National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   2    
C     21                                        
D     22                                        
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                         1              
T     15               1                        
V     36                   1                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 North_Macedonia 27894 A 82 82
1 North_Macedonia 27895 T 82 82
2 North_Macedonia 27896 G 82 82
3 North_Macedonia 27897 A 82 82
4 North_Macedonia 27898 A 82 82
5 North_Macedonia 27899 A 82 82
6 North_Macedonia 27900 T 82 82
7 North_Macedonia 27901 T 82 82
8 North_Macedonia 27902 T 82 82
9 North_Macedonia 27903 C 82 82
10 North_Macedonia 27904 T 82 82
11 North_Macedonia 27905 T 82 82
12 North_Macedonia 27906 G 82 82
13 North_Macedonia 27907 T 82 82
14 North_Macedonia 27908 T 82 82
15 North_Macedonia 27909 T 82 82
16 North_Macedonia 27910 T 82 82
17 North_Macedonia 27911 C 82 82
18 North_Macedonia 27912 T 82 82
19 North_Macedonia 27913 T 82 82
20 North_Macedonia 27914 A 82 82
21 North_Macedonia 27915 G 82 82
22 North_Macedonia 27916 G 82 82
23 North_Macedonia 27917 A 82 82
24 North_Macedonia 27918 A 82 82
25 North_Macedonia 27919 T 82 82
26 North_Macedonia 27920 C 82 82
27 North_Macedonia 27921 A 82 82
28 North_Macedonia 27922 T 82 82
29 North_Macedonia 27923 C 82 82
30 North_Macedonia 27924 A 82 82
31 North_Macedonia 27925 C 82 82
32 North_Macedonia 27926 A 82 82
33 North_Macedonia 27927 A 82 82
34 North_Macedonia 27928 C 82 82
35 North_Macedonia 27929 T 82 82
36 North_Macedonia 27930 G 82 82
37 North_Macedonia 27931 T 82 82
38 North_Macedonia 27932 A 82 82
39 North_Macedonia 27933 G 82 82
40 North_Macedonia 27934 C 82 82
41 North_Macedonia 27935 T 82 82
42 North_Macedonia 27936 G 82 82
43 North_Macedonia 27937 C 82 82
44 North_Macedonia 27938 A 82 82
45 North_Macedonia 27939 T 82 82
46 North_Macedonia 27940 T 82 82
47 North_Macedonia 27941 T 82 82
48 North_Macedonia 27942 C 82 82
49 North_Macedonia 27943 A 82 82
50 North_Macedonia 27944 C 82 82
51 North_Macedonia 27945 C 82 82
52 North_Macedonia 27946 A 82 82
53 North_Macedonia 27947 A 82 82
54 North_Macedonia 27948 G 82 82
55 North_Macedonia 27949 A 82 82
56 North_Macedonia 27950 A 82 82
57 North_Macedonia 27951 T 82 82
58 North_Macedonia 27952 G 82 82
59 North_Macedonia 27953 T 82 82
60 North_Macedonia 27954 A 82 82
61 North_Macedonia 27955 G 82 82
62 North_Macedonia 27956 T 82 82
63 North_Macedonia 27957 T 82 82
64 North_Macedonia 27958 T 82 82
65 North_Macedonia 27959 A 82 82
66 North_Macedonia 27960 C 82 82
67 North_Macedonia 27961 A 82 82
68 North_Macedonia 27962 G 82 82
69 North_Macedonia 27963 T 82 82
70 North_Macedonia 27964 C 82 82
71 North_Macedonia 27965 A 82 82
72 North_Macedonia 27966 T 82 82
73 North_Macedonia 27967 G 82 82
74 North_Macedonia 27968 T 82 82
75 North_Macedonia 27969 A 82 82
76 North_Macedonia 27970 C 82 82
77 North_Macedonia 27971 T 82 82
78 North_Macedonia 27972 C 82 82
79 North_Macedonia 27973 A 82 82
80 North_Macedonia 27974 A 82 82
81 North_Macedonia 27975 C 82 82
82 North_Macedonia 27976 A 82 82
83 North_Macedonia 27977 T 82 82
84 North_Macedonia 27978 C 82 82
85 North_Macedonia 27979 A 82 82
86 North_Macedonia 27980 A 82 82
87 North_Macedonia 27981 C 82 82
88 North_Macedonia 27982 C 82 82
89 North_Macedonia 27983 A 82 82
90 North_Macedonia 27984 T 82 82
91 North_Macedonia 27985 A 82 82
92 North_Macedonia 27986 T 82 82
93 North_Macedonia 27987 G 82 82
94 North_Macedonia 27988 T 82 82
95 North_Macedonia 27989 A 82 82
96 North_Macedonia 27990 G 82 82
97 North_Macedonia 27991 T 82 82
98 North_Macedonia 27992 T 82 82
99 North_Macedonia 27993 G 82 82
100 North_Macedonia 27994 A 82 82
101 North_Macedonia 27995 T 82 82
102 North_Macedonia 27996 G 82 82
103 North_Macedonia 27997 A 82 82
104 North_Macedonia 27998 C 82 82
105 North_Macedonia 27999 C 82 82
106 North_Macedonia 28000 C 82 82
107 North_Macedonia 28001 G 82 82
108 North_Macedonia 28002 T 82 82
109 North_Macedonia 28003 G 82 82
110 North_Macedonia 28004 T 82 82
111 North_Macedonia 28005 C 82 82
112 North_Macedonia 28006 C 82 82
113 North_Macedonia 28007 T 82 82
114 North_Macedonia 28008 A 82 82
115 North_Macedonia 28009 T 82 82
116 North_Macedonia 28010 T 82 82
117 North_Macedonia 28011 C 82 82
118 North_Macedonia 28012 A 82 82
119 North_Macedonia 28013 C 82 82
120 North_Macedonia 28014 T 82 82
121 North_Macedonia 28015 T 82 82
122 North_Macedonia 28016 C 82 82
123 North_Macedonia 28017 T 82 82
124 North_Macedonia 28018 A 82 82
125 North_Macedonia 28019 T 82 82
126 North_Macedonia 28020 T 82 82
127 North_Macedonia 28021 C 82 82
128 North_Macedonia 28022 T 82 82
129 North_Macedonia 28023 A 82 82
130 North_Macedonia 28024 A 82 82
131 North_Macedonia 28025 A 82 82
132 North_Macedonia 28026 T 82 82
133 North_Macedonia 28027 G 82 82
134 North_Macedonia 28028 G 82 82
135 North_Macedonia 28029 T 82 82
136 North_Macedonia 28030 A 82 82
137 North_Macedonia 28031 T 82 82
138 North_Macedonia 28032 A 82 82
139 North_Macedonia 28033 T 82 82
140 North_Macedonia 28034 T 82 82
141 North_Macedonia 28035 A 82 82
142 North_Macedonia 28036 G 82 82
143 North_Macedonia 28037 A 82 82
144 North_Macedonia 28038 G 82 82
145 North_Macedonia 28039 T 82 82
146 North_Macedonia 28040 A 82 82
147 North_Macedonia 28041 G 82 82
148 North_Macedonia 28042 G 82 82
149 North_Macedonia 28043 A 82 82
150 North_Macedonia 28044 G 82 82
151 North_Macedonia 28045 C 82 82
152 North_Macedonia 28046 T 82 82
153 North_Macedonia 28047 A 82 82
154 North_Macedonia 28048 G 82 82
155 North_Macedonia 28049 A 82 82
156 North_Macedonia 28050 A 82 82
157 North_Macedonia 28051 A 82 82
158 North_Macedonia 28052 A 82 82
159 North_Macedonia 28053 T 82 82
160 North_Macedonia 28054 C 82 82
161 North_Macedonia 28055 A 82 82
162 North_Macedonia 28056 G 82 82
163 North_Macedonia 28057 C T 82 81 Ala55Val
164 North_Macedonia 28058 A 82 82
165 North_Macedonia 28059 C 82 82
166 North_Macedonia 28060 C 82 82
167 North_Macedonia 28061 T 82 82
168 North_Macedonia 28062 T 82 82
169 North_Macedonia 28063 T 82 82
170 North_Macedonia 28064 A 82 82
171 North_Macedonia 28065 A 82 82
172 North_Macedonia 28066 T 82 82
173 North_Macedonia 28067 T 82 82
174 North_Macedonia 28068 G 82 82
175 North_Macedonia 28069 A 82 82
176 North_Macedonia 28070 A 82 82
177 North_Macedonia 28071 T 82 82
178 North_Macedonia 28072 T 82 82
179 North_Macedonia 28073 G 82 82
180 North_Macedonia 28074 T 82 82
181 North_Macedonia 28075 G 82 82
182 North_Macedonia 28076 C 82 82
183 North_Macedonia 28077 G T 82 81 Val62Leu
184 North_Macedonia 28078 T 82 82
185 North_Macedonia 28079 G 82 82
186 North_Macedonia 28080 G 82 82
187 North_Macedonia 28081 A 82 82
188 North_Macedonia 28082 T 82 82
189 North_Macedonia 28083 G 82 82
190 North_Macedonia 28084 A 82 82
191 North_Macedonia 28085 G 82 82
192 North_Macedonia 28086 G 82 82
193 North_Macedonia 28087 C T 82 81 Ala65Val
194 North_Macedonia 28088 T 82 82
195 North_Macedonia 28089 G 82 82
196 North_Macedonia 28090 G 82 82
197 North_Macedonia 28091 T 82 82
198 North_Macedonia 28092 T 82 82
199 North_Macedonia 28093 C 82 82
200 North_Macedonia 28094 T 82 82
201 North_Macedonia 28095 A 82 82
202 North_Macedonia 28096 A 82 82
203 North_Macedonia 28097 A 82 82
204 North_Macedonia 28098 T C 82 81 Ser69Pro
205 North_Macedonia 28099 C 82 82
206 North_Macedonia 28100 A 82 82
207 North_Macedonia 28101 C 82 82
208 North_Macedonia 28102 C 82 82
209 North_Macedonia 28103 C 82 82
210 North_Macedonia 28104 A 82 82
211 North_Macedonia 28105 T 82 82
212 North_Macedonia 28106 T 82 82
213 North_Macedonia 28107 C 82 82
214 North_Macedonia 28108 A 82 82
215 North_Macedonia 28109 G 82 82
216 North_Macedonia 28110 T 82 82
217 North_Macedonia 28111 A 82 82
218 North_Macedonia 28112 C 82 82
219 North_Macedonia 28113 A 82 82
220 North_Macedonia 28114 T 82 82
221 North_Macedonia 28115 C 82 82
222 North_Macedonia 28116 G 82 82
223 North_Macedonia 28117 A 82 82
224 North_Macedonia 28118 T 82 82
225 North_Macedonia 28119 A 82 82
226 North_Macedonia 28120 T 82 82
227 North_Macedonia 28121 C 82 82
228 North_Macedonia 28122 G 82 82
229 North_Macedonia 28123 G 82 82
230 North_Macedonia 28124 T 82 82
231 North_Macedonia 28125 A 82 82
232 North_Macedonia 28126 A 82 82
233 North_Macedonia 28127 T 82 82
234 North_Macedonia 28128 T 82 82
235 North_Macedonia 28129 A 82 82
236 North_Macedonia 28130 T 82 82
237 North_Macedonia 28131 A 82 82
238 North_Macedonia 28132 C 82 82
239 North_Macedonia 28133 A 82 82
240 North_Macedonia 28134 G 82 82
241 North_Macedonia 28135 T 82 82
242 North_Macedonia 28136 T 82 82
243 North_Macedonia 28137 T 82 82
244 North_Macedonia 28138 C 82 82
245 North_Macedonia 28139 C 82 82
246 North_Macedonia 28140 T 82 82
247 North_Macedonia 28141 G 82 82
248 North_Macedonia 28142 T 82 82
249 North_Macedonia 28143 T 82 82
250 North_Macedonia 28144 T 82 82
251 North_Macedonia 28145 A 82 82
252 North_Macedonia 28146 C 82 82
253 North_Macedonia 28147 C 82 82
254 North_Macedonia 28148 T 82 82
255 North_Macedonia 28149 T 82 82
256 North_Macedonia 28150 T 82 82
257 North_Macedonia 28151 T 82 82
258 North_Macedonia 28152 A 82 82
259 North_Macedonia 28153 C T 82 74 Thr87Ile
260 North_Macedonia 28154 A 82 82
261 North_Macedonia 28155 A 82 82
262 North_Macedonia 28156 T 82 82
263 North_Macedonia 28157 T 82 82
264 North_Macedonia 28158 A 82 82
265 North_Macedonia 28159 A 82 82
266 North_Macedonia 28160 T 82 82
267 North_Macedonia 28161 T 82 82
268 North_Macedonia 28162 G 82 82
269 North_Macedonia 28163 C 82 82
270 North_Macedonia 28164 C 82 82
271 North_Macedonia 28165 A 82 82
272 North_Macedonia 28166 G 82 82
273 North_Macedonia 28167 G 82 82
274 North_Macedonia 28168 A 82 82
275 North_Macedonia 28169 A 82 82
276 North_Macedonia 28170 C 82 82
277 North_Macedonia 28171 C 82 82
278 North_Macedonia 28172 T 82 82
279 North_Macedonia 28173 A 82 82
280 North_Macedonia 28174 A 82 82
281 North_Macedonia 28175 A 82 82
282 North_Macedonia 28176 T 82 82
283 North_Macedonia 28177 T 82 82
284 North_Macedonia 28178 G 82 82
285 North_Macedonia 28179 G 82 82
286 North_Macedonia 28180 G 82 82
287 North_Macedonia 28181 T 82 82
288 North_Macedonia 28182 A 82 82
289 North_Macedonia 28183 G 82 82
290 North_Macedonia 28184 T 82 82
291 North_Macedonia 28185 C 82 82
292 North_Macedonia 28186 T 82 82
293 North_Macedonia 28187 T 82 82
294 North_Macedonia 28188 G 82 82
295 North_Macedonia 28189 T 82 82
296 North_Macedonia 28190 A 82 82
297 North_Macedonia 28191 G 82 82
298 North_Macedonia 28192 T 82 82
299 North_Macedonia 28193 G 82 82
300 North_Macedonia 28194 C 82 82
301 North_Macedonia 28195 G 82 82
302 North_Macedonia 28196 T 82 82
303 North_Macedonia 28197 T 82 82
304 North_Macedonia 28198 G 82 82
305 North_Macedonia 28199 T 82 82
306 North_Macedonia 28200 T 82 82
307 North_Macedonia 28201 C 82 82
308 North_Macedonia 28202 G 82 82
309 North_Macedonia 28203 T 82 82
310 North_Macedonia 28204 T 82 82
311 North_Macedonia 28205 C 82 82
312 North_Macedonia 28206 T 82 82
313 North_Macedonia 28207 A 82 82
314 North_Macedonia 28208 T 82 82
315 North_Macedonia 28209 G 82 82
316 North_Macedonia 28210 A 82 82
317 North_Macedonia 28211 A 82 82
318 North_Macedonia 28212 G 82 82
319 North_Macedonia 28213 A 82 82
320 North_Macedonia 28214 C 82 82
321 North_Macedonia 28215 T 82 82
322 North_Macedonia 28216 T 82 82
323 North_Macedonia 28217 T 82 82
324 North_Macedonia 28218 T 82 82
325 North_Macedonia 28219 T 82 82
326 North_Macedonia 28220 A 82 82
327 North_Macedonia 28221 G 82 82
328 North_Macedonia 28222 A 82 82
329 North_Macedonia 28223 G 82 82
330 North_Macedonia 28224 T 82 82
331 North_Macedonia 28225 A 82 82
332 North_Macedonia 28226 T 82 82
333 North_Macedonia 28227 C 82 82
334 North_Macedonia 28228 A 82 82
335 North_Macedonia 28229 T 82 82
336 North_Macedonia 28230 G 82 82
337 North_Macedonia 28231 A 82 82
338 North_Macedonia 28232 C 82 82
339 North_Macedonia 28233 G 82 82
340 North_Macedonia 28234 T 82 82
341 North_Macedonia 28235 T 82 82
342 North_Macedonia 28236 C 82 82
343 North_Macedonia 28237 G 82 82
344 North_Macedonia 28238 T 82 82
345 North_Macedonia 28239 G 82 82
346 North_Macedonia 28240 T 82 82
347 North_Macedonia 28241 T 82 82
348 North_Macedonia 28242 G 82 82
349 North_Macedonia 28243 T 82 82
350 North_Macedonia 28244 T 82 82
351 North_Macedonia 28245 T 82 82
352 North_Macedonia 28246 T 82 82
353 North_Macedonia 28247 A 82 82
354 North_Macedonia 28248 G 82 82
355 North_Macedonia 28249 A 82 82
356 North_Macedonia 28250 T 82 82
357 North_Macedonia 28251 T 82 82
358 North_Macedonia 28252 T 82 82
359 North_Macedonia 28253 C T 82 80 Phe120Phe
360 North_Macedonia 28254 A 82 82
361 North_Macedonia 28255 T 82 82
362 North_Macedonia 28256 C 82 82
363 North_Macedonia 28257 T 82 82
364 North_Macedonia 28258 A 82 82
365 North_Macedonia 28259 A 82 82