National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1   2    
C     21                                        
D     22     1                                  
E     18                 2                      
F     24         1                              
G     15                                        
H     12             1             1           1
I     30               1                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                         1              
Q 1   18                                        
R     12                   1                    
S     27         1         1           1        
T     15                                        
V     36                   1               1    
W     3                   1                    
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 27894 A 1652 1652
1 Portugal 27895 T 1652 1652
2 Portugal 27896 G 1652 1652
3 Portugal 27897 A 1652 1652
4 Portugal 27898 A 1652 1652
5 Portugal 27899 A 1652 1652
6 Portugal 27900 T 1652 1652
7 Portugal 27901 T 1652 1652
8 Portugal 27902 T 1652 1652
9 Portugal 27903 C 1652 1652
10 Portugal 27904 T 1652 1652
11 Portugal 27905 T 1652 1652
12 Portugal 27906 G 1652 1652
13 Portugal 27907 T 1652 1652
14 Portugal 27908 T 1652 1652
15 Portugal 27909 T 1652 1652
16 Portugal 27910 T 1652 1652
17 Portugal 27911 C 1652 1652
18 Portugal 27912 T 1652 1652
19 Portugal 27913 T 1652 1652
20 Portugal 27914 A 1652 1652
21 Portugal 27915 G 1652 1652
22 Portugal 27916 G 1652 1652
23 Portugal 27917 A 1652 1652
24 Portugal 27918 A 1652 1652
25 Portugal 27919 T 1652 1652
26 Portugal 27920 C T 1652 1651 Ile9Ile
27 Portugal 27921 A 1652 1652
28 Portugal 27922 T 1652 1652
29 Portugal 27923 C 1652 1652
30 Portugal 27924 A 1652 1652
31 Portugal 27925 C 1652 1652
32 Portugal 27926 A 1652 1652
33 Portugal 27927 A 1652 1652
34 Portugal 27928 C 1652 1652
35 Portugal 27929 T 1652 1652
36 Portugal 27930 G 1652 1652
37 Portugal 27931 T 1652 1652
38 Portugal 27932 A 1652 1652
39 Portugal 27933 G 1652 1652
40 Portugal 27934 C 1652 1652
41 Portugal 27935 T 1652 1652
42 Portugal 27936 G 1652 1652
43 Portugal 27937 C 1652 1652
44 Portugal 27938 A 1652 1652
45 Portugal 27939 T 1652 1652
46 Portugal 27940 T 1652 1652
47 Portugal 27941 T 1652 1652
48 Portugal 27942 C T 1652 1651 His17Tyr
49 Portugal 27943 A 1652 1652
50 Portugal 27944 C T 1652 1650 His17His
51 Portugal 27945 C T 1652 1645 Gln18*
52 Portugal 27946 A 1652 1652
53 Portugal 27947 A 1652 1652
54 Portugal 27948 G 1652 1652
55 Portugal 27949 A 1652 1652
56 Portugal 27950 A 1652 1652
57 Portugal 27951 T 1652 1652
58 Portugal 27952 G 1652 1652
59 Portugal 27953 T 1652 1652
60 Portugal 27954 A 1652 1652
61 Portugal 27955 G 1652 1652
62 Portugal 27956 T 1652 1652
63 Portugal 27957 T 1652 1652
64 Portugal 27958 T 1652 1652
65 Portugal 27959 A 1652 1652
66 Portugal 27960 C 1652 1652
67 Portugal 27961 A 1652 1652
68 Portugal 27962 G 1652 1652
69 Portugal 27963 T 1652 1652
70 Portugal 27964 C 1652 1652
71 Portugal 27965 A 1652 1652
72 Portugal 27966 T 1652 1652
73 Portugal 27967 G 1652 1652
74 Portugal 27968 T 1652 1652
75 Portugal 27969 A 1652 1652
76 Portugal 27970 C 1652 1652
77 Portugal 27971 T 1652 1652
78 Portugal 27972 C 1652 1652
79 Portugal 27973 A 1652 1652
80 Portugal 27974 A 1652 1652
81 Portugal 27975 C 1652 1652
82 Portugal 27976 A 1652 1652
83 Portugal 27977 T 1652 1652
84 Portugal 27978 C 1652 1652
85 Portugal 27979 A 1652 1652
86 Portugal 27980 A 1652 1652
87 Portugal 27981 C 1652 1652
88 Portugal 27982 C 1652 1652
89 Portugal 27983 A 1652 1652
90 Portugal 27984 T 1652 1652
91 Portugal 27985 A 1652 1652
92 Portugal 27986 T 1652 1652
93 Portugal 27987 G 1652 1652
94 Portugal 27988 T 1652 1652
95 Portugal 27989 A 1652 1652
96 Portugal 27990 G 1652 1652
97 Portugal 27991 T 1652 1652
98 Portugal 27992 T 1652 1652
99 Portugal 27993 G 1652 1652
100 Portugal 27994 A 1652 1652
101 Portugal 27995 T C 1652 1651 Asp34Asp
102 Portugal 27996 G 1652 1652
103 Portugal 27997 A 1652 1652
104 Portugal 27998 C 1652 1652
105 Portugal 27999 C 1652 1652
106 Portugal 28000 C 1652 1652
107 Portugal 28001 G T 1652 1651 Pro36Pro
108 Portugal 28002 T 1652 1652
109 Portugal 28003 G 1652 1652
110 Portugal 28004 T 1652 1652
111 Portugal 28005 C 1652 1652
112 Portugal 28006 C 1652 1652
113 Portugal 28007 T 1652 1652
114 Portugal 28008 A 1654 1654
115 Portugal 28009 T 1654 1654
116 Portugal 28010 T 1654 1654
117 Portugal 28011 C 1654 1654
118 Portugal 28012 A 1654 1654
119 Portugal 28013 C A 1654 1652 His40Gln
120 Portugal 28014 T 1654 1654
121 Portugal 28015 T 1654 1654
122 Portugal 28016 C 1654 1654
123 Portugal 28017 T 1654 1654
124 Portugal 28018 A 1654 1654
125 Portugal 28019 T 1654 1654
126 Portugal 28020 T 1654 1654
127 Portugal 28021 C 1654 1654
128 Portugal 28022 T 1654 1654
129 Portugal 28023 A 1654 1654
130 Portugal 28024 A 1654 1654
131 Portugal 28025 A 1654 1654
132 Portugal 28026 T 1654 1654
133 Portugal 28027 G T 1654 1653 Trp45Leu
134 Portugal 28028 G 1654 1654
135 Portugal 28029 T 1654 1654
136 Portugal 28030 A 1654 1654
137 Portugal 28031 T 1654 1654
138 Portugal 28032 A 1654 1654
139 Portugal 28033 T 1654 1654
140 Portugal 28034 T 1654 1654
141 Portugal 28035 A 1654 1654
142 Portugal 28036 G 1654 1654
143 Portugal 28037 A 1654 1654
144 Portugal 28038 G 1654 1654
145 Portugal 28039 T 1654 1654
146 Portugal 28040 A 1654 1654
147 Portugal 28041 G 1654 1654
148 Portugal 28042 G 1654 1654
149 Portugal 28043 A 1654 1654
150 Portugal 28044 G 1654 1654
151 Portugal 28045 C T 1654 1653 Ala51Val
152 Portugal 28046 T 1654 1654
153 Portugal 28047 A 1654 1654
154 Portugal 28048 G 1654 1654
155 Portugal 28049 A 1654 1654
156 Portugal 28050 A 1654 1654
157 Portugal 28051 A 1654 1654
158 Portugal 28052 A 1654 1654
159 Portugal 28053 T 1654 1654
160 Portugal 28054 C 1654 1654
161 Portugal 28055 A 1654 1654
162 Portugal 28056 G 1654 1654
163 Portugal 28057 C 1654 1654
164 Portugal 28058 A 1654 1654
165 Portugal 28059 C 1654 1654
166 Portugal 28060 C 1654 1654
167 Portugal 28061 T 1654 1654
168 Portugal 28062 T 1654 1654
169 Portugal 28063 T 1654 1654
170 Portugal 28064 A 1654 1654
171 Portugal 28065 A 1654 1654
172 Portugal 28066 T 1654 1654
173 Portugal 28067 T 1654 1654
174 Portugal 28068 G 1654 1654
175 Portugal 28069 A 1654 1654
176 Portugal 28070 A 1654 1654
177 Portugal 28071 T 1654 1654
178 Portugal 28072 T 1654 1654
179 Portugal 28073 G 1654 1654
180 Portugal 28074 T 1654 1653
181 Portugal 28075 G 1654 1653
182 Portugal 28076 C 1654 1653
183 Portugal 28077 G T 1654 1652 Val62Leu
184 Portugal 28078 T 1654 1652
185 Portugal 28079 G T 1654 1650 Val62Val
186 Portugal 28080 G 1654 1653
187 Portugal 28081 A 1654 1653
188 Portugal 28082 T 1654 1653
189 Portugal 28083 G 1654 1653
190 Portugal 28084 A 1654 1652
191 Portugal 28085 G 1654 1652
192 Portugal 28086 G T 1654 1651 Ala65Ser
193 Portugal 28087 C T 1654 1652 Ala65Val
194 Portugal 28088 T 1654 1652
195 Portugal 28089 G 1654 1654
196 Portugal 28090 G 1654 1654
197 Portugal 28091 T 1654 1654
198 Portugal 28092 T 1654 1654
199 Portugal 28093 C T 1654 1653 Ser67Phe
200 Portugal 28094 T 1654 1654
201 Portugal 28095 A 1654 1654
202 Portugal 28096 A 1654 1654
203 Portugal 28097 A 1654 1654
204 Portugal 28098 T 1654 1654
205 Portugal 28099 C T 1654 1653 Ser69Leu
206 Portugal 28100 A 1654 1654
207 Portugal 28101 C 1654 1654
208 Portugal 28102 C 1654 1654
209 Portugal 28103 C 1654 1654
210 Portugal 28104 A 1654 1654
211 Portugal 28105 T 1654 1654
212 Portugal 28106 T 1654 1654
213 Portugal 28107 C 1654 1654
214 Portugal 28108 A 1654 1654
215 Portugal 28109 G 1654 1654
216 Portugal 28110 T 1654 1654
217 Portugal 28111 A 1654 1654
218 Portugal 28112 C 1654 1654
219 Portugal 28113 A 1654 1654
220 Portugal 28114 T 1654 1654
221 Portugal 28115 C 1654 1654
222 Portugal 28116 G 1654 1654
223 Portugal 28117 A 1654 1654
224 Portugal 28118 T 1654 1654
225 Portugal 28119 A 1654 1654
226 Portugal 28120 T 1654 1654
227 Portugal 28121 C 1654 1654
228 Portugal 28122 G 1654 1654
229 Portugal 28123 G 1654 1654
230 Portugal 28124 T 1654 1654
231 Portugal 28125 A 1654 1654
232 Portugal 28126 A 1654 1654
233 Portugal 28127 T 1654 1654
234 Portugal 28128 T 1654 1654
235 Portugal 28129 A 1654 1654
236 Portugal 28130 T 1654 1654
237 Portugal 28131 A 1654 1654
238 Portugal 28132 C 1654 1654
239 Portugal 28133 A 1654 1654
240 Portugal 28134 G 1654 1654
241 Portugal 28135 T 1654 1654
242 Portugal 28136 T 1654 1654
243 Portugal 28137 T 1654 1654
244 Portugal 28138 C 1654 1654
245 Portugal 28139 C T 1654 1652 Ser82Ser
246 Portugal 28140 T 1654 1654
247 Portugal 28141 G 1654 1654
248 Portugal 28142 T 1654 1654
249 Portugal 28143 T 1654 1654
250 Portugal 28144 T C 1654 1611 Leu84Ser
251 Portugal 28145 A 1654 1654
252 Portugal 28146 C 1654 1654
253 Portugal 28147 C 1654 1654
254 Portugal 28148 T 1654 1654
255 Portugal 28149 T 1654 1654
256 Portugal 28150 T 1654 1654
257 Portugal 28151 T 1654 1654
258 Portugal 28152 A 1654 1654
259 Portugal 28153 C 1654 1654
260 Portugal 28154 A 1654 1654
261 Portugal 28155 A 1654 1654
262 Portugal 28156 T 1654 1654
263 Portugal 28157 T 1654 1654
264 Portugal 28158 A 1654 1654
265 Portugal 28159 A 1654 1654
266 Portugal 28160 T 1654 1654
267 Portugal 28161 T 1654 1654
268 Portugal 28162 G 1654 1654
269 Portugal 28163 C 1654 1654
270 Portugal 28164 C 1654 1654
271 Portugal 28165 A 1654 1654
272 Portugal 28166 G 1654 1654
273 Portugal 28167 G A 1654 1653 Glu92Lys
274 Portugal 28168 A 1654 1654
275 Portugal 28169 A 1654 1654
276 Portugal 28170 C 1654 1654
277 Portugal 28171 C 1654 1654
278 Portugal 28172 T 1654 1654
279 Portugal 28173 A 1654 1654
280 Portugal 28174 A 1654 1654
281 Portugal 28175 A 1654 1654
282 Portugal 28176 T 1654 1654
283 Portugal 28177 T 1654 1654
284 Portugal 28178 G 1654 1654
285 Portugal 28179 G 1654 1654
286 Portugal 28180 G 1654 1654
287 Portugal 28181 T 1654 1654
288 Portugal 28182 A 1654 1654
289 Portugal 28183 G 1654 1654
290 Portugal 28184 T 1654 1654
291 Portugal 28185 C 1654 1654
292 Portugal 28186 T 1654 1654
293 Portugal 28187 T 1654 1654
294 Portugal 28188 G 1654 1654
295 Portugal 28189 T 1654 1654
296 Portugal 28190 A 1654 1654
297 Portugal 28191 G 1654 1654
298 Portugal 28192 T 1654 1654
299 Portugal 28193 G 1654 1654
300 Portugal 28194 C 1654 1654
301 Portugal 28195 G 1654 1654
302 Portugal 28196 T 1654 1654
303 Portugal 28197 T 1654 1654
304 Portugal 28198 G 1654 1654
305 Portugal 28199 T 1654 1654
306 Portugal 28200 T 1654 1654
307 Portugal 28201 C 1654 1654
308 Portugal 28202 G 1654 1654
309 Portugal 28203 T 1654 1654
310 Portugal 28204 T 1654 1654
311 Portugal 28205 C 1654 1654
312 Portugal 28206 T 1654 1654
313 Portugal 28207 A 1654 1654
314 Portugal 28208 T 1654 1654
315 Portugal 28209 G A 1654 1653 Glu106Lys
316 Portugal 28210 A 1654 1654
317 Portugal 28211 A 1654 1654
318 Portugal 28212 G 1654 1654
319 Portugal 28213 A 1654 1654
320 Portugal 28214 C 1654 1654
321 Portugal 28215 T 1654 1654
322 Portugal 28216 T 1654 1654
323 Portugal 28217 T 1654 1654
324 Portugal 28218 T 1654 1654
325 Portugal 28219 T 1654 1654
326 Portugal 28220 A 1654 1654
327 Portugal 28221 G 1654 1654
328 Portugal 28222 A 1654 1654
329 Portugal 28223 G 1654 1654
330 Portugal 28224 T 1654 1654
331 Portugal 28225 A 1654 1654
332 Portugal 28226 T 1654 1654
333 Portugal 28227 C 1654 1654
334 Portugal 28228 A 1654 1654
335 Portugal 28229 T 1654 1654
336 Portugal 28230 G 1654 1654
337 Portugal 28231 A 1654 1654
338 Portugal 28232 C 1654 1654
339 Portugal 28233 G 1654 1654
340 Portugal 28234 T 1654 1654
341 Portugal 28235 T 1654 1654
342 Portugal 28236 C 1654 1654
343 Portugal 28237 G T 1654 1653 Arg115Leu
344 Portugal 28238 T 1654 1654
345 Portugal 28239 G 1654 1654
346 Portugal 28240 T 1654 1654
347 Portugal 28241 T 1654 1654
348 Portugal 28242 G 1654 1654
349 Portugal 28243 T 1654 1654
350 Portugal 28244 T 1654 1654
351 Portugal 28245 T 1654 1654
352 Portugal 28246 T 1654 1654
353 Portugal 28247 A 1654 1654
354 Portugal 28248 G 1654 1654
355 Portugal 28249 A 1654 1654
356 Portugal 28250 T 1654 1654
357 Portugal 28251 T 1654 1654
358 Portugal 28252 T 1654 1654
359 Portugal 28253 C T 1654 1652 Phe120Phe
360 Portugal 28254 A 1654 1654
361 Portugal 28255 T 1654 1654
362 Portugal 28256 C 1654 1654
363 Portugal 28257 T 1654 1654
364 Portugal 28258 A 1654 1654
365 Portugal 28259 A 1654 1654