National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30               1                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 27894 A 15 15
1 Nepal 27895 T 15 15
2 Nepal 27896 G 15 15
3 Nepal 27897 A 15 15
4 Nepal 27898 A 15 15
5 Nepal 27899 A 15 15
6 Nepal 27900 T 15 15
7 Nepal 27901 T 15 15
8 Nepal 27902 T 15 15
9 Nepal 27903 C 15 15
10 Nepal 27904 T 15 15
11 Nepal 27905 T 15 15
12 Nepal 27906 G 15 15
13 Nepal 27907 T 15 15
14 Nepal 27908 T 15 15
15 Nepal 27909 T 15 15
16 Nepal 27910 T 15 15
17 Nepal 27911 C 15 15
18 Nepal 27912 T 15 15
19 Nepal 27913 T 15 15
20 Nepal 27914 A 15 15
21 Nepal 27915 G 15 15
22 Nepal 27916 G 15 15
23 Nepal 27917 A 15 15
24 Nepal 27918 A 15 15
25 Nepal 27919 T 15 15
26 Nepal 27920 C 15 15
27 Nepal 27921 A 15 15
28 Nepal 27922 T 15 15
29 Nepal 27923 C 15 15
30 Nepal 27924 A 15 15
31 Nepal 27925 C 15 15
32 Nepal 27926 A 15 15
33 Nepal 27927 A 15 15
34 Nepal 27928 C 15 15
35 Nepal 27929 T 15 15
36 Nepal 27930 G 15 15
37 Nepal 27931 T 15 15
38 Nepal 27932 A 15 15
39 Nepal 27933 G 15 15
40 Nepal 27934 C 15 15
41 Nepal 27935 T 15 15
42 Nepal 27936 G 15 15
43 Nepal 27937 C 15 15
44 Nepal 27938 A 15 15
45 Nepal 27939 T 15 15
46 Nepal 27940 T 15 15
47 Nepal 27941 T 15 14
48 Nepal 27942 C 15 15
49 Nepal 27943 A 15 15
50 Nepal 27944 C 15 15
51 Nepal 27945 C 15 15
52 Nepal 27946 A 15 15
53 Nepal 27947 A 15 15
54 Nepal 27948 G 15 15
55 Nepal 27949 A 15 15
56 Nepal 27950 A 15 15
57 Nepal 27951 T 15 15
58 Nepal 27952 G 15 15
59 Nepal 27953 T 15 15
60 Nepal 27954 A 15 15
61 Nepal 27955 G 15 15
62 Nepal 27956 T 15 15
63 Nepal 27957 T 15 15
64 Nepal 27958 T 15 15
65 Nepal 27959 A 15 15
66 Nepal 27960 C 15 14
67 Nepal 27961 A 15 15
68 Nepal 27962 G 15 15
69 Nepal 27963 T 15 15
70 Nepal 27964 C 15 15
71 Nepal 27965 A 15 15
72 Nepal 27966 T 15 15
73 Nepal 27967 G 15 15
74 Nepal 27968 T 15 15
75 Nepal 27969 A 15 15
76 Nepal 27970 C 15 15
77 Nepal 27971 T 15 15
78 Nepal 27972 C 15 15
79 Nepal 27973 A 15 15
80 Nepal 27974 A 15 15
81 Nepal 27975 C 15 15
82 Nepal 27976 A 15 15
83 Nepal 27977 T 15 15
84 Nepal 27978 C 15 15
85 Nepal 27979 A 15 15
86 Nepal 27980 A 15 15
87 Nepal 27981 C 15 15
88 Nepal 27982 C 15 15
89 Nepal 27983 A 15 15
90 Nepal 27984 T 15 15
91 Nepal 27985 A 15 15
92 Nepal 27986 T 15 15
93 Nepal 27987 G 15 15
94 Nepal 27988 T 15 15
95 Nepal 27989 A 15 15
96 Nepal 27990 G 15 15
97 Nepal 27991 T 15 15
98 Nepal 27992 T 15 15
99 Nepal 27993 G 15 15
100 Nepal 27994 A 15 15
101 Nepal 27995 T 15 15
102 Nepal 27996 G 15 15
103 Nepal 27997 A 15 15
104 Nepal 27998 C 15 15
105 Nepal 27999 C 15 15
106 Nepal 28000 C 15 15
107 Nepal 28001 G 15 15
108 Nepal 28002 T 15 15
109 Nepal 28003 G 15 15
110 Nepal 28004 T 15 15
111 Nepal 28005 C 15 15
112 Nepal 28006 C 15 15
113 Nepal 28007 T 15 15
114 Nepal 28008 A 15 15
115 Nepal 28009 T 15 15
116 Nepal 28010 T 15 15
117 Nepal 28011 C 15 15
118 Nepal 28012 A 15 15
119 Nepal 28013 C 15 15
120 Nepal 28014 T 15 15
121 Nepal 28015 T 15 15
122 Nepal 28016 C 15 15
123 Nepal 28017 T 15 15
124 Nepal 28018 A 15 15
125 Nepal 28019 T 15 15
126 Nepal 28020 T 15 15
127 Nepal 28021 C 15 15
128 Nepal 28022 T 15 15
129 Nepal 28023 A 15 15
130 Nepal 28024 A 15 15
131 Nepal 28025 A 15 15
132 Nepal 28026 T 15 15
133 Nepal 28027 G 15 15
134 Nepal 28028 G 15 15
135 Nepal 28029 T 15 15
136 Nepal 28030 A 15 15
137 Nepal 28031 T 15 15
138 Nepal 28032 A 15 15
139 Nepal 28033 T 15 15
140 Nepal 28034 T 15 15
141 Nepal 28035 A 15 15
142 Nepal 28036 G 15 15
143 Nepal 28037 A 15 15
144 Nepal 28038 G 15 15
145 Nepal 28039 T 15 15
146 Nepal 28040 A 15 15
147 Nepal 28041 G 15 15
148 Nepal 28042 G 15 15
149 Nepal 28043 A 15 15
150 Nepal 28044 G 15 15
151 Nepal 28045 C 15 15
152 Nepal 28046 T 15 15
153 Nepal 28047 A 15 15
154 Nepal 28048 G 15 15
155 Nepal 28049 A 15 15
156 Nepal 28050 A 15 15
157 Nepal 28051 A 15 15
158 Nepal 28052 A 15 15
159 Nepal 28053 T 15 15
160 Nepal 28054 C 15 15
161 Nepal 28055 A 15 15
162 Nepal 28056 G 15 15
163 Nepal 28057 C 15 15
164 Nepal 28058 A 15 15
165 Nepal 28059 C 15 15
166 Nepal 28060 C 15 15
167 Nepal 28061 T 15 15
168 Nepal 28062 T 15 15
169 Nepal 28063 T 15 15
170 Nepal 28064 A 15 15
171 Nepal 28065 A 15 15
172 Nepal 28066 T 15 15
173 Nepal 28067 T 15 15
174 Nepal 28068 G 15 15
175 Nepal 28069 A 15 15
176 Nepal 28070 A 15 15
177 Nepal 28071 T 15 15
178 Nepal 28072 T 15 15
179 Nepal 28073 G 15 15
180 Nepal 28074 T 15 15
181 Nepal 28075 G 15 15
182 Nepal 28076 C 15 15
183 Nepal 28077 G 15 15
184 Nepal 28078 T 15 15
185 Nepal 28079 G 15 15
186 Nepal 28080 G 15 15
187 Nepal 28081 A 15 15
188 Nepal 28082 T 15 15
189 Nepal 28083 G 15 15
190 Nepal 28084 A 15 15
191 Nepal 28085 G 15 15
192 Nepal 28086 G 15 15
193 Nepal 28087 C 15 15
194 Nepal 28088 T 15 15
195 Nepal 28089 G 15 15
196 Nepal 28090 G 15 15
197 Nepal 28091 T 15 15
198 Nepal 28092 T 15 15
199 Nepal 28093 C 15 15
200 Nepal 28094 T 15 15
201 Nepal 28095 A 15 15
202 Nepal 28096 A 15 15
203 Nepal 28097 A 15 15
204 Nepal 28098 T 15 15
205 Nepal 28099 C 15 15
206 Nepal 28100 A 15 15
207 Nepal 28101 C 15 15
208 Nepal 28102 C 15 15
209 Nepal 28103 C 15 15
210 Nepal 28104 A 15 15
211 Nepal 28105 T 15 15
212 Nepal 28106 T 15 15
213 Nepal 28107 C 15 15
214 Nepal 28108 A 15 15
215 Nepal 28109 G 15 15
216 Nepal 28110 T 15 15
217 Nepal 28111 A 15 15
218 Nepal 28112 C 15 15
219 Nepal 28113 A 15 15
220 Nepal 28114 T 15 15
221 Nepal 28115 C 15 15
222 Nepal 28116 G 15 15
223 Nepal 28117 A 15 15
224 Nepal 28118 T 15 15
225 Nepal 28119 A 15 15
226 Nepal 28120 T 15 15
227 Nepal 28121 C 15 15
228 Nepal 28122 G 15 15
229 Nepal 28123 G 15 15
230 Nepal 28124 T 15 15
231 Nepal 28125 A 15 15
232 Nepal 28126 A 15 15
233 Nepal 28127 T 15 15
234 Nepal 28128 T 15 15
235 Nepal 28129 A 15 15
236 Nepal 28130 T 15 15
237 Nepal 28131 A 15 15
238 Nepal 28132 C 15 15
239 Nepal 28133 A 15 15
240 Nepal 28134 G 15 15
241 Nepal 28135 T 15 15
242 Nepal 28136 T 15 15
243 Nepal 28137 T 15 15
244 Nepal 28138 C 15 15
245 Nepal 28139 C 15 15
246 Nepal 28140 T 15 15
247 Nepal 28141 G 15 15
248 Nepal 28142 T 15 15
249 Nepal 28143 T 15 15
250 Nepal 28144 T 15 15
251 Nepal 28145 A 15 15
252 Nepal 28146 C 15 15
253 Nepal 28147 C 15 15
254 Nepal 28148 T 15 15
255 Nepal 28149 T 15 15
256 Nepal 28150 T 15 15
257 Nepal 28151 T 15 15
258 Nepal 28152 A 15 15
259 Nepal 28153 C 15 15
260 Nepal 28154 A 15 15
261 Nepal 28155 A 15 15
262 Nepal 28156 T 15 15
263 Nepal 28157 T 15 15
264 Nepal 28158 A 15 15
265 Nepal 28159 A 15 15
266 Nepal 28160 T 15 15
267 Nepal 28161 T 15 15
268 Nepal 28162 G 15 15
269 Nepal 28163 C 15 15
270 Nepal 28164 C 15 15
271 Nepal 28165 A 15 15
272 Nepal 28166 G 15 15
273 Nepal 28167 G 15 15
274 Nepal 28168 A 15 15
275 Nepal 28169 A 15 15
276 Nepal 28170 C 15 15
277 Nepal 28171 C 15 15
278 Nepal 28172 T 15 15
279 Nepal 28173 A 15 15
280 Nepal 28174 A 15 15
281 Nepal 28175 A 15 15
282 Nepal 28176 T 15 15
283 Nepal 28177 T 15 15
284 Nepal 28178 G 15 15
285 Nepal 28179 G 15 15
286 Nepal 28180 G 15 15
287 Nepal 28181 T 15 15
288 Nepal 28182 A 15 15
289 Nepal 28183 G 15 15
290 Nepal 28184 T 15 15
291 Nepal 28185 C 15 15
292 Nepal 28186 T 15 15
293 Nepal 28187 T 15 15
294 Nepal 28188 G 15 15
295 Nepal 28189 T 15 15
296 Nepal 28190 A 15 15
297 Nepal 28191 G 15 15
298 Nepal 28192 T 15 15
299 Nepal 28193 G 15 15
300 Nepal 28194 C 15 15
301 Nepal 28195 G 15 15
302 Nepal 28196 T 15 15
303 Nepal 28197 T 15 15
304 Nepal 28198 G 15 15
305 Nepal 28199 T 15 15
306 Nepal 28200 T 15 15
307 Nepal 28201 C 15 15
308 Nepal 28202 G 15 15
309 Nepal 28203 T 15 15
310 Nepal 28204 T 15 15
311 Nepal 28205 C 15 15
312 Nepal 28206 T 15 15
313 Nepal 28207 A 15 15
314 Nepal 28208 T 15 15
315 Nepal 28209 G 15 15
316 Nepal 28210 A 15 15
317 Nepal 28211 A 15 15
318 Nepal 28212 G 15 15
319 Nepal 28213 A 15 15
320 Nepal 28214 C 15 15
321 Nepal 28215 T 15 15
322 Nepal 28216 T 15 15
323 Nepal 28217 T 15 15
324 Nepal 28218 T 15 15
325 Nepal 28219 T 15 15
326 Nepal 28220 A 15 15
327 Nepal 28221 G 15 15
328 Nepal 28222 A 15 15
329 Nepal 28223 G 15 15
330 Nepal 28224 T 15 15
331 Nepal 28225 A 15 15
332 Nepal 28226 T 15 15
333 Nepal 28227 C 15 15
334 Nepal 28228 A 15 15
335 Nepal 28229 T 15 15
336 Nepal 28230 G 15 15
337 Nepal 28231 A 15 15
338 Nepal 28232 C 15 15
339 Nepal 28233 G 15 15
340 Nepal 28234 T 15 15
341 Nepal 28235 T 15 15
342 Nepal 28236 C 15 15
343 Nepal 28237 G 15 15
344 Nepal 28238 T 15 15
345 Nepal 28239 G 15 15
346 Nepal 28240 T 15 15
347 Nepal 28241 T 15 15
348 Nepal 28242 G 15 15
349 Nepal 28243 T 15 15
350 Nepal 28244 T 15 15
351 Nepal 28245 T 15 15
352 Nepal 28246 T 15 15
353 Nepal 28247 A 15 15
354 Nepal 28248 G 15 15
355 Nepal 28249 A 15 15
356 Nepal 28250 T 15 15
357 Nepal 28251 T 15 15
358 Nepal 28252 T 15 15
359 Nepal 28253 C 15 14
360 Nepal 28254 A 15 15
361 Nepal 28255 T 15 15
362 Nepal 28256 C A 15 14 Ile121Ile
363 Nepal 28257 T 15 15
364 Nepal 28258 A 15 15
365 Nepal 28259 A 15 15