National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 1                             1 1      
C     21   1                                    
D     22     2                                 1
E 1   18                           1            
F     24         2         1                    
G     15     1                                  
H     12             1                          
I     30                                 1      
K     15                                 1      
L     30                               1   1    
M     3                                        
N     6                                        
P     21                   1     1              
Q 1   18                                        
R     12               1                 1      
S     27         1         2                    
T     15               1                        
V     36         3                              
W     3                             1          
Y     21   1         1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 27894 A 527 527
1 Peru 27895 T 527 527
2 Peru 27896 G 527 527
3 Peru 27897 A 527 527
4 Peru 27898 A 527 527
5 Peru 27899 A 527 527
6 Peru 27900 T 527 527
7 Peru 27901 T 527 527
8 Peru 27902 T 528 528
9 Peru 27903 C 528 528
10 Peru 27904 T 528 528
11 Peru 27905 T 528 528
12 Peru 27906 G 528 528
13 Peru 27907 T 528 528
14 Peru 27908 T 528 528
15 Peru 27909 T 528 528
16 Peru 27910 T 528 528
17 Peru 27911 C T,A 528 525 Phe6Leu-p.Phe6Phe
18 Peru 27912 T 528 528
19 Peru 27913 T 528 528
20 Peru 27914 A 528 528
21 Peru 27915 G 528 528
22 Peru 27916 G 528 528
23 Peru 27917 A 528 528
24 Peru 27918 A 528 528
25 Peru 27919 T C 528 527 Ile9Thr
26 Peru 27920 C 528 528
27 Peru 27921 A 528 528
28 Peru 27922 T 528 528
29 Peru 27923 C 528 528
30 Peru 27924 A 528 528
31 Peru 27925 C 528 528
32 Peru 27926 A 528 528
33 Peru 27927 A 528 526
34 Peru 27928 C 528 526
35 Peru 27929 T 528 526
36 Peru 27930 G 528 526
37 Peru 27931 T 528 526
38 Peru 27932 A 528 526
39 Peru 27933 G 528 526
40 Peru 27934 C 528 526
41 Peru 27935 T 528 526
42 Peru 27936 G 528 526
43 Peru 27937 C 528 526
44 Peru 27938 A 528 526
45 Peru 27939 T 528 526
46 Peru 27940 T 528 526
47 Peru 27941 T 528 526
48 Peru 27942 C 528 526
49 Peru 27943 A 528 526
50 Peru 27944 C T 528 524 His17His
51 Peru 27945 C 528 526
52 Peru 27946 A 528 526
53 Peru 27947 A 528 526
54 Peru 27948 G T,C 528 524 Glu19*-p.Glu19Gln
55 Peru 27949 A 528 528
56 Peru 27950 A 528 528
57 Peru 27951 T 528 528
58 Peru 27952 G 528 528
59 Peru 27953 T 528 528
60 Peru 27954 A 528 528
61 Peru 27955 G 528 528
62 Peru 27956 T 528 528
63 Peru 27957 T 528 528
64 Peru 27958 T 528 528
65 Peru 27959 A 528 528
66 Peru 27960 C 528 528
67 Peru 27961 A 528 528
68 Peru 27962 G 528 528
69 Peru 27963 T 528 528
70 Peru 27964 C T 528 527 Ser24Leu
71 Peru 27965 A 528 528
72 Peru 27966 T 528 528
73 Peru 27967 G 528 528
74 Peru 27968 T 528 528
75 Peru 27969 A 528 528
76 Peru 27970 C T 528 527 Thr26Ile
77 Peru 27971 T 528 528
78 Peru 27972 C T 528 524 Gln27*
79 Peru 27973 A 528 528
80 Peru 27974 A 528 528
81 Peru 27975 C 528 528
82 Peru 27976 A 528 528
83 Peru 27977 T 528 528
84 Peru 27978 C 528 528
85 Peru 27979 A 528 528
86 Peru 27980 A 528 528
87 Peru 27981 C 528 528
88 Peru 27982 C T 528 526 Pro30Leu
89 Peru 27983 A 528 528
90 Peru 27984 T 528 528
91 Peru 27985 A 528 528
92 Peru 27986 T 528 528
93 Peru 27987 G 528 528
94 Peru 27988 T 528 528
95 Peru 27989 A 528 528
96 Peru 27990 G 528 528
97 Peru 27991 T 528 528
98 Peru 27992 T 528 528
99 Peru 27993 G 528 528
100 Peru 27994 A 528 528
101 Peru 27995 T 528 528
102 Peru 27996 G 528 528
103 Peru 27997 A 528 528
104 Peru 27998 C T 528 522 Asp35Asp
105 Peru 27999 C 528 528
106 Peru 28000 C 528 528
107 Peru 28001 G T 528 526 Pro36Pro
108 Peru 28002 T 528 528
109 Peru 28003 G 528 528
110 Peru 28004 T 528 528
111 Peru 28005 C 528 528
112 Peru 28006 C 528 528
113 Peru 28007 T 528 528
114 Peru 28008 A 528 528
115 Peru 28009 T 528 528
116 Peru 28010 T 528 528
117 Peru 28011 C 528 528
118 Peru 28012 A 528 528
119 Peru 28013 C 528 527
120 Peru 28014 T 528 528
121 Peru 28015 T 528 528
122 Peru 28016 C 528 528
123 Peru 28017 T 528 528
124 Peru 28018 A 528 528
125 Peru 28019 T 528 528
126 Peru 28020 T 528 528
127 Peru 28021 C 528 528
128 Peru 28022 T 528 528
129 Peru 28023 A 528 528
130 Peru 28024 A 528 528
131 Peru 28025 A 528 528
132 Peru 28026 T C 528 527 Trp45Arg
133 Peru 28027 G 528 528
134 Peru 28028 G 528 528
135 Peru 28029 T 528 528
136 Peru 28030 A 528 528
137 Peru 28031 T 528 528
138 Peru 28032 A 528 528
139 Peru 28033 T 528 528
140 Peru 28034 T 528 528
141 Peru 28035 A 528 528
142 Peru 28036 G 528 528
143 Peru 28037 A 528 528
144 Peru 28038 G 528 528
145 Peru 28039 T 528 528
146 Peru 28040 A 528 528
147 Peru 28041 G 528 528
148 Peru 28042 G 528 528
149 Peru 28043 A 528 528
150 Peru 28044 G A 528 527 Ala51Thr
151 Peru 28045 C 528 528
152 Peru 28046 T 528 528
153 Peru 28047 A 528 528
154 Peru 28048 G C,T 528 525 Arg52Thr-p.Arg52Ile
155 Peru 28049 A 528 528
156 Peru 28050 A 528 528
157 Peru 28051 A 528 528
158 Peru 28052 A 528 528
159 Peru 28053 T 528 528
160 Peru 28054 C T 528 527 Ser54Leu
161 Peru 28055 A 528 528
162 Peru 28056 G 528 528
163 Peru 28057 C 526 526
164 Peru 28058 A 526 526
165 Peru 28059 C 526 526
166 Peru 28060 C 526 526
167 Peru 28061 T 526 526
168 Peru 28062 T 526 526
169 Peru 28063 T 526 526
170 Peru 28064 A 526 526
171 Peru 28065 A 526 526
172 Peru 28066 T 526 526
173 Peru 28067 T 526 526
174 Peru 28068 G 526 526
175 Peru 28069 A 526 526
176 Peru 28070 A 526 526
177 Peru 28071 T 526 526
178 Peru 28072 T 526 526
179 Peru 28073 G 526 526
180 Peru 28074 T 524 524
181 Peru 28075 G 524 524
182 Peru 28076 C 524 524
183 Peru 28077 G 524 524
184 Peru 28078 T 524 524
185 Peru 28079 G 524 524
186 Peru 28080 G 524 524
187 Peru 28081 A 524 524
188 Peru 28082 T C 524 523 Asp63Asp
189 Peru 28083 G 524 523
190 Peru 28084 A 524 524
191 Peru 28085 G 524 524
192 Peru 28086 G T 524 517 Ala65Ser
193 Peru 28087 C 524 524
194 Peru 28088 T C 524 523 Ala65Ala
195 Peru 28089 G 524 524
196 Peru 28090 G 524 524
197 Peru 28091 T 524 524
198 Peru 28092 T 524 524
199 Peru 28093 C T 524 523 Ser67Phe
200 Peru 28094 T 524 524
201 Peru 28095 A 524 524
202 Peru 28096 A 524 524
203 Peru 28097 A 524 524
204 Peru 28098 T 524 524
205 Peru 28099 C 524 524
206 Peru 28100 A 524 524
207 Peru 28101 C 524 524
208 Peru 28102 C 524 524
209 Peru 28103 C 524 524
210 Peru 28104 A 524 524
211 Peru 28105 T 524 524
212 Peru 28106 T 524 524
213 Peru 28107 C 524 524
214 Peru 28108 A 524 524
215 Peru 28109 G 524 524
216 Peru 28110 T C 524 523 Tyr73His
217 Peru 28111 A G 524 523 Tyr73Cys
218 Peru 28112 C 524 524
219 Peru 28113 A 524 524
220 Peru 28114 T 524 524
221 Peru 28115 C 524 524
222 Peru 28116 G 524 524
223 Peru 28117 A 524 524
224 Peru 28118 T 524 524
225 Peru 28119 A 524 524
226 Peru 28120 T 524 524
227 Peru 28121 C 524 524
228 Peru 28122 G 524 524
229 Peru 28123 G 524 524
230 Peru 28124 T 524 524
231 Peru 28125 A 524 524
232 Peru 28126 A 524 524
233 Peru 28127 T 524 524
234 Peru 28128 T 524 524
235 Peru 28129 A 524 524
236 Peru 28130 T 524 524
237 Peru 28131 A 524 524
238 Peru 28132 C 524 524
239 Peru 28133 A 524 524
240 Peru 28134 G T 526 525 Val81Phe
241 Peru 28135 T 526 526
242 Peru 28136 T 526 526
243 Peru 28137 T 526 526
244 Peru 28138 C 526 526
245 Peru 28139 C 526 526
246 Peru 28140 T 526 526
247 Peru 28141 G 526 526
248 Peru 28142 T 526 526
249 Peru 28143 T 526 526
250 Peru 28144 T C 526 506 Leu84Ser
251 Peru 28145 A 526 526
252 Peru 28146 C 526 526
253 Peru 28147 C 526 526
254 Peru 28148 T 526 526
255 Peru 28149 T 526 526
256 Peru 28150 T 526 526
257 Peru 28151 T 526 526
258 Peru 28152 A 526 526
259 Peru 28153 C 526 526
260 Peru 28154 A 526 526
261 Peru 28155 A 526 526
262 Peru 28156 T 526 526
263 Peru 28157 T 526 526
264 Peru 28158 A 526 526
265 Peru 28159 A 526 526
266 Peru 28160 T 526 526
267 Peru 28161 T 526 526
268 Peru 28162 G 526 526
269 Peru 28163 C 526 526
270 Peru 28164 C 526 526
271 Peru 28165 A 526 526
272 Peru 28166 G 526 526
273 Peru 28167 G 526 526
274 Peru 28168 A 526 526
275 Peru 28169 A 526 526
276 Peru 28170 C 526 526
277 Peru 28171 C 526 526
278 Peru 28172 T 526 526
279 Peru 28173 A 526 526
280 Peru 28174 A C 526 525 Lys94Thr
281 Peru 28175 A 526 526
282 Peru 28176 T 526 526
283 Peru 28177 T 526 526
284 Peru 28178 G 526 526
285 Peru 28179 G 526 526
286 Peru 28180 G A 526 524 Gly96Asp
287 Peru 28181 T 526 526
288 Peru 28182 A 526 526
289 Peru 28183 G 526 526
290 Peru 28184 T 526 526
291 Peru 28185 C 526 526
292 Peru 28186 T 526 526
293 Peru 28187 T 526 526
294 Peru 28188 G 526 526
295 Peru 28189 T 526 526
296 Peru 28190 A 526 526
297 Peru 28191 G 526 526
298 Peru 28192 T 526 526
299 Peru 28193 G 526 526
300 Peru 28194 C 526 526
301 Peru 28195 G 526 526
302 Peru 28196 T 526 526
303 Peru 28197 T 526 526
304 Peru 28198 G 526 526
305 Peru 28199 T C 526 525 Cys102Cys
306 Peru 28200 T 526 526
307 Peru 28201 C 526 526
308 Peru 28202 G 526 526
309 Peru 28203 T 526 526
310 Peru 28204 T 526 526
311 Peru 28205 C 526 526
312 Peru 28206 T 526 526
313 Peru 28207 A 526 526
314 Peru 28208 T 526 526
315 Peru 28209 G 526 526
316 Peru 28210 A 526 526
317 Peru 28211 A 526 526
318 Peru 28212 G 526 526
319 Peru 28213 A 526 526
320 Peru 28214 C 526 526
321 Peru 28215 T 526 526
322 Peru 28216 T 526 526
323 Peru 28217 T 526 526
324 Peru 28218 T 526 526
325 Peru 28219 T 526 526
326 Peru 28220 A 526 526
327 Peru 28221 G 526 526
328 Peru 28222 A 526 526
329 Peru 28223 G 526 526
330 Peru 28224 T 526 526
331 Peru 28225 A 526 526
332 Peru 28226 T 526 526
333 Peru 28227 C 526 526
334 Peru 28228 A 526 526
335 Peru 28229 T 526 526
336 Peru 28230 G T 526 525 Asp113Tyr
337 Peru 28231 A 526 526
338 Peru 28232 C 526 526
339 Peru 28233 G 526 526
340 Peru 28234 T 526 526
341 Peru 28235 T 526 526
342 Peru 28236 C 526 526
343 Peru 28237 G 526 526
344 Peru 28238 T 526 526
345 Peru 28239 G T 526 525 Val116Phe
346 Peru 28240 T 526 526
347 Peru 28241 T 526 526
348 Peru 28242 G T 526 525 Val117Phe
349 Peru 28243 T 526 526
350 Peru 28244 T 526 526
351 Peru 28245 T G 526 523 Leu118Val
352 Peru 28246 T 526 526
353 Peru 28247 A 526 526
354 Peru 28248 G 526 526
355 Peru 28249 A 526 526
356 Peru 28250 T 526 526
357 Peru 28251 T 517 517
358 Peru 28252 T 517 517
359 Peru 28253 C T 517 510 Phe120Phe
360 Peru 28254 A 517 517
361 Peru 28255 T 517 517
362 Peru 28256 C 517 517
363 Peru 28257 T 517 517
364 Peru 28258 A 517 517
365 Peru 28259 A 517 517