16
332 Qatar 28226 T 16 16
333 Qatar 28227 C 16 16
334 Qatar 28228 A 16 16
335 Qatar 28229 T 16 16
336 Qatar 28230 G 16 16
337 Qatar 28231 A 16 16
338 Qatar 28232 C 16 16
339 Qatar 28233 G 16 16
340 Qatar 28234 T 16 16
341 Qatar 28235 T 16 16
342 Qatar 28236 C 16 16
343 Qatar 28237 G 16 16
344 Qatar 28238 T 16 16
345 Qatar 28239 G 16 16
346 Qatar 28240 T 16 16
347 Qatar 28241 T 16 16
348 Qatar 28242 G 16 16
349 Qatar 28243 T 16 16
350 Qatar 28244 T 16 16
351 Qatar 28245 T 16 16
352 Qatar 28246 T 16 16
353 Qatar 28247 A 16 16
354 Qatar 28248 G 16 16
355 Qatar 28249 A 16 16
356 Qatar 28250 T 16 16
357 Qatar 28251 T 16 16
358 Qatar 28252 T 16 16
359 Qatar 28253 C 16 16
360 Qatar 28254 A 16 16
361 Qatar 28255 T 16 16
362 Qatar 28256 C 16 16
363 Qatar 28257 T 16 16
364 Qatar 28258 A 16 16
365 Qatar 28259 A 16 16