National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22           1                            
E 1   18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                   1                    
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 27894 A 28 28
1 Philippines 27895 T 28 28
2 Philippines 27896 G 28 28
3 Philippines 27897 A 28 28
4 Philippines 27898 A 28 28
5 Philippines 27899 A 28 28
6 Philippines 27900 T 28 28
7 Philippines 27901 T 28 28
8 Philippines 27902 T 28 28
9 Philippines 27903 C 28 28
10 Philippines 27904 T 28 28
11 Philippines 27905 T 28 28
12 Philippines 27906 G 28 28
13 Philippines 27907 T 28 28
14 Philippines 27908 T 28 28
15 Philippines 27909 T 28 28
16 Philippines 27910 T 28 28
17 Philippines 27911 C 28 28
18 Philippines 27912 T 28 28
19 Philippines 27913 T 28 28
20 Philippines 27914 A 28 28
21 Philippines 27915 G 28 28
22 Philippines 27916 G 28 28
23 Philippines 27917 A 28 28
24 Philippines 27918 A 28 28
25 Philippines 27919 T 28 28
26 Philippines 27920 C 28 28
27 Philippines 27921 A 28 28
28 Philippines 27922 T 28 28
29 Philippines 27923 C 28 28
30 Philippines 27924 A 28 28
31 Philippines 27925 C 28 28
32 Philippines 27926 A 28 28
33 Philippines 27927 A 28 28
34 Philippines 27928 C 28 28
35 Philippines 27929 T 28 28
36 Philippines 27930 G 28 28
37 Philippines 27931 T 28 28
38 Philippines 27932 A 28 28
39 Philippines 27933 G 28 28
40 Philippines 27934 C 28 28
41 Philippines 27935 T 28 28
42 Philippines 27936 G 28 28
43 Philippines 27937 C 28 28
44 Philippines 27938 A 28 28
45 Philippines 27939 T 28 28
46 Philippines 27940 T 28 28
47 Philippines 27941 T 28 28
48 Philippines 27942 C 28 28
49 Philippines 27943 A 28 28
50 Philippines 27944 C 28 28
51 Philippines 27945 C 28 28
52 Philippines 27946 A 28 28
53 Philippines 27947 A 28 28
54 Philippines 27948 G 28 28
55 Philippines 27949 A 28 28
56 Philippines 27950 A 28 28
57 Philippines 27951 T 28 28
58 Philippines 27952 G 28 28
59 Philippines 27953 T 28 28
60 Philippines 27954 A 28 28
61 Philippines 27955 G 28 28
62 Philippines 27956 T 28 28
63 Philippines 27957 T 28 28
64 Philippines 27958 T 28 28
65 Philippines 27959 A 28 28
66 Philippines 27960 C 28 28
67 Philippines 27961 A 28 28
68 Philippines 27962 G 28 28
69 Philippines 27963 T 28 28
70 Philippines 27964 C 28 28
71 Philippines 27965 A 28 28
72 Philippines 27966 T 28 28
73 Philippines 27967 G 28 28
74 Philippines 27968 T 28 28
75 Philippines 27969 A 28 28
76 Philippines 27970 C 28 28
77 Philippines 27971 T 28 28
78 Philippines 27972 C 28 28
79 Philippines 27973 A 28 28
80 Philippines 27974 A 28 28
81 Philippines 27975 C 28 28
82 Philippines 27976 A 28 28
83 Philippines 27977 T 28 28
84 Philippines 27978 C 28 28
85 Philippines 27979 A 28 28
86 Philippines 27980 A 28 28
87 Philippines 27981 C 28 28
88 Philippines 27982 C 28 28
89 Philippines 27983 A 28 28
90 Philippines 27984 T 28 28
91 Philippines 27985 A 28 28
92 Philippines 27986 T 28 28
93 Philippines 27987 G 28 28
94 Philippines 27988 T 28 28
95 Philippines 27989 A 28 28
96 Philippines 27990 G 28 28
97 Philippines 27991 T 28 28
98 Philippines 27992 T 28 28
99 Philippines 27993 G 28 28
100 Philippines 27994 A 28 28
101 Philippines 27995 T 28 28
102 Philippines 27996 G 28 28
103 Philippines 27997 A 28 28
104 Philippines 27998 C 28 28
105 Philippines 27999 C 28 28
106 Philippines 28000 C 28 28
107 Philippines 28001 G 28 28
108 Philippines 28002 T 28 28
109 Philippines 28003 G 28 28
110 Philippines 28004 T 28 28
111 Philippines 28005 C 28 28
112 Philippines 28006 C 28 28
113 Philippines 28007 T 28 28
114 Philippines 28008 A 28 28
115 Philippines 28009 T 28 28
116 Philippines 28010 T 28 28
117 Philippines 28011 C 28 28
118 Philippines 28012 A 28 28
119 Philippines 28013 C 28 28
120 Philippines 28014 T 28 28
121 Philippines 28015 T 28 28
122 Philippines 28016 C 28 28
123 Philippines 28017 T 28 28
124 Philippines 28018 A 28 28
125 Philippines 28019 T 28 28
126 Philippines 28020 T 28 28
127 Philippines 28021 C 28 28
128 Philippines 28022 T 28 28
129 Philippines 28023 A 28 28
130 Philippines 28024 A 28 28
131 Philippines 28025 A 28 28
132 Philippines 28026 T 28 28
133 Philippines 28027 G 28 28
134 Philippines 28028 G 28 28
135 Philippines 28029 T 28 28
136 Philippines 28030 A 28 28
137 Philippines 28031 T 28 28
138 Philippines 28032 A 28 28
139 Philippines 28033 T 28 28
140 Philippines 28034 T 28 28
141 Philippines 28035 A 28 28
142 Philippines 28036 G 28 28
143 Philippines 28037 A 28 28
144 Philippines 28038 G 28 28
145 Philippines 28039 T 28 28
146 Philippines 28040 A 28 28
147 Philippines 28041 G 28 28
148 Philippines 28042 G 28 28
149 Philippines 28043 A 28 28
150 Philippines 28044 G 28 28
151 Philippines 28045 C 28 28
152 Philippines 28046 T 28 28
153 Philippines 28047 A 28 28
154 Philippines 28048 G 28 28
155 Philippines 28049 A 28 28
156 Philippines 28050 A 28 28
157 Philippines 28051 A 28 28
158 Philippines 28052 A 28 28
159 Philippines 28053 T 28 28
160 Philippines 28054 C 28 28
161 Philippines 28055 A 28 28
162 Philippines 28056 G 28 28
163 Philippines 28057 C 28 28
164 Philippines 28058 A 28 28
165 Philippines 28059 C 28 28
166 Philippines 28060 C 28 28
167 Philippines 28061 T 28 28
168 Philippines 28062 T 28 28
169 Philippines 28063 T 28 28
170 Philippines 28064 A 28 28
171 Philippines 28065 A 28 28
172 Philippines 28066 T 28 28
173 Philippines 28067 T 28 28
174 Philippines 28068 G 28 28
175 Philippines 28069 A 28 28
176 Philippines 28070 A 28 28
177 Philippines 28071 T 28 28
178 Philippines 28072 T 28 28
179 Philippines 28073 G 28 28
180 Philippines 28074 T 28 28
181 Philippines 28075 G 28 28
182 Philippines 28076 C 28 28
183 Philippines 28077 G 28 28
184 Philippines 28078 T 28 28
185 Philippines 28079 G 28 28
186 Philippines 28080 G 28 28
187 Philippines 28081 A G 28 27 Asp63Gly
188 Philippines 28082 T 28 28
189 Philippines 28083 G 28 28
190 Philippines 28084 A 28 28
191 Philippines 28085 G 28 28
192 Philippines 28086 G 28 28
193 Philippines 28087 C 28 28
194 Philippines 28088 T 28 28
195 Philippines 28089 G 28 28
196 Philippines 28090 G 28 28
197 Philippines 28091 T 28 28
198 Philippines 28092 T 28 28
199 Philippines 28093 C 28 28
200 Philippines 28094 T 28 28
201 Philippines 28095 A 28 28
202 Philippines 28096 A 28 28
203 Philippines 28097 A 28 28
204 Philippines 28098 T 28 28
205 Philippines 28099 C 28 28
206 Philippines 28100 A 28 28
207 Philippines 28101 C 28 28
208 Philippines 28102 C 28 28
209 Philippines 28103 C 28 28
210 Philippines 28104 A 28 28
211 Philippines 28105 T 36 36
212 Philippines 28106 T 36 36
213 Philippines 28107 C 36 36
214 Philippines 28108 A 36 36
215 Philippines 28109 G 36 36
216 Philippines 28110 T 36 36
217 Philippines 28111 A 36 36
218 Philippines 28112 C 36 36
219 Philippines 28113 A 36 36
220 Philippines 28114 T 36 36
221 Philippines 28115 C 36 36
222 Philippines 28116 G 36 36
223 Philippines 28117 A 36 36
224 Philippines 28118 T 36 36
225 Philippines 28119 A 36 36
226 Philippines 28120 T 36 36
227 Philippines 28121 C 36 36
228 Philippines 28122 G 36 36
229 Philippines 28123 G 36 36
230 Philippines 28124 T 36 36
231 Philippines 28125 A 36 36
232 Philippines 28126 A 36 36
233 Philippines 28127 T 36 36
234 Philippines 28128 T 36 36
235 Philippines 28129 A 36 36
236 Philippines 28130 T 36 36
237 Philippines 28131 A 36 36
238 Philippines 28132 C 36 36
239 Philippines 28133 A 36 36
240 Philippines 28134 G 36 36
241 Philippines 28135 T 36 36
242 Philippines 28136 T 36 36
243 Philippines 28137 T 36 36
244 Philippines 28138 C 36 36
245 Philippines 28139 C 36 36
246 Philippines 28140 T 36 36
247 Philippines 28141 G 36 36
248 Philippines 28142 T 36 36
249 Philippines 28143 T 36 36
250 Philippines 28144 T 36 36
251 Philippines 28145 A 36 36
252 Philippines 28146 C 36 36
253 Philippines 28147 C 36 36
254 Philippines 28148 T 36 36
255 Philippines 28149 T 36 36
256 Philippines 28150 T 36 36
257 Philippines 28151 T 36 36
258 Philippines 28152 A 36 36
259 Philippines 28153 C 36 36
260 Philippines 28154 A 36 36
261 Philippines 28155 A 36 36
262 Philippines 28156 T 36 36
263 Philippines 28157 T 36 36
264 Philippines 28158 A 36 36
265 Philippines 28159 A 36 36
266 Philippines 28160 T 36 36
267 Philippines 28161 T 36 36
268 Philippines 28162 G 36 36
269 Philippines 28163 C 36 36
270 Philippines 28164 C 36 36
271 Philippines 28165 A 36 36
272 Philippines 28166 G 36 36
273 Philippines 28167 G 36 36
274 Philippines 28168 A 36 36
275 Philippines 28169 A 36 36
276 Philippines 28170 C 36 36
277 Philippines 28171 C 36 36
278 Philippines 28172 T 36 36
279 Philippines 28173 A 36 36
280 Philippines 28174 A 36 36
281 Philippines 28175 A 36 36
282 Philippines 28176 T 36 36
283 Philippines 28177 T 36 36
284 Philippines 28178 G A 36 33 Leu95Leu
285 Philippines 28179 G 36 36
286 Philippines 28180 G 36 36
287 Philippines 28181 T 36 36
288 Philippines 28182 A 36 36
289 Philippines 28183 G 36 36
290 Philippines 28184 T 36 36
291 Philippines 28185 C 36 36
292 Philippines 28186 T 36 36
293 Philippines 28187 T 36 36
294 Philippines 28188 G 36 36
295 Philippines 28189 T 36 36
296 Philippines 28190 A 36 36
297 Philippines 28191 G 36 36
298 Philippines 28192 T 36 36
299 Philippines 28193 G 36 36
300 Philippines 28194 C 36 36
301 Philippines 28195 G 36 36
302 Philippines 28196 T 36 36
303 Philippines 28197 T 36 36
304 Philippines 28198 G 36 36
305 Philippines 28199 T 36 36
306 Philippines 28200 T 36 36
307 Philippines 28201 C 36 36
308 Philippines 28202 G 36 36
309 Philippines 28203 T 36 36
310 Philippines 28204 T 36 36
311 Philippines 28205 C 36 36
312 Philippines 28206 T 36 36
313 Philippines 28207 A 36 36
314 Philippines 28208 T 36 36
315 Philippines 28209 G T 36 35 Glu106*
316 Philippines 28210 A 36 36
317 Philippines 28211 A 36 36
318 Philippines 28212 G 36 36
319 Philippines 28213 A 36 36
320 Philippines 28214 C 36 36
321 Philippines 28215 T 36 36
322 Philippines 28216 T 36 36
323 Philippines 28217 T 36 36
324 Philippines 28218 T 36 36
325 Philippines 28219 T 36 36
326 Philippines 28220 A 36 36
327 Philippines 28221 G 36 36
328 Philippines 28222 A 36 36
329 Philippines 28223 G 36 36
330 Philippines 28224 T 36 36
331 Philippines 28225 A 36 36
332 Philippines 28226 T 36 36
333 Philippines 28227 C 36 36
334 Philippines 28228 A 36 36
335 Philippines 28229 T 36 36
336 Philippines 28230 G 36 36
337 Philippines 28231 A 36 36
338 Philippines 28232 C 36 36
339 Philippines 28233 G 36 36
340 Philippines 28234 T 36 36
341 Philippines 28235 T 36 36
342 Philippines 28236 C 36 36
343 Philippines 28237 G 36 36
344 Philippines 28238 T 36 36
345 Philippines 28239 G 36 36
346 Philippines 28240 T 36 36
347 Philippines 28241 T 36 36
348 Philippines 28242 G 36 36
349 Philippines 28243 T 36 36
350 Philippines 28244 T 36 36
351 Philippines 28245 T 36 36
352 Philippines 28246 T 36 36
353 Philippines 28247 A 36 36
354 Philippines 28248 G 36 36
355 Philippines 28249 A 36 36
356 Philippines 28250 T 36 36
357 Philippines 28251 T 36 36
358 Philippines 28252 T 36 36
359 Philippines 28253 C 36 36
360 Philippines 28254 A 36 36
361 Philippines 28255 T 36 36
362 Philippines 28256 C 36 36
363 Philippines 28257 T 36 36
364 Philippines 28258 A 36 36
365 Philippines 28259 A 36 36