National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1        
C     21                                        
D     22                                        
E 2   18     1                                  
F     24         1                              
G     15                             1          
H     12             1                          
I     30               1   1                    
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                               1        
Q 2   18                                        
R     12   1           1   1                    
S     27   1       1       1           1        
T     15                                 1      
V     36               1                   1    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 27894 A 434 434
1 Poland 27895 T 434 434
2 Poland 27896 G 434 434
3 Poland 27897 A 434 434
4 Poland 27898 A 434 434
5 Poland 27899 A 434 434
6 Poland 27900 T 434 434
7 Poland 27901 T 434 434
8 Poland 27902 T 434 434
9 Poland 27903 C 434 434
10 Poland 27904 T 434 434
11 Poland 27905 T 434 434
12 Poland 27906 G 434 434
13 Poland 27907 T 434 434
14 Poland 27908 T 434 434
15 Poland 27909 T 434 434
16 Poland 27910 T 434 434
17 Poland 27911 C 434 434
18 Poland 27912 T 434 434
19 Poland 27913 T 434 434
20 Poland 27914 A 434 434
21 Poland 27915 G A 434 433 Gly8Arg
22 Poland 27916 G 434 434
23 Poland 27917 A 434 434
24 Poland 27918 A 434 434
25 Poland 27919 T 434 434
26 Poland 27920 C 434 434
27 Poland 27921 A 434 434
28 Poland 27922 T 434 434
29 Poland 27923 C 434 434
30 Poland 27924 A 434 434
31 Poland 27925 C 434 434
32 Poland 27926 A 434 434
33 Poland 27927 A 434 434
34 Poland 27928 C 434 434
35 Poland 27929 T 434 434
36 Poland 27930 G 434 434
37 Poland 27931 T 434 434
38 Poland 27932 A 434 434
39 Poland 27933 G 434 434
40 Poland 27934 C 434 434
41 Poland 27935 T 434 434
42 Poland 27936 G 434 434
43 Poland 27937 C 434 434
44 Poland 27938 A 434 434
45 Poland 27939 T 434 434
46 Poland 27940 T 434 434
47 Poland 27941 T 434 434
48 Poland 27942 C 434 434
49 Poland 27943 A 434 434
50 Poland 27944 C T 434 431 His17His
51 Poland 27945 C 434 434
52 Poland 27946 A 434 434
53 Poland 27947 A 434 434
54 Poland 27948 G 434 434
55 Poland 27949 A 434 434
56 Poland 27950 A 434 434
57 Poland 27951 T 434 434
58 Poland 27952 G 434 434
59 Poland 27953 T 434 434
60 Poland 27954 A T 434 433 Ser21Cys
61 Poland 27955 G 434 434
62 Poland 27956 T 434 434
63 Poland 27957 T 434 434
64 Poland 27958 T 434 434
65 Poland 27959 A 434 434
66 Poland 27960 C 434 434
67 Poland 27961 A 434 434
68 Poland 27962 G 434 434
69 Poland 27963 T 434 434
70 Poland 27964 C T 434 426 Ser24Leu
71 Poland 27965 A 434 434
72 Poland 27966 T 434 434
73 Poland 27967 G 434 434
74 Poland 27968 T 434 434
75 Poland 27969 A 434 434
76 Poland 27970 C 434 434
77 Poland 27971 T 434 434
78 Poland 27972 C T 434 433 Gln27*
79 Poland 27973 A 434 434
80 Poland 27974 A 434 434
81 Poland 27975 C 434 434
82 Poland 27976 A 434 434
83 Poland 27977 T 434 434
84 Poland 27978 C T 434 433 Gln29*
85 Poland 27979 A 434 434
86 Poland 27980 A 434 434
87 Poland 27981 C 434 434
88 Poland 27982 C 434 434
89 Poland 27983 A 434 434
90 Poland 27984 T 434 434
91 Poland 27985 A 434 434
92 Poland 27986 T 434 434
93 Poland 27987 G 434 434
94 Poland 27988 T 434 434
95 Poland 27989 A 434 434
96 Poland 27990 G 434 434
97 Poland 27991 T 434 434
98 Poland 27992 T 434 434
99 Poland 27993 G 434 434
100 Poland 27994 A 434 434
101 Poland 27995 T 434 434
102 Poland 27996 G 434 434
103 Poland 27997 A 434 434
104 Poland 27998 C 434 434
105 Poland 27999 C 434 434
106 Poland 28000 C 434 434
107 Poland 28001 G 434 434
108 Poland 28002 T 434 434
109 Poland 28003 G 434 434
110 Poland 28004 T 434 434
111 Poland 28005 C T 434 433 Pro38Ser
112 Poland 28006 C 434 434
113 Poland 28007 T 434 434
114 Poland 28008 A 434 434
115 Poland 28009 T 434 434
116 Poland 28010 T 434 434
117 Poland 28011 C 434 433
118 Poland 28012 A 434 434
119 Poland 28013 C 434 434
120 Poland 28014 T 434 434
121 Poland 28015 T 434 434
122 Poland 28016 C 434 434
123 Poland 28017 T 434 434
124 Poland 28018 A 434 434
125 Poland 28019 T 434 434
126 Poland 28020 T 434 434
127 Poland 28021 C 434 434
128 Poland 28022 T 434 434
129 Poland 28023 A 434 434
130 Poland 28024 A 434 434
131 Poland 28025 A 434 434
132 Poland 28026 T 434 434
133 Poland 28027 G 434 434
134 Poland 28028 G 434 434
135 Poland 28029 T 434 434
136 Poland 28030 A 434 434
137 Poland 28031 T 434 434
138 Poland 28032 A 434 434
139 Poland 28033 T 434 434
140 Poland 28034 T 434 434
141 Poland 28035 A 434 434
142 Poland 28036 G 434 434
143 Poland 28037 A 434 434
144 Poland 28038 G 434 434
145 Poland 28039 T 434 434
146 Poland 28040 A 434 434
147 Poland 28041 G 434 434
148 Poland 28042 G 434 434
149 Poland 28043 A 434 434
150 Poland 28044 G 434 434
151 Poland 28045 C 434 434
152 Poland 28046 T 434 434
153 Poland 28047 A 434 434
154 Poland 28048 G T 434 433 Arg52Ile
155 Poland 28049 A 434 434
156 Poland 28050 A 434 434
157 Poland 28051 A 434 434
158 Poland 28052 A 434 434
159 Poland 28053 T 434 434
160 Poland 28054 C 434 434
161 Poland 28055 A 434 434
162 Poland 28056 G 434 434
163 Poland 28057 C 434 434
164 Poland 28058 A 434 434
165 Poland 28059 C 434 434
166 Poland 28060 C 434 434
167 Poland 28061 T 434 434
168 Poland 28062 T 434 434
169 Poland 28063 T 434 434
170 Poland 28064 A 434 434
171 Poland 28065 A 434 434
172 Poland 28066 T 434 434
173 Poland 28067 T 434 434
174 Poland 28068 G T 434 433 Glu59*
175 Poland 28069 A 434 434
176 Poland 28070 A 434 434
177 Poland 28071 T 434 434
178 Poland 28072 T 434 434
179 Poland 28073 G 434 434
180 Poland 28074 T 434 434
181 Poland 28075 G 434 434
182 Poland 28076 C 434 434
183 Poland 28077 G 434 434
184 Poland 28078 T 434 434
185 Poland 28079 G T 434 433 Val62Val
186 Poland 28080 G 434 434
187 Poland 28081 A 434 434
188 Poland 28082 T 434 434
189 Poland 28083 G 434 434
190 Poland 28084 A 434 434
191 Poland 28085 G T 434 433 Glu64Asp
192 Poland 28086 G T 434 433 Ala65Ser
193 Poland 28087 C 434 434
194 Poland 28088 T 434 434
195 Poland 28089 G 434 434
196 Poland 28090 G 434 434
197 Poland 28091 T 434 434
198 Poland 28092 T 434 434
199 Poland 28093 C 434 434
200 Poland 28094 T 434 434
201 Poland 28095 A 434 434
202 Poland 28096 A 434 434
203 Poland 28097 A 434 434
204 Poland 28098 T 434 434
205 Poland 28099 C 434 434
206 Poland 28100 A 434 434
207 Poland 28101 C 434 434
208 Poland 28102 C 434 434
209 Poland 28103 C 434 434
210 Poland 28104 A 434 434
211 Poland 28105 T 434 434
212 Poland 28106 T 434 434
213 Poland 28107 C 434 434
214 Poland 28108 A 434 434
215 Poland 28109 G 434 434
216 Poland 28110 T 434 434
217 Poland 28111 A G 434 433 Tyr73Cys
218 Poland 28112 C 434 434
219 Poland 28113 A 434 434
220 Poland 28114 T 434 434
221 Poland 28115 C 434 434
222 Poland 28116 G 434 434
223 Poland 28117 A 434 434
224 Poland 28118 T 434 434
225 Poland 28119 A 434 434
226 Poland 28120 T 434 434
227 Poland 28121 C 434 434
228 Poland 28122 G 434 434
229 Poland 28123 G 434 434
230 Poland 28124 T 434 434
231 Poland 28125 A 434 434
232 Poland 28126 A 434 434
233 Poland 28127 T 434 434
234 Poland 28128 T 434 434
235 Poland 28129 A 434 434
236 Poland 28130 T 434 434
237 Poland 28131 A 434 434
238 Poland 28132 C 434 434
239 Poland 28133 A T 434 431 Thr80Thr
240 Poland 28134 G A 434 433 Val81Ile
241 Poland 28135 T 434 434
242 Poland 28136 T 434 434
243 Poland 28137 T 434 434
244 Poland 28138 C 434 434
245 Poland 28139 C A 434 433 Ser82Ser
246 Poland 28140 T 434 434
247 Poland 28141 G 434 434
248 Poland 28142 T 434 434
249 Poland 28143 T 434 434
250 Poland 28144 T C 434 433 Leu84Ser
251 Poland 28145 A 434 434
252 Poland 28146 C 434 434
253 Poland 28147 C 434 434
254 Poland 28148 T 434 434
255 Poland 28149 T 434 434
256 Poland 28150 T 434 434
257 Poland 28151 T 434 434
258 Poland 28152 A 434 434
259 Poland 28153 C 434 434
260 Poland 28154 A 434 434
261 Poland 28155 A 434 434
262 Poland 28156 T 434 434
263 Poland 28157 T 434 434
264 Poland 28158 A 434 434
265 Poland 28159 A 434 434
266 Poland 28160 T 434 434
267 Poland 28161 T 434 434
268 Poland 28162 G 434 434
269 Poland 28163 C 434 434
270 Poland 28164 C 434 434
271 Poland 28165 A 434 434
272 Poland 28166 G 434 434
273 Poland 28167 G 434 434
274 Poland 28168 A 434 434
275 Poland 28169 A 434 434
276 Poland 28170 C 434 434
277 Poland 28171 C 434 434
278 Poland 28172 T 434 434
279 Poland 28173 A 434 434
280 Poland 28174 A 434 434
281 Poland 28175 A 434 434
282 Poland 28176 T 434 434
283 Poland 28177 T 434 434
284 Poland 28178 G 434 434
285 Poland 28179 G 434 434
286 Poland 28180 G 434 434
287 Poland 28181 T 434 434
288 Poland 28182 A G 434 432 Ser97Gly
289 Poland 28183 G 434 434
290 Poland 28184 T 434 434
291 Poland 28185 C 434 434
292 Poland 28186 T 434 434
293 Poland 28187 T 434 434
294 Poland 28188 G 434 434
295 Poland 28189 T 434 434
296 Poland 28190 A 434 434
297 Poland 28191 G 434 434
298 Poland 28192 T 434 434
299 Poland 28193 G 434 434
300 Poland 28194 C 434 434
301 Poland 28195 G 434 434
302 Poland 28196 T 434 434
303 Poland 28197 T 434 434
304 Poland 28198 G 434 434
305 Poland 28199 T 434 434
306 Poland 28200 T 434 434
307 Poland 28201 C 434 434
308 Poland 28202 G 434 434
309 Poland 28203 T 434 434
310 Poland 28204 T 434 434
311 Poland 28205 C 434 434
312 Poland 28206 T 434 434
313 Poland 28207 A 434 434
314 Poland 28208 T 434 434
315 Poland 28209 G 434 434
316 Poland 28210 A 434 434
317 Poland 28211 A 434 434
318 Poland 28212 G 434 434
319 Poland 28213 A 434 434
320 Poland 28214 C 434 433
321 Poland 28215 T 434 434
322 Poland 28216 T 434 434
323 Poland 28217 T 434 434
324 Poland 28218 T 434 434
325 Poland 28219 T 434 434
326 Poland 28220 A 434 434
327 Poland 28221 G T 434 433 Glu110*
328 Poland 28222 A 434 434
329 Poland 28223 G 434 434
330 Poland 28224 T 434 434
331 Poland 28225 A 434 434
332 Poland 28226 T 434 434
333 Poland 28227 C 434 434
334 Poland 28228 A 434 434
335 Poland 28229 T 434 434
336 Poland 28230 G 434 434
337 Poland 28231 A 434 434
338 Poland 28232 C 434 434
339 Poland 28233 G 434 434
340 Poland 28234 T 434 434
341 Poland 28235 T 434 434
342 Poland 28236 C T 434 433 Arg115Cys
343 Poland 28237 G T 434 433 Arg115Leu
344 Poland 28238 T 434 434
345 Poland 28239 G 434 434
346 Poland 28240 T 434 434
347 Poland 28241 T 434 434
348 Poland 28242 G 434 434
349 Poland 28243 T 434 434
350 Poland 28244 T 434 434
351 Poland 28245 T 434 434
352 Poland 28246 T 434 434
353 Poland 28247 A 434 434
354 Poland 28248 G 434 434
355 Poland 28249 A 434 434
356 Poland 28250 T 434 434
357 Poland 28251 T 433 433
358 Poland 28252 T 433 433
359 Poland 28253 C T 433 426 Phe120Phe
360 Poland 28254 A C 433 432 Ile121Leu
361 Poland 28255 T 433 433
362 Poland 28256 C T 433 431 Ile121Ile
363 Poland 28257 T 433 433
364 Poland 28258 A 433 433
365 Poland 28259 A 433 433