National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15     1                         3   1    
C     21                               1        
D     22 1   1                                 1
E 2   18 1   1 1                                
F     24         3                              
G     15                             1     1    
H     12             1                         1
I     30               1   1             1      
K 1   15                 2                      
L     30         1                              
M     3                                        
N     6                                        
P     21                   3           1        
Q 1   18             1               1          
R     12               1                        
S     27         1         2           1        
T     15               3                 1      
V     36                   1               1    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 27894 A 1276 1276
1 Norway 27895 T 1276 1276
2 Norway 27896 G 1276 1276
3 Norway 27897 A 1276 1276
4 Norway 27898 A 1276 1276
5 Norway 27899 A 1276 1276
6 Norway 27900 T 1276 1276
7 Norway 27901 T 1276 1276
8 Norway 27902 T 1276 1276
9 Norway 27903 C 1276 1276
10 Norway 27904 T 1276 1276
11 Norway 27905 T 1276 1276
12 Norway 27906 G 1276 1276
13 Norway 27907 T 1276 1276
14 Norway 27908 T 1276 1276
15 Norway 27909 T 1276 1276
16 Norway 27910 T 1276 1276
17 Norway 27911 C T 1276 1271 Phe6Phe
18 Norway 27912 T 1276 1276
19 Norway 27913 T 1276 1276
20 Norway 27914 A 1276 1276
21 Norway 27915 G 1276 1276
22 Norway 27916 G 1276 1276
23 Norway 27917 A 1276 1276
24 Norway 27918 A 1276 1276
25 Norway 27919 T 1276 1276
26 Norway 27920 C T 1276 1275 Ile9Ile
27 Norway 27921 A 1276 1276
28 Norway 27922 T C 1276 1275 Ile10Thr
29 Norway 27923 C 1276 1276
30 Norway 27924 A 1276 1276
31 Norway 27925 C T 1276 1274 Thr11Ile
32 Norway 27926 A 1276 1276
33 Norway 27927 A 1276 1276
34 Norway 27928 C 1276 1276
35 Norway 27929 T 1276 1276
36 Norway 27930 G 1276 1276
37 Norway 27931 T 1276 1276
38 Norway 27932 A 1276 1276
39 Norway 27933 G T 1276 1275 Ala14Ser
40 Norway 27934 C 1276 1276
41 Norway 27935 T 1276 1276
42 Norway 27936 G 1276 1276
43 Norway 27937 C 1276 1276
44 Norway 27938 A 1276 1276
45 Norway 27939 T 1276 1276
46 Norway 27940 T 1276 1276
47 Norway 27941 T 1276 1276
48 Norway 27942 C T 1276 1272 His17Tyr
49 Norway 27943 A 1276 1276
50 Norway 27944 C T 1276 1174 His17His
51 Norway 27945 C 1276 1276
52 Norway 27946 A 1276 1276
53 Norway 27947 A 1276 1276
54 Norway 27948 G 1276 1276
55 Norway 27949 A 1276 1276
56 Norway 27950 A 1276 1276
57 Norway 27951 T 1276 1276
58 Norway 27952 G 1276 1276
59 Norway 27953 T 1276 1276
60 Norway 27954 A 1276 1276
61 Norway 27955 G 1276 1276
62 Norway 27956 T 1276 1276
63 Norway 27957 T 1276 1276
64 Norway 27958 T 1276 1276
65 Norway 27959 A 1276 1276
66 Norway 27960 C 1276 1276
67 Norway 27961 A 1276 1276
68 Norway 27962 G 1276 1276
69 Norway 27963 T 1276 1276
70 Norway 27964 C T 1276 1271 Ser24Leu
71 Norway 27965 A 1276 1276
72 Norway 27966 T 1276 1276
73 Norway 27967 G C 1276 1275 Cys25Ser
74 Norway 27968 T 1276 1276
75 Norway 27969 A 1276 1276
76 Norway 27970 C T 1276 1275 Thr26Ile
77 Norway 27971 T 1276 1276
78 Norway 27972 C T 1276 1246 Gln27*
79 Norway 27973 A G 1276 1275 Gln27Arg
80 Norway 27974 A 1276 1276
81 Norway 27975 C 1276 1276
82 Norway 27976 A 1276 1276
83 Norway 27977 T 1276 1276
84 Norway 27978 C 1276 1276
85 Norway 27979 A 1276 1276
86 Norway 27980 A 1276 1276
87 Norway 27981 C 1276 1276
88 Norway 27982 C T 1276 1275 Pro30Leu
89 Norway 27983 A 1276 1276
90 Norway 27984 T 1276 1276
91 Norway 27985 A 1276 1276
92 Norway 27986 T 1276 1276
93 Norway 27987 G 1276 1276
94 Norway 27988 T 1276 1276
95 Norway 27989 A 1276 1276
96 Norway 27990 G 1276 1276
97 Norway 27991 T 1276 1276
98 Norway 27992 T 1276 1276
99 Norway 27993 G 1276 1276
100 Norway 27994 A C 1276 1275 Asp34Ala
101 Norway 27995 T 1276 1276
102 Norway 27996 G 1276 1276
103 Norway 27997 A 1276 1276
104 Norway 27998 C 1276 1276
105 Norway 27999 C 1276 1276
106 Norway 28000 C 1276 1276
107 Norway 28001 G 1276 1276
108 Norway 28002 T 1276 1276
109 Norway 28003 G 1276 1276
110 Norway 28004 T 1276 1276
111 Norway 28005 C 1276 1276
112 Norway 28006 C T 1276 1274 Pro38Leu
113 Norway 28007 T 1276 1276
114 Norway 28008 A 1276 1276
115 Norway 28009 T 1276 1276
116 Norway 28010 T 1276 1276
117 Norway 28011 C 1276 1276
118 Norway 28012 A 1276 1276
119 Norway 28013 C 1276 1276
120 Norway 28014 T 1275 1275
121 Norway 28015 T 1275 1275
122 Norway 28016 C 1275 1275
123 Norway 28017 T 1275 1275
124 Norway 28018 A 1275 1275
125 Norway 28019 T 1275 1275
126 Norway 28020 T 1275 1275
127 Norway 28021 C 1275 1275
128 Norway 28022 T 1275 1275
129 Norway 28023 A 1275 1275
130 Norway 28024 A 1275 1275
131 Norway 28025 A 1275 1275
132 Norway 28026 T 1275 1275
133 Norway 28027 G 1275 1275
134 Norway 28028 G 1275 1275
135 Norway 28029 T 1275 1275
136 Norway 28030 A 1275 1275
137 Norway 28031 T 1275 1275
138 Norway 28032 A 1275 1275
139 Norway 28033 T 1275 1275
140 Norway 28034 T 1275 1275
141 Norway 28035 A 1275 1275
142 Norway 28036 G 1275 1275
143 Norway 28037 A 1275 1275
144 Norway 28038 G 1275 1275
145 Norway 28039 T 1275 1275
146 Norway 28040 A 1275 1275
147 Norway 28041 G A 1275 1274 Gly50Arg
148 Norway 28042 G 1275 1275
149 Norway 28043 A 1275 1275
150 Norway 28044 G T 1275 1270 Ala51Ser
151 Norway 28045 C T 1275 1207 Ala51Val
152 Norway 28046 T 1275 1275
153 Norway 28047 A 1275 1275
154 Norway 28048 G T 1275 1243 Arg52Ile
155 Norway 28049 A 1275 1275
156 Norway 28050 A 1275 1275
157 Norway 28051 A 1275 1275
158 Norway 28052 A G 1275 1274 Lys53Lys
159 Norway 28053 T 1275 1275
160 Norway 28054 C T 1275 1274 Ser54Leu
161 Norway 28055 A 1275 1275
162 Norway 28056 G 1275 1275
163 Norway 28057 C 1275 1275
164 Norway 28058 A 1275 1275
165 Norway 28059 C 1275 1275
166 Norway 28060 C 1275 1275
167 Norway 28061 T 1275 1275
168 Norway 28062 T 1275 1275
169 Norway 28063 T 1275 1275
170 Norway 28064 A 1275 1275
171 Norway 28065 A 1275 1275
172 Norway 28066 T 1275 1275
173 Norway 28067 T 1275 1275
174 Norway 28068 G T 1275 1272 Glu59*
175 Norway 28069 A C 1275 1274 Glu59Ala
176 Norway 28070 A 1275 1275
177 Norway 28071 T 1275 1275
178 Norway 28072 T 1275 1275
179 Norway 28073 G 1275 1275
180 Norway 28074 T 1274 1274
181 Norway 28075 G 1274 1274
182 Norway 28076 C 1274 1274
183 Norway 28077 G T 1274 1271 Val62Leu
184 Norway 28078 T 1274 1274
185 Norway 28079 G T 1274 1273 Val62Val
186 Norway 28080 G 1274 1274
187 Norway 28081 A 1274 1274
188 Norway 28082 T 1274 1274
189 Norway 28083 G T 1274 1273 Glu64*
190 Norway 28084 A 1274 1274
191 Norway 28085 G T 1274 1273 Glu64Asp
192 Norway 28086 G T 1274 1272 Ala65Ser
193 Norway 28087 C A 1274 1271 Ala65Asp
194 Norway 28088 T 1274 1274
195 Norway 28089 G 1274 1274
196 Norway 28090 G 1274 1274
197 Norway 28091 T 1274 1274
198 Norway 28092 T 1274 1274
199 Norway 28093 C T 1274 1267 Ser67Phe
200 Norway 28094 T 1274 1274
201 Norway 28095 A T 1274 1270 Lys68*
202 Norway 28096 A 1274 1274
203 Norway 28097 A G 1274 1273 Lys68Lys
204 Norway 28098 T 1274 1274
205 Norway 28099 C 1274 1274
206 Norway 28100 A 1274 1274
207 Norway 28101 C 1274 1274
208 Norway 28102 C T 1274 1272 Pro70Leu
209 Norway 28103 C 1274 1274
210 Norway 28104 A 1274 1274
211 Norway 28105 T 1276 1276
212 Norway 28106 T 1276 1276
213 Norway 28107 C 1276 1276
214 Norway 28108 A 1276 1276
215 Norway 28109 G T 1276 1273 Gln72His
216 Norway 28110 T 1276 1276
217 Norway 28111 A G 1276 1246 Tyr73Cys
218 Norway 28112 C 1276 1276
219 Norway 28113 A 1276 1276
220 Norway 28114 T 1276 1276
221 Norway 28115 C 1276 1276
222 Norway 28116 G 1276 1276
223 Norway 28117 A 1276 1276
224 Norway 28118 T 1276 1276
225 Norway 28119 A 1276 1276
226 Norway 28120 T 1276 1276
227 Norway 28121 C 1276 1276
228 Norway 28122 G 1276 1276
229 Norway 28123 G 1276 1276
230 Norway 28124 T 1276 1276
231 Norway 28125 A 1276 1276
232 Norway 28126 A 1276 1276
233 Norway 28127 T 1276 1276
234 Norway 28128 T 1276 1276
235 Norway 28129 A 1276 1276
236 Norway 28130 T 1276 1276
237 Norway 28131 A 1276 1276
238 Norway 28132 C 1276 1276
239 Norway 28133 A T 1276 1274 Thr80Thr
240 Norway 28134 G 1278 1278
241 Norway 28135 T 1278 1278
242 Norway 28136 T 1278 1278
243 Norway 28137 T 1278 1278
244 Norway 28138 C 1278 1278
245 Norway 28139 C 1278 1278
246 Norway 28140 T 1278 1278
247 Norway 28141 G 1278 1278
248 Norway 28142 T 1278 1278
249 Norway 28143 T 1278 1278
250 Norway 28144 T 1278 1278
251 Norway 28145 A 1278 1278
252 Norway 28146 C 1277 1277
253 Norway 28147 C 1277 1277
254 Norway 28148 T 1277 1277
255 Norway 28149 T 1277 1277
256 Norway 28150 T 1277 1277
257 Norway 28151 T C 1277 1276 Phe86Phe
258 Norway 28152 A 1277 1277
259 Norway 28153 C T 1277 1276 Thr87Ile
260 Norway 28154 A 1277 1277
261 Norway 28155 A 1277 1277
262 Norway 28156 T 1277 1277
263 Norway 28157 T 1277 1277
264 Norway 28158 A 1277 1277
265 Norway 28159 A 1277 1277
266 Norway 28160 T 1277 1277
267 Norway 28161 T 1277 1277
268 Norway 28162 G 1277 1277
269 Norway 28163 C 1277 1277
270 Norway 28164 C 1277 1277
271 Norway 28165 A 1277 1277
272 Norway 28166 G 1277 1277
273 Norway 28167 G 1277 1277
274 Norway 28168 A 1277 1277
275 Norway 28169 A G 1277 1274 Glu92Glu
276 Norway 28170 C T 1277 1276 Pro93Ser
277 Norway 28171 C 1277 1277
278 Norway 28172 T 1277 1277
279 Norway 28173 A 1277 1277
280 Norway 28174 A 1277 1277
281 Norway 28175 A 1277 1277
282 Norway 28176 T 1277 1277
283 Norway 28177 T 1277 1277
284 Norway 28178 G T 1277 1272 Leu95Phe
285 Norway 28179 G 1277 1277
286 Norway 28180 G T 1277 1272 Gly96Val
287 Norway 28181 T 1277 1277
288 Norway 28182 A 1277 1277
289 Norway 28183 G 1277 1277
290 Norway 28184 T 1277 1277
291 Norway 28185 C 1277 1277
292 Norway 28186 T 1277 1277
293 Norway 28187 T 1277 1277
294 Norway 28188 G 1277 1277
295 Norway 28189 T 1277 1277
296 Norway 28190 A 1277 1277
297 Norway 28191 G 1277 1277
298 Norway 28192 T 1277 1277
299 Norway 28193 G 1277 1277
300 Norway 28194 C 1277 1277
301 Norway 28195 G 1277 1277
302 Norway 28196 T 1277 1277
303 Norway 28197 T 1277 1277
304 Norway 28198 G 1277 1277
305 Norway 28199 T 1277 1277
306 Norway 28200 T 1277 1277
307 Norway 28201 C 1277 1277
308 Norway 28202 G A 1277 1275 Ser103Ser
309 Norway 28203 T 1277 1277
310 Norway 28204 T 1277 1277
311 Norway 28205 C 1277 1277
312 Norway 28206 T 1277 1277
313 Norway 28207 A 1277 1277
314 Norway 28208 T 1277 1277
315 Norway 28209 G 1277 1277
316 Norway 28210 A 1277 1277
317 Norway 28211 A 1277 1277
318 Norway 28212 G T 1277 1271 Asp107Tyr
319 Norway 28213 A 1277 1277
320 Norway 28214 C 1277 1277
321 Norway 28215 T 1277 1277
322 Norway 28216 T 1277 1277
323 Norway 28217 T 1277 1277
324 Norway 28218 T 1277 1277
325 Norway 28219 T 1277 1277
326 Norway 28220 A 1277 1277
327 Norway 28221 G 1277 1277
328 Norway 28222 A 1277 1277
329 Norway 28223 G 1277 1277
330 Norway 28224 T 1277 1277
331 Norway 28225 A 1277 1277
332 Norway 28226 T 1277 1277
333 Norway 28227 C 1277 1277
334 Norway 28228 A 1277 1277
335 Norway 28229 T 1277 1277
336 Norway 28230 G 1277 1277
337 Norway 28231 A 1277 1277
338 Norway 28232 C T 1277 1274 Asp113Asp
339 Norway 28233 G 1277 1277
340 Norway 28234 T 1277 1277
341 Norway 28235 T 1277 1277
342 Norway 28236 C 1277 1277
343 Norway 28237 G 1277 1277
344 Norway 28238 T 1277 1277
345 Norway 28239 G 1277 1277
346 Norway 28240 T 1277 1277
347 Norway 28241 T 1277 1277
348 Norway 28242 G 1277 1277
349 Norway 28243 T 1277 1277
350 Norway 28244 T 1277 1277
351 Norway 28245 T 1277 1277
352 Norway 28246 T 1277 1277
353 Norway 28247 A 1277 1277
354 Norway 28248 G 1277 1277
355 Norway 28249 A 1277 1277
356 Norway 28250 T 1277 1277
357 Norway 28251 T 1274 1274
358 Norway 28252 T 1274 1274
359 Norway 28253 C T 1274 1228 Phe120Phe
360 Norway 28254 A C 1274 1273 Ile121Leu
361 Norway 28255 T 1274 1274
362 Norway 28256 C 1274 1274
363 Norway 28257 T 1274 1274
364 Norway 28258 A 1274 1274
365 Norway 28259 A 1274 1274