National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 27894 A 41 41
1 Myanmar 27895 T 41 41
2 Myanmar 27896 G 41 41
3 Myanmar 27897 A 41 41
4 Myanmar 27898 A 41 41
5 Myanmar 27899 A 41 41
6 Myanmar 27900 T 41 41
7 Myanmar 27901 T 41 41
8 Myanmar 27902 T 41 41
9 Myanmar 27903 C 41 41
10 Myanmar 27904 T 41 41
11 Myanmar 27905 T 41 41
12 Myanmar 27906 G 41 41
13 Myanmar 27907 T 41 41
14 Myanmar 27908 T 41 41
15 Myanmar 27909 T 41 41
16 Myanmar 27910 T 41 41
17 Myanmar 27911 C 41 41
18 Myanmar 27912 T 41 41
19 Myanmar 27913 T 41 41
20 Myanmar 27914 A 41 41
21 Myanmar 27915 G 41 41
22 Myanmar 27916 G 41 41
23 Myanmar 27917 A 41 41
24 Myanmar 27918 A 41 41
25 Myanmar 27919 T 41 41
26 Myanmar 27920 C 41 41
27 Myanmar 27921 A 41 41
28 Myanmar 27922 T 41 41
29 Myanmar 27923 C 41 41
30 Myanmar 27924 A 41 41
31 Myanmar 27925 C 41 41
32 Myanmar 27926 A 41 41
33 Myanmar 27927 A 41 41
34 Myanmar 27928 C 41 41
35 Myanmar 27929 T 41 41
36 Myanmar 27930 G 41 41
37 Myanmar 27931 T 41 41
38 Myanmar 27932 A 41 41
39 Myanmar 27933 G 41 41
40 Myanmar 27934 C 41 41
41 Myanmar 27935 T 41 41
42 Myanmar 27936 G 41 41
43 Myanmar 27937 C 41 41
44 Myanmar 27938 A 41 41
45 Myanmar 27939 T 41 41
46 Myanmar 27940 T 41 41
47 Myanmar 27941 T 41 41
48 Myanmar 27942 C 41 41
49 Myanmar 27943 A 41 41
50 Myanmar 27944 C 41 41
51 Myanmar 27945 C 41 41
52 Myanmar 27946 A 41 41
53 Myanmar 27947 A 41 41
54 Myanmar 27948 G 41 41
55 Myanmar 27949 A 41 41
56 Myanmar 27950 A 41 41
57 Myanmar 27951 T 41 41
58 Myanmar 27952 G 41 41
59 Myanmar 27953 T 41 41
60 Myanmar 27954 A 41 41
61 Myanmar 27955 G 41 41
62 Myanmar 27956 T 41 41
63 Myanmar 27957 T 41 41
64 Myanmar 27958 T 41 41
65 Myanmar 27959 A 41 41
66 Myanmar 27960 C 41 41
67 Myanmar 27961 A 41 41
68 Myanmar 27962 G 41 41
69 Myanmar 27963 T 41 41
70 Myanmar 27964 C 41 41
71 Myanmar 27965 A 41 41
72 Myanmar 27966 T 41 41
73 Myanmar 27967 G 41 41
74 Myanmar 27968 T 41 41
75 Myanmar 27969 A 41 41
76 Myanmar 27970 C 41 41
77 Myanmar 27971 T 41 41
78 Myanmar 27972 C 41 41
79 Myanmar 27973 A 41 41
80 Myanmar 27974 A 41 41
81 Myanmar 27975 C 41 41
82 Myanmar 27976 A 41 41
83 Myanmar 27977 T 41 41
84 Myanmar 27978 C 41 41
85 Myanmar 27979 A 41 41
86 Myanmar 27980 A 41 41
87 Myanmar 27981 C 41 41
88 Myanmar 27982 C 41 41
89 Myanmar 27983 A 41 41
90 Myanmar 27984 T 41 41
91 Myanmar 27985 A 41 41
92 Myanmar 27986 T 41 41
93 Myanmar 27987 G 41 41
94 Myanmar 27988 T 41 41
95 Myanmar 27989 A 41 41
96 Myanmar 27990 G 41 41
97 Myanmar 27991 T 41 41
98 Myanmar 27992 T 41 41
99 Myanmar 27993 G 41 41
100 Myanmar 27994 A 41 41
101 Myanmar 27995 T 41 41
102 Myanmar 27996 G 41 41
103 Myanmar 27997 A 41 41
104 Myanmar 27998 C 41 41
105 Myanmar 27999 C 41 41
106 Myanmar 28000 C 41 41
107 Myanmar 28001 G 41 41
108 Myanmar 28002 T 41 41
109 Myanmar 28003 G 41 41
110 Myanmar 28004 T 41 41
111 Myanmar 28005 C 41 41
112 Myanmar 28006 C 41 41
113 Myanmar 28007 T 41 41
114 Myanmar 28008 A 41 41
115 Myanmar 28009 T 41 41
116 Myanmar 28010 T 41 41
117 Myanmar 28011 C 41 41
118 Myanmar 28012 A 41 41
119 Myanmar 28013 C 41 41
120 Myanmar 28014 T 41 41
121 Myanmar 28015 T 41 41
122 Myanmar 28016 C 41 41
123 Myanmar 28017 T 41 41
124 Myanmar 28018 A 41 41
125 Myanmar 28019 T 41 41
126 Myanmar 28020 T 41 41
127 Myanmar 28021 C 41 41
128 Myanmar 28022 T 41 41
129 Myanmar 28023 A 41 41
130 Myanmar 28024 A 41 41
131 Myanmar 28025 A 41 41
132 Myanmar 28026 T 41 41
133 Myanmar 28027 G 41 41
134 Myanmar 28028 G 41 41
135 Myanmar 28029 T 41 41
136 Myanmar 28030 A 41 41
137 Myanmar 28031 T 41 41
138 Myanmar 28032 A 41 41
139 Myanmar 28033 T 41 41
140 Myanmar 28034 T 41 41
141 Myanmar 28035 A 41 41
142 Myanmar 28036 G 41 41
143 Myanmar 28037 A 41 41
144 Myanmar 28038 G 41 41
145 Myanmar 28039 T 41 41
146 Myanmar 28040 A 41 41
147 Myanmar 28041 G 41 41
148 Myanmar 28042 G 41 41
149 Myanmar 28043 A 41 41
150 Myanmar 28044 G 41 41
151 Myanmar 28045 C 41 41
152 Myanmar 28046 T 41 41
153 Myanmar 28047 A 41 41
154 Myanmar 28048 G 41 41
155 Myanmar 28049 A 41 41
156 Myanmar 28050 A 41 41
157 Myanmar 28051 A 41 41
158 Myanmar 28052 A 41 41
159 Myanmar 28053 T 41 41
160 Myanmar 28054 C 41 41
161 Myanmar 28055 A 41 41
162 Myanmar 28056 G 41 41
163 Myanmar 28057 C 41 41
164 Myanmar 28058 A 41 41
165 Myanmar 28059 C 41 41
166 Myanmar 28060 C 41 41
167 Myanmar 28061 T 41 41
168 Myanmar 28062 T 41 41
169 Myanmar 28063 T 41 41
170 Myanmar 28064 A 41 41
171 Myanmar 28065 A 41 41
172 Myanmar 28066 T 41 41
173 Myanmar 28067 T 41 41
174 Myanmar 28068 G 41 41
175 Myanmar 28069 A 41 41
176 Myanmar 28070 A 41 41
177 Myanmar 28071 T 41 41
178 Myanmar 28072 T 41 41
179 Myanmar 28073 G 41 41
180 Myanmar 28074 T 41 41
181 Myanmar 28075 G 41 41
182 Myanmar 28076 C 41 41
183 Myanmar 28077 G 41 41
184 Myanmar 28078 T 41 41
185 Myanmar 28079 G 41 41
186 Myanmar 28080 G 41 41
187 Myanmar 28081 A 41 41
188 Myanmar 28082 T 41 41
189 Myanmar 28083 G 41 41
190 Myanmar 28084 A 41 41
191 Myanmar 28085 G 41 41
192 Myanmar 28086 G 41 41
193 Myanmar 28087 C 41 41
194 Myanmar 28088 T 41 41
195 Myanmar 28089 G 41 41
196 Myanmar 28090 G 41 41
197 Myanmar 28091 T 41 41
198 Myanmar 28092 T 41 41
199 Myanmar 28093 C 41 41
200 Myanmar 28094 T 41 41
201 Myanmar 28095 A 41 41
202 Myanmar 28096 A 41 41
203 Myanmar 28097 A 41 41
204 Myanmar 28098 T 41 41
205 Myanmar 28099 C 41 41
206 Myanmar 28100 A 41 41
207 Myanmar 28101 C 41 41
208 Myanmar 28102 C 41 41
209 Myanmar 28103 C 41 41
210 Myanmar 28104 A 41 41
211 Myanmar 28105 T 41 41
212 Myanmar 28106 T 41 41
213 Myanmar 28107 C 41 41
214 Myanmar 28108 A 41 41
215 Myanmar 28109 G 41 41
216 Myanmar 28110 T 41 41
217 Myanmar 28111 A 41 41
218 Myanmar 28112 C 41 41
219 Myanmar 28113 A 41 41
220 Myanmar 28114 T 41 41
221 Myanmar 28115 C 41 41
222 Myanmar 28116 G 41 41
223 Myanmar 28117 A 41 41
224 Myanmar 28118 T 41 41
225 Myanmar 28119 A 41 41
226 Myanmar 28120 T 41 41
227 Myanmar 28121 C 41 41
228 Myanmar 28122 G 41 41
229 Myanmar 28123 G 41 41
230 Myanmar 28124 T 41 41
231 Myanmar 28125 A 41 41
232 Myanmar 28126 A 41 41
233 Myanmar 28127 T 41 41
234 Myanmar 28128 T 41 41
235 Myanmar 28129 A 41 41
236 Myanmar 28130 T 41 41
237 Myanmar 28131 A 41 41
238 Myanmar 28132 C 41 41
239 Myanmar 28133 A 41 41
240 Myanmar 28134 G 41 41
241 Myanmar 28135 T 41 41
242 Myanmar 28136 T 41 41
243 Myanmar 28137 T 41 41
244 Myanmar 28138 C 41 41
245 Myanmar 28139 C 41 41
246 Myanmar 28140 T 41 41
247 Myanmar 28141 G 41 41
248 Myanmar 28142 T 41 41
249 Myanmar 28143 T 41 41
250 Myanmar 28144 T 41 41
251 Myanmar 28145 A 41 41
252 Myanmar 28146 C 41 41
253 Myanmar 28147 C 41 41
254 Myanmar 28148 T 41 41
255 Myanmar 28149 T 41 41
256 Myanmar 28150 T 41 41
257 Myanmar 28151 T 41 41
258 Myanmar 28152 A 41 41
259 Myanmar 28153 C 41 41
260 Myanmar 28154 A 41 41
261 Myanmar 28155 A 41 41
262 Myanmar 28156 T 41 41
263 Myanmar 28157 T 41 41
264 Myanmar 28158 A 41 41
265 Myanmar 28159 A 41 41
266 Myanmar 28160 T 41 41
267 Myanmar 28161 T 41 41
268 Myanmar 28162 G 41 41
269 Myanmar 28163 C 41 41
270 Myanmar 28164 C 41 41
271 Myanmar 28165 A 41 41
272 Myanmar 28166 G 41 41
273 Myanmar 28167 G 41 41
274 Myanmar 28168 A 41 41
275 Myanmar 28169 A 41 41
276 Myanmar 28170 C 41 41
277 Myanmar 28171 C 41 41
278 Myanmar 28172 T 41 41
279 Myanmar 28173 A 41 41
280 Myanmar 28174 A 41 41
281 Myanmar 28175 A 41 41
282 Myanmar 28176 T 41 41
283 Myanmar 28177 T 41 41
284 Myanmar 28178 G 41 41
285 Myanmar 28179 G 41 41
286 Myanmar 28180 G 41 41
287 Myanmar 28181 T 41 41
288 Myanmar 28182 A 41 41
289 Myanmar 28183 G 41 41
290 Myanmar 28184 T 41 41
291 Myanmar 28185 C 41 41
292 Myanmar 28186 T 41 41
293 Myanmar 28187 T 41 41
294 Myanmar 28188 G 41 41
295 Myanmar 28189 T 41 41
296 Myanmar 28190 A 41 41
297 Myanmar 28191 G 41 41
298 Myanmar 28192 T 41 41
299 Myanmar 28193 G 41 41
300 Myanmar 28194 C 41 41
301 Myanmar 28195 G 41 41
302 Myanmar 28196 T 41 41
303 Myanmar 28197 T 41 41
304 Myanmar 28198 G 41 41
305 Myanmar 28199 T 41 41
306 Myanmar 28200 T 41 41
307 Myanmar 28201 C 41 41
308 Myanmar 28202 G 41 41
309 Myanmar 28203 T 41 41
310 Myanmar 28204 T 41 41
311 Myanmar 28205 C 41 41
312 Myanmar 28206 T 41 41
313 Myanmar 28207 A 41 41
314 Myanmar 28208 T 41 41
315 Myanmar 28209 G 41 41
316 Myanmar 28210 A 41 41
317 Myanmar 28211 A 41 41
318 Myanmar 28212 G 41 41
319 Myanmar 28213 A 41 41
320 Myanmar 28214 C 41 41
321 Myanmar 28215 T 41 41
322 Myanmar 28216 T 41 41
323 Myanmar 28217 T 41 41
324 Myanmar 28218 T 41 41
325 Myanmar 28219 T 41 41
326 Myanmar 28220 A 41 41
327 Myanmar 28221 G 41 41
328 Myanmar 28222 A 41 41
329 Myanmar 28223 G 41 41
330 Myanmar 28224 T 41 41
331 Myanmar 28225 A 41 41
332 Myanmar 28226 T 41 41
333 Myanmar 28227 C 41 41
334 Myanmar 28228 A 41 41
335 Myanmar 28229 T 41 41
336 Myanmar 28230 G 41 41
337 Myanmar 28231 A 41 41
338 Myanmar 28232 C 41 41
339 Myanmar 28233 G 41 41
340 Myanmar 28234 T 41 41
341 Myanmar 28235 T 41 41
342 Myanmar 28236 C 41 41
343 Myanmar 28237 G 41 41
344 Myanmar 28238 T 41 41
345 Myanmar 28239 G 41 41
346 Myanmar 28240 T 41 41
347 Myanmar 28241 T 41 41
348 Myanmar 28242 G 41 41
349 Myanmar 28243 T 41 41
350 Myanmar 28244 T 41 41
351 Myanmar 28245 T 41 41
352 Myanmar 28246 T 41 41
353 Myanmar 28247 A 41 41
354 Myanmar 28248 G 41 41
355 Myanmar 28249 A 41 41
356 Myanmar 28250 T 41 41
357 Myanmar 28251 T 41 41
358 Myanmar 28252 T 41 41
359 Myanmar 28253 C 41 41
360 Myanmar 28254 A 41 41
361 Myanmar 28255 T 41 41
362 Myanmar 28256 C 41 41
363 Myanmar 28257 T 41 41
364 Myanmar 28258 A 41 41
365 Myanmar 28259 A 41 41