National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                 1                      
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q 1   18                                        
R     12               1                        
S     27                                        
T     15                                        
V     36                                        
W     3                   1                    
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 27894 A 56 56
1 Pakistan 27895 T 56 56
2 Pakistan 27896 G 56 56
3 Pakistan 27897 A 56 56
4 Pakistan 27898 A 56 56
5 Pakistan 27899 A 56 56
6 Pakistan 27900 T 56 56
7 Pakistan 27901 T 56 56
8 Pakistan 27902 T 56 56
9 Pakistan 27903 C 56 56
10 Pakistan 27904 T 56 56
11 Pakistan 27905 T 56 56
12 Pakistan 27906 G 56 56
13 Pakistan 27907 T 56 56
14 Pakistan 27908 T 56 56
15 Pakistan 27909 T 56 56
16 Pakistan 27910 T 56 56
17 Pakistan 27911 C 56 56
18 Pakistan 27912 T 56 56
19 Pakistan 27913 T 56 56
20 Pakistan 27914 A 56 56
21 Pakistan 27915 G 56 56
22 Pakistan 27916 G 56 56
23 Pakistan 27917 A 56 56
24 Pakistan 27918 A 56 56
25 Pakistan 27919 T 56 56
26 Pakistan 27920 C 56 56
27 Pakistan 27921 A 56 56
28 Pakistan 27922 T 56 56
29 Pakistan 27923 C 56 56
30 Pakistan 27924 A 56 56
31 Pakistan 27925 C 56 56
32 Pakistan 27926 A 56 56
33 Pakistan 27927 A 56 56
34 Pakistan 27928 C 56 56
35 Pakistan 27929 T 56 56
36 Pakistan 27930 G 56 56
37 Pakistan 27931 T 56 56
38 Pakistan 27932 A 56 56
39 Pakistan 27933 G 56 56
40 Pakistan 27934 C 56 56
41 Pakistan 27935 T 56 56
42 Pakistan 27936 G 56 56
43 Pakistan 27937 C 56 56
44 Pakistan 27938 A 56 56
45 Pakistan 27939 T 56 56
46 Pakistan 27940 T 56 56
47 Pakistan 27941 T 56 56
48 Pakistan 27942 C 56 56
49 Pakistan 27943 A 56 56
50 Pakistan 27944 C 56 56
51 Pakistan 27945 C 56 56
52 Pakistan 27946 A 56 56
53 Pakistan 27947 A 56 56
54 Pakistan 27948 G 56 56
55 Pakistan 27949 A 56 56
56 Pakistan 27950 A 56 56
57 Pakistan 27951 T 56 56
58 Pakistan 27952 G 56 56
59 Pakistan 27953 T 56 56
60 Pakistan 27954 A 56 56
61 Pakistan 27955 G 56 56
62 Pakistan 27956 T 56 56
63 Pakistan 27957 T 56 56
64 Pakistan 27958 T 56 56
65 Pakistan 27959 A 56 56
66 Pakistan 27960 C 56 56
67 Pakistan 27961 A 56 56
68 Pakistan 27962 G 56 56
69 Pakistan 27963 T 56 56
70 Pakistan 27964 C 56 56
71 Pakistan 27965 A 56 56
72 Pakistan 27966 T 56 56
73 Pakistan 27967 G 56 56
74 Pakistan 27968 T 56 56
75 Pakistan 27969 A 56 56
76 Pakistan 27970 C 56 56
77 Pakistan 27971 T 56 56
78 Pakistan 27972 C T 56 54 Gln27*
79 Pakistan 27973 A 56 56
80 Pakistan 27974 A 56 56
81 Pakistan 27975 C 56 56
82 Pakistan 27976 A 56 56
83 Pakistan 27977 T 56 56
84 Pakistan 27978 C 56 56
85 Pakistan 27979 A 56 56
86 Pakistan 27980 A 56 56
87 Pakistan 27981 C 56 56
88 Pakistan 27982 C 56 56
89 Pakistan 27983 A 56 56
90 Pakistan 27984 T 56 56
91 Pakistan 27985 A 56 56
92 Pakistan 27986 T 56 56
93 Pakistan 27987 G 56 56
94 Pakistan 27988 T 56 56
95 Pakistan 27989 A 56 56
96 Pakistan 27990 G 56 56
97 Pakistan 27991 T 56 56
98 Pakistan 27992 T 56 56
99 Pakistan 27993 G 56 56
100 Pakistan 27994 A 56 56
101 Pakistan 27995 T 56 56
102 Pakistan 27996 G 56 56
103 Pakistan 27997 A 56 56
104 Pakistan 27998 C 56 56
105 Pakistan 27999 C 56 56
106 Pakistan 28000 C 56 56
107 Pakistan 28001 G 56 56
108 Pakistan 28002 T 56 56
109 Pakistan 28003 G 56 56
110 Pakistan 28004 T 56 56
111 Pakistan 28005 C 56 56
112 Pakistan 28006 C 56 56
113 Pakistan 28007 T 56 56
114 Pakistan 28008 A 56 56
115 Pakistan 28009 T 56 56
116 Pakistan 28010 T 56 56
117 Pakistan 28011 C 56 56
118 Pakistan 28012 A 56 55
119 Pakistan 28013 C 56 55
120 Pakistan 28014 T 56 56
121 Pakistan 28015 T 56 56
122 Pakistan 28016 C 56 56
123 Pakistan 28017 T 56 56
124 Pakistan 28018 A 56 56
125 Pakistan 28019 T 56 56
126 Pakistan 28020 T 56 56
127 Pakistan 28021 C 56 56
128 Pakistan 28022 T 56 56
129 Pakistan 28023 A 56 56
130 Pakistan 28024 A 56 56
131 Pakistan 28025 A 56 56
132 Pakistan 28026 T 56 56
133 Pakistan 28027 G T 56 54 Trp45Leu
134 Pakistan 28028 G 56 56
135 Pakistan 28029 T 56 56
136 Pakistan 28030 A 56 56
137 Pakistan 28031 T 56 56
138 Pakistan 28032 A 56 56
139 Pakistan 28033 T 56 56
140 Pakistan 28034 T 56 56
141 Pakistan 28035 A 56 56
142 Pakistan 28036 G 56 56
143 Pakistan 28037 A 56 56
144 Pakistan 28038 G 56 56
145 Pakistan 28039 T 56 56
146 Pakistan 28040 A 56 56
147 Pakistan 28041 G 56 56
148 Pakistan 28042 G 56 56
149 Pakistan 28043 A 56 56
150 Pakistan 28044 G 56 56
151 Pakistan 28045 C 56 56
152 Pakistan 28046 T 56 56
153 Pakistan 28047 A 56 56
154 Pakistan 28048 G T 56 54 Arg52Ile
155 Pakistan 28049 A 56 56
156 Pakistan 28050 A 56 56
157 Pakistan 28051 A 56 56
158 Pakistan 28052 A 56 56
159 Pakistan 28053 T 56 56
160 Pakistan 28054 C 56 56
161 Pakistan 28055 A 56 56
162 Pakistan 28056 G 56 56
163 Pakistan 28057 C 56 56
164 Pakistan 28058 A 56 56
165 Pakistan 28059 C 56 56
166 Pakistan 28060 C 56 55
167 Pakistan 28061 T 56 55
168 Pakistan 28062 T 56 55
169 Pakistan 28063 T 56 55
170 Pakistan 28064 A 56 55
171 Pakistan 28065 A 56 55
172 Pakistan 28066 T 56 55
173 Pakistan 28067 T 56 55
174 Pakistan 28068 G 56 56
175 Pakistan 28069 A 56 56
176 Pakistan 28070 A 56 56
177 Pakistan 28071 T 56 56
178 Pakistan 28072 T 56 56
179 Pakistan 28073 G 56 56
180 Pakistan 28074 T 56 56
181 Pakistan 28075 G 56 56
182 Pakistan 28076 C 56 56
183 Pakistan 28077 G 56 56
184 Pakistan 28078 T 56 56
185 Pakistan 28079 G 56 56
186 Pakistan 28080 G 56 56
187 Pakistan 28081 A 56 56
188 Pakistan 28082 T 56 56
189 Pakistan 28083 G 56 56
190 Pakistan 28084 A 56 56
191 Pakistan 28085 G 56 56
192 Pakistan 28086 G 56 56
193 Pakistan 28087 C 56 56
194 Pakistan 28088 T 56 56
195 Pakistan 28089 G 56 56
196 Pakistan 28090 G 56 56
197 Pakistan 28091 T 56 56
198 Pakistan 28092 T 56 56
199 Pakistan 28093 C 56 56
200 Pakistan 28094 T 56 56
201 Pakistan 28095 A 56 56
202 Pakistan 28096 A 56 56
203 Pakistan 28097 A 56 56
204 Pakistan 28098 T 56 56
205 Pakistan 28099 C 56 56
206 Pakistan 28100 A 56 56
207 Pakistan 28101 C 56 56
208 Pakistan 28102 C 56 56
209 Pakistan 28103 C 56 56
210 Pakistan 28104 A 56 56
211 Pakistan 28105 T 56 56
212 Pakistan 28106 T 56 56
213 Pakistan 28107 C 56 56
214 Pakistan 28108 A 56 56
215 Pakistan 28109 G 56 56
216 Pakistan 28110 T 56 56
217 Pakistan 28111 A G 56 54 Tyr73Cys
218 Pakistan 28112 C 56 56
219 Pakistan 28113 A 55 55
220 Pakistan 28114 T 55 55
221 Pakistan 28115 C 55 55
222 Pakistan 28116 G 55 55
223 Pakistan 28117 A 55 55
224 Pakistan 28118 T 55 55
225 Pakistan 28119 A 55 55
226 Pakistan 28120 T 55 55
227 Pakistan 28121 C 55 55
228 Pakistan 28122 G 55 55
229 Pakistan 28123 G 55 55
230 Pakistan 28124 T 55 55
231 Pakistan 28125 A 55 55
232 Pakistan 28126 A 55 55
233 Pakistan 28127 T 55 55
234 Pakistan 28128 T 55 55
235 Pakistan 28129 A 55 55
236 Pakistan 28130 T 55 55
237 Pakistan 28131 A 55 55
238 Pakistan 28132 C 55 55
239 Pakistan 28133 A 55 55
240 Pakistan 28134 G 55 55
241 Pakistan 28135 T 55 55
242 Pakistan 28136 T 55 55
243 Pakistan 28137 T 55 55
244 Pakistan 28138 C 55 55
245 Pakistan 28139 C 55 55
246 Pakistan 28140 T 55 55
247 Pakistan 28141 G 55 55
248 Pakistan 28142 T 55 55
249 Pakistan 28143 T 55 55
250 Pakistan 28144 T C 55 52 Leu84Ser
251 Pakistan 28145 A 55 55
252 Pakistan 28146 C 55 55
253 Pakistan 28147 C 55 55
254 Pakistan 28148 T 55 55
255 Pakistan 28149 T 55 55
256 Pakistan 28150 T 55 55
257 Pakistan 28151 T 55 55
258 Pakistan 28152 A 55 55
259 Pakistan 28153 C 55 55
260 Pakistan 28154 A 55 55
261 Pakistan 28155 A 55 55
262 Pakistan 28156 T 55 55
263 Pakistan 28157 T 55 55
264 Pakistan 28158 A 55 55
265 Pakistan 28159 A 55 55
266 Pakistan 28160 T 55 55
267 Pakistan 28161 T 55 55
268 Pakistan 28162 G 55 55
269 Pakistan 28163 C 55 55
270 Pakistan 28164 C 55 54
271 Pakistan 28165 A 55 54
272 Pakistan 28166 G 55 54
273 Pakistan 28167 G A 55 52 Glu92Lys
274 Pakistan 28168 A 55 54
275 Pakistan 28169 A 55 54
276 Pakistan 28170 C 55 54
277 Pakistan 28171 C 55 54
278 Pakistan 28172 T 55 54
279 Pakistan 28173 A 55 54
280 Pakistan 28174 A 55 54
281 Pakistan 28175 A 55 54
282 Pakistan 28176 T 55 54
283 Pakistan 28177 T 55 54
284 Pakistan 28178 G 55 54
285 Pakistan 28179 G 55 54
286 Pakistan 28180 G 55 54
287 Pakistan 28181 T 55 54
288 Pakistan 28182 A 55 54
289 Pakistan 28183 G 55 54
290 Pakistan 28184 T 55 54
291 Pakistan 28185 C 55 54
292 Pakistan 28186 T 55 54
293 Pakistan 28187 T 55 54
294 Pakistan 28188 G 55 54
295 Pakistan 28189 T 55 54
296 Pakistan 28190 A 55 54
297 Pakistan 28191 G 55 54
298 Pakistan 28192 T 55 54
299 Pakistan 28193 G 55 54
300 Pakistan 28194 C 55 55
301 Pakistan 28195 G 55 55
302 Pakistan 28196 T 55 55
303 Pakistan 28197 T 55 55
304 Pakistan 28198 G 55 55
305 Pakistan 28199 T 55 55
306 Pakistan 28200 T 55 55
307 Pakistan 28201 C 55 55
308 Pakistan 28202 G 55 55
309 Pakistan 28203 T 55 55
310 Pakistan 28204 T 55 55
311 Pakistan 28205 C 55 55
312 Pakistan 28206 T 55 55
313 Pakistan 28207 A 55 55
314 Pakistan 28208 T 55 55
315 Pakistan 28209 G 55 55
316 Pakistan 28210 A 55 55
317 Pakistan 28211 A 55 55
318 Pakistan 28212 G 55 55
319 Pakistan 28213 A 55 55
320 Pakistan 28214 C 55 55
321 Pakistan 28215 T 55 55
322 Pakistan 28216 T 55 55
323 Pakistan 28217 T 55 55
324 Pakistan 28218 T 55 55
325 Pakistan 28219 T 55 55
326 Pakistan 28220 A 55 55
327 Pakistan 28221 G 55 55
328 Pakistan 28222 A 55 55
329 Pakistan 28223 G 55 55
330 Pakistan 28224 T 56 56
331 Pakistan 28225 A 56 56
332 Pakistan 28226 T 56 56
333 Pakistan 28227 C 56 56
334 Pakistan 28228 A 56 56
335 Pakistan 28229 T 56 56
336 Pakistan 28230 G 56 56
337 Pakistan 28231 A 56 56
338 Pakistan 28232 C 56 56
339 Pakistan 28233 G 56 56
340 Pakistan 28234 T 56 56
341 Pakistan 28235 T 56 56
342 Pakistan 28236 C 56 56
343 Pakistan 28237 G 56 56
344 Pakistan 28238 T 56 56
345 Pakistan 28239 G 56 56
346 Pakistan 28240 T 56 56
347 Pakistan 28241 T 56 56
348 Pakistan 28242 G 56 56
349 Pakistan 28243 T 56 56
350 Pakistan 28244 T 56 56
351 Pakistan 28245 T 56 56
352 Pakistan 28246 T 56 56
353 Pakistan 28247 A 56 56
354 Pakistan 28248 G 56 56
355 Pakistan 28249 A 56 56
356 Pakistan 28250 T 56 56
357 Pakistan 28251 T 56 56
358 Pakistan 28252 T 56 56
359 Pakistan 28253 C T 56 54 Phe120Phe
360 Pakistan 28254 A 56 56
361 Pakistan 28255 T 56 56
362 Pakistan 28256 C 56 56
363 Pakistan 28257 T 56 56
364 Pakistan 28258 A 56 56
365 Pakistan 28259 A 56 56