National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21         1                              
D     22     1                                  
E     18                                        
F     24         1                              
G     15                                        
H     12             1                          
I     30                   1                    
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                   1     1              
Q     18                                        
R     12                 1                      
S     27                   2                    
T     15                               1        
V     36         1     1                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 27894 A 94 94
1 Mozambique 27895 T 94 94
2 Mozambique 27896 G 94 94
3 Mozambique 27897 A 94 94
4 Mozambique 27898 A 94 94
5 Mozambique 27899 A 94 94
6 Mozambique 27900 T 94 94
7 Mozambique 27901 T 94 94
8 Mozambique 27902 T 94 94
9 Mozambique 27903 C 94 94
10 Mozambique 27904 T 94 94
11 Mozambique 27905 T 94 94
12 Mozambique 27906 G T 94 93 Val5Phe
13 Mozambique 27907 T 94 94
14 Mozambique 27908 T 94 94
15 Mozambique 27909 T 94 94
16 Mozambique 27910 T 94 94
17 Mozambique 27911 C 94 94
18 Mozambique 27912 T 94 94
19 Mozambique 27913 T 94 94
20 Mozambique 27914 A 94 94
21 Mozambique 27915 G 94 94
22 Mozambique 27916 G 94 94
23 Mozambique 27917 A 94 94
24 Mozambique 27918 A 94 94
25 Mozambique 27919 T 94 94
26 Mozambique 27920 C 94 94
27 Mozambique 27921 A 94 94
28 Mozambique 27922 T 94 94
29 Mozambique 27923 C 94 94
30 Mozambique 27924 A 94 94
31 Mozambique 27925 C 94 94
32 Mozambique 27926 A 94 94
33 Mozambique 27927 A T 94 93 Thr12Ser
34 Mozambique 27928 C 94 94
35 Mozambique 27929 T 94 94
36 Mozambique 27930 G 94 94
37 Mozambique 27931 T 94 94
38 Mozambique 27932 A 94 94
39 Mozambique 27933 G 94 94
40 Mozambique 27934 C 94 94
41 Mozambique 27935 T 94 94
42 Mozambique 27936 G 94 94
43 Mozambique 27937 C 94 94
44 Mozambique 27938 A 94 94
45 Mozambique 27939 T 94 94
46 Mozambique 27940 T 94 94
47 Mozambique 27941 T 94 94
48 Mozambique 27942 C 94 94
49 Mozambique 27943 A 94 94
50 Mozambique 27944 C T 94 93 His17His
51 Mozambique 27945 C 94 94
52 Mozambique 27946 A 94 94
53 Mozambique 27947 A 94 94
54 Mozambique 27948 G 94 94
55 Mozambique 27949 A 94 94
56 Mozambique 27950 A 94 94
57 Mozambique 27951 T 94 94
58 Mozambique 27952 G 94 94
59 Mozambique 27953 T 94 94
60 Mozambique 27954 A 94 94
61 Mozambique 27955 G 94 94
62 Mozambique 27956 T 94 94
63 Mozambique 27957 T 94 94
64 Mozambique 27958 T 94 94
65 Mozambique 27959 A 94 94
66 Mozambique 27960 C 94 94
67 Mozambique 27961 A 94 94
68 Mozambique 27962 G 94 94
69 Mozambique 27963 T 94 94
70 Mozambique 27964 C T 94 91 Ser24Leu
71 Mozambique 27965 A 94 94
72 Mozambique 27966 T 94 94
73 Mozambique 27967 G 94 94
74 Mozambique 27968 T 94 94
75 Mozambique 27969 A 94 94
76 Mozambique 27970 C 94 94
77 Mozambique 27971 T 94 94
78 Mozambique 27972 C 94 94
79 Mozambique 27973 A 94 94
80 Mozambique 27974 A 94 94
81 Mozambique 27975 C 94 94
82 Mozambique 27976 A 94 94
83 Mozambique 27977 T 94 94
84 Mozambique 27978 C 94 94
85 Mozambique 27979 A 94 94
86 Mozambique 27980 A 94 94
87 Mozambique 27981 C 94 94
88 Mozambique 27982 C 94 94
89 Mozambique 27983 A 94 94
90 Mozambique 27984 T 94 94
91 Mozambique 27985 A 94 94
92 Mozambique 27986 T 94 94
93 Mozambique 27987 G 94 94
94 Mozambique 27988 T 94 94
95 Mozambique 27989 A 94 94
96 Mozambique 27990 G 94 94
97 Mozambique 27991 T 94 94
98 Mozambique 27992 T 94 94
99 Mozambique 27993 G 94 94
100 Mozambique 27994 A 94 94
101 Mozambique 27995 T 94 94
102 Mozambique 27996 G 94 94
103 Mozambique 27997 A 94 94
104 Mozambique 27998 C 94 94
105 Mozambique 27999 C 94 94
106 Mozambique 28000 C 94 94
107 Mozambique 28001 G T 94 89 Pro36Pro
108 Mozambique 28002 T 94 94
109 Mozambique 28003 G T 94 93 Cys37Phe
110 Mozambique 28004 T 94 94
111 Mozambique 28005 C 94 94
112 Mozambique 28006 C 94 94
113 Mozambique 28007 T 94 94
114 Mozambique 28008 A 94 94
115 Mozambique 28009 T 94 94
116 Mozambique 28010 T 94 94
117 Mozambique 28011 C 94 94
118 Mozambique 28012 A 94 94
119 Mozambique 28013 C 94 94
120 Mozambique 28014 T 94 94
121 Mozambique 28015 T 94 94
122 Mozambique 28016 C 94 94
123 Mozambique 28017 T 94 94
124 Mozambique 28018 A 94 94
125 Mozambique 28019 T 94 94
126 Mozambique 28020 T 94 94
127 Mozambique 28021 C 94 94
128 Mozambique 28022 T 94 94
129 Mozambique 28023 A 94 94
130 Mozambique 28024 A 94 94
131 Mozambique 28025 A 94 94
132 Mozambique 28026 T 94 94
133 Mozambique 28027 G 94 94
134 Mozambique 28028 G 94 94
135 Mozambique 28029 T 94 94
136 Mozambique 28030 A 94 94
137 Mozambique 28031 T 94 94
138 Mozambique 28032 A 94 94
139 Mozambique 28033 T 94 94
140 Mozambique 28034 T 94 94
141 Mozambique 28035 A 94 94
142 Mozambique 28036 G 94 94
143 Mozambique 28037 A 94 93
144 Mozambique 28038 G 94 93
145 Mozambique 28039 T 94 93
146 Mozambique 28040 A 94 93
147 Mozambique 28041 G 94 93
148 Mozambique 28042 G 94 93
149 Mozambique 28043 A 94 93
150 Mozambique 28044 G 94 93
151 Mozambique 28045 C 94 93
152 Mozambique 28046 T 94 93
153 Mozambique 28047 A 94 91
154 Mozambique 28048 G A 94 49 Arg52Lys
155 Mozambique 28049 A 94 93
156 Mozambique 28050 A 94 93
157 Mozambique 28051 A 94 93
158 Mozambique 28052 A 94 93
159 Mozambique 28053 T 94 93
160 Mozambique 28054 C T 94 92 Ser54Leu
161 Mozambique 28055 A 94 93
162 Mozambique 28056 G 94 93
163 Mozambique 28057 C 94 93
164 Mozambique 28058 A 94 93
165 Mozambique 28059 C 94 93
166 Mozambique 28060 C 94 93
167 Mozambique 28061 T 94 93
168 Mozambique 28062 T 94 93
169 Mozambique 28063 T 94 93
170 Mozambique 28064 A 94 93
171 Mozambique 28065 A 94 93
172 Mozambique 28066 T 94 93
173 Mozambique 28067 T 94 93
174 Mozambique 28068 G 94 93
175 Mozambique 28069 A 94 93
176 Mozambique 28070 A 94 93
177 Mozambique 28071 T 94 93
178 Mozambique 28072 T 94 93
179 Mozambique 28073 G 94 93
180 Mozambique 28074 T 94 93
181 Mozambique 28075 G 94 93
182 Mozambique 28076 C 94 93
183 Mozambique 28077 G 94 93
184 Mozambique 28078 T 94 93
185 Mozambique 28079 G 94 93
186 Mozambique 28080 G 94 93
187 Mozambique 28081 A 94 93
188 Mozambique 28082 T C 94 92 Asp63Asp
189 Mozambique 28083 G 94 93
190 Mozambique 28084 A 94 93
191 Mozambique 28085 G 94 93
192 Mozambique 28086 G 94 94
193 Mozambique 28087 C 94 94
194 Mozambique 28088 T 94 94
195 Mozambique 28089 G 94 94
196 Mozambique 28090 G 94 93
197 Mozambique 28091 T 94 93
198 Mozambique 28092 T 94 93
199 Mozambique 28093 C 94 93
200 Mozambique 28094 T 94 93
201 Mozambique 28095 A 94 93
202 Mozambique 28096 A 94 94
203 Mozambique 28097 A 94 94
204 Mozambique 28098 T 94 94
205 Mozambique 28099 C 94 94
206 Mozambique 28100 A 94 94
207 Mozambique 28101 C 94 94
208 Mozambique 28102 C 94 94
209 Mozambique 28103 C 94 94
210 Mozambique 28104 A 94 94
211 Mozambique 28105 T 94 94
212 Mozambique 28106 T 94 94
213 Mozambique 28107 C 94 94
214 Mozambique 28108 A 94 94
215 Mozambique 28109 G 94 94
216 Mozambique 28110 T 94 94
217 Mozambique 28111 A 94 94
218 Mozambique 28112 C 94 94
219 Mozambique 28113 A 94 94
220 Mozambique 28114 T 94 94
221 Mozambique 28115 C 94 94
222 Mozambique 28116 G 94 94
223 Mozambique 28117 A 94 94
224 Mozambique 28118 T 94 94
225 Mozambique 28119 A 94 94
226 Mozambique 28120 T 94 94
227 Mozambique 28121 C 94 94
228 Mozambique 28122 G 94 94
229 Mozambique 28123 G 94 94
230 Mozambique 28124 T 94 94
231 Mozambique 28125 A 94 94
232 Mozambique 28126 A 94 94
233 Mozambique 28127 T 94 94
234 Mozambique 28128 T 94 94
235 Mozambique 28129 A 94 94
236 Mozambique 28130 T 94 94
237 Mozambique 28131 A 94 94
238 Mozambique 28132 C 94 94
239 Mozambique 28133 A 94 94
240 Mozambique 28134 G 94 94
241 Mozambique 28135 T 94 94
242 Mozambique 28136 T 94 94
243 Mozambique 28137 T 94 94
244 Mozambique 28138 C 94 94
245 Mozambique 28139 C 94 94
246 Mozambique 28140 T 94 94
247 Mozambique 28141 G 94 94
248 Mozambique 28142 T 94 94
249 Mozambique 28143 T 94 94
250 Mozambique 28144 T C 94 93 Leu84Ser
251 Mozambique 28145 A 94 94
252 Mozambique 28146 C 94 94
253 Mozambique 28147 C 94 94
254 Mozambique 28148 T 94 94
255 Mozambique 28149 T 94 94
256 Mozambique 28150 T 94 94
257 Mozambique 28151 T 94 94
258 Mozambique 28152 A 94 94
259 Mozambique 28153 C 94 94
260 Mozambique 28154 A 94 94
261 Mozambique 28155 A 94 94
262 Mozambique 28156 T 94 94
263 Mozambique 28157 T 94 94
264 Mozambique 28158 A 94 94
265 Mozambique 28159 A 94 94
266 Mozambique 28160 T 94 94
267 Mozambique 28161 T 94 94
268 Mozambique 28162 G 94 94
269 Mozambique 28163 C 94 94
270 Mozambique 28164 C 94 94
271 Mozambique 28165 A 93 93
272 Mozambique 28166 G 93 93
273 Mozambique 28167 G 93 93
274 Mozambique 28168 A 93 93
275 Mozambique 28169 A 93 93
276 Mozambique 28170 C 93 93
277 Mozambique 28171 C T 93 89 Pro93Leu
278 Mozambique 28172 T 93 93
279 Mozambique 28173 A 93 93
280 Mozambique 28174 A 93 93
281 Mozambique 28175 A 93 93
282 Mozambique 28176 T 93 93
283 Mozambique 28177 T 93 93
284 Mozambique 28178 G 93 93
285 Mozambique 28179 G 93 93
286 Mozambique 28180 G 93 93
287 Mozambique 28181 T 93 93
288 Mozambique 28182 A 93 93
289 Mozambique 28183 G 93 93
290 Mozambique 28184 T 93 93
291 Mozambique 28185 C 93 93
292 Mozambique 28186 T 93 93
293 Mozambique 28187 T 93 93
294 Mozambique 28188 G 93 93
295 Mozambique 28189 T 93 93
296 Mozambique 28190 A 93 93
297 Mozambique 28191 G 93 93
298 Mozambique 28192 T 93 93
299 Mozambique 28193 G 93 93
300 Mozambique 28194 C 93 93
301 Mozambique 28195 G 93 93
302 Mozambique 28196 T 93 93
303 Mozambique 28197 T 93 93
304 Mozambique 28198 G 93 93
305 Mozambique 28199 T 93 93
306 Mozambique 28200 T 93 93
307 Mozambique 28201 C 93 93
308 Mozambique 28202 G 93 93
309 Mozambique 28203 T 93 93
310 Mozambique 28204 T 93 93
311 Mozambique 28205 C 93 93
312 Mozambique 28206 T 93 93
313 Mozambique 28207 A 93 93
314 Mozambique 28208 T 93 93
315 Mozambique 28209 G 93 93
316 Mozambique 28210 A 93 93
317 Mozambique 28211 A 93 93
318 Mozambique 28212 G 93 93
319 Mozambique 28213 A 93 93
320 Mozambique 28214 C 93 93
321 Mozambique 28215 T 93 93
322 Mozambique 28216 T 93 93
323 Mozambique 28217 T 93 93
324 Mozambique 28218 T 93 93
325 Mozambique 28219 T 93 93
326 Mozambique 28220 A 93 93
327 Mozambique 28221 G 93 93
328 Mozambique 28222 A 93 93
329 Mozambique 28223 G 93 93
330 Mozambique 28224 T 93 93
331 Mozambique 28225 A 93 93
332 Mozambique 28226 T 93 93
333 Mozambique 28227 C 93 93
334 Mozambique 28228 A 93 93
335 Mozambique 28229 T 93 93
336 Mozambique 28230 G 93 93
337 Mozambique 28231 A 93 93
338 Mozambique 28232 C 93 93
339 Mozambique 28233 G A 93 92 Val114Ile
340 Mozambique 28234 T 93 93
341 Mozambique 28235 T 93 93
342 Mozambique 28236 C 93 93
343 Mozambique 28237 G 93 93
344 Mozambique 28238 T 93 93
345 Mozambique 28239 G 93 93
346 Mozambique 28240 T 93 93
347 Mozambique 28241 T 93 93
348 Mozambique 28242 G 93 93
349 Mozambique 28243 T 93 93
350 Mozambique 28244 T 93 93
351 Mozambique 28245 T 93 93
352 Mozambique 28246 T 93 93
353 Mozambique 28247 A 93 93
354 Mozambique 28248 G 93 93
355 Mozambique 28249 A 93 93
356 Mozambique 28250 T 93 93
357 Mozambique 28251 T 92 92
358 Mozambique 28252 T 92 92
359 Mozambique 28253 C T 92 65 Phe120Phe
360 Mozambique 28254 A C 92 88 Ile121Leu
361 Mozambique 28255 T 92 92
362 Mozambique 28256 C 92 92
363 Mozambique 28257 T 92 92
364 Mozambique 28258 A 92 92
365 Mozambique 28259 A 92 92