National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21   2                                    
D     22                                       1
E     18                                        
F     24         1                     1   1    
G 1   15                             1          
H     12             1                          
I     30               1                        
K     15                                        
L     30         2         1           1   1    
M     3                                        
N     6                                        
P     21                               1        
Q 1   18                                        
R     12             1                          
S     27         1         1                    
T     15                                        
V     36                   1                    
W     3                                        
Y     21             1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 27894 A 117 117
1 Morocco 27895 T 117 117
2 Morocco 27896 G 117 117
3 Morocco 27897 A 117 117
4 Morocco 27898 A 117 117
5 Morocco 27899 A 117 117
6 Morocco 27900 T 117 117
7 Morocco 27901 T 117 117
8 Morocco 27902 T 117 117
9 Morocco 27903 C 117 117
10 Morocco 27904 T 117 117
11 Morocco 27905 T 117 117
12 Morocco 27906 G 117 117
13 Morocco 27907 T 117 117
14 Morocco 27908 T 117 117
15 Morocco 27909 T 117 117
16 Morocco 27910 T 117 117
17 Morocco 27911 C 117 117
18 Morocco 27912 T 117 117
19 Morocco 27913 T 117 117
20 Morocco 27914 A 117 117
21 Morocco 27915 G A 117 116 Gly8Arg
22 Morocco 27916 G 117 117
23 Morocco 27917 A 117 117
24 Morocco 27918 A 117 117
25 Morocco 27919 T 117 117
26 Morocco 27920 C T 117 116 Ile9Ile
27 Morocco 27921 A 117 117
28 Morocco 27922 T 117 117
29 Morocco 27923 C 117 117
30 Morocco 27924 A 117 117
31 Morocco 27925 C 117 117
32 Morocco 27926 A 117 117
33 Morocco 27927 A 117 117
34 Morocco 27928 C 117 117
35 Morocco 27929 T 117 117
36 Morocco 27930 G 117 117
37 Morocco 27931 T 117 117
38 Morocco 27932 A 117 117
39 Morocco 27933 G 117 117
40 Morocco 27934 C 117 117
41 Morocco 27935 T 117 117
42 Morocco 27936 G 117 117
43 Morocco 27937 C 117 117
44 Morocco 27938 A 117 117
45 Morocco 27939 T 117 117
46 Morocco 27940 T 117 117
47 Morocco 27941 T 117 117
48 Morocco 27942 C 117 117
49 Morocco 27943 A 117 117
50 Morocco 27944 C T 117 116 His17His
51 Morocco 27945 C 117 117
52 Morocco 27946 A 117 117
53 Morocco 27947 A 117 117
54 Morocco 27948 G 117 117
55 Morocco 27949 A 117 117
56 Morocco 27950 A 117 117
57 Morocco 27951 T 117 117
58 Morocco 27952 G 117 117
59 Morocco 27953 T 117 117
60 Morocco 27954 A 117 117
61 Morocco 27955 G 117 117
62 Morocco 27956 T 117 117
63 Morocco 27957 T 117 117
64 Morocco 27958 T 117 117
65 Morocco 27959 A 117 117
66 Morocco 27960 C 117 117
67 Morocco 27961 A 117 117
68 Morocco 27962 G 117 117
69 Morocco 27963 T 117 117
70 Morocco 27964 C 117 117
71 Morocco 27965 A 117 117
72 Morocco 27966 T 117 117
73 Morocco 27967 G 117 117
74 Morocco 27968 T 117 117
75 Morocco 27969 A 117 117
76 Morocco 27970 C 117 117
77 Morocco 27971 T 117 117
78 Morocco 27972 C 117 117
79 Morocco 27973 A 117 117
80 Morocco 27974 A 117 117
81 Morocco 27975 C 117 117
82 Morocco 27976 A 117 117
83 Morocco 27977 T 117 117
84 Morocco 27978 C T 117 116 Gln29*
85 Morocco 27979 A 117 117
86 Morocco 27980 A 117 117
87 Morocco 27981 C T 117 116 Pro30Ser
88 Morocco 27982 C 117 117
89 Morocco 27983 A 117 117
90 Morocco 27984 T C 117 115 Tyr31His
91 Morocco 27985 A 117 117
92 Morocco 27986 T 117 117
93 Morocco 27987 G 117 117
94 Morocco 27988 T 117 117
95 Morocco 27989 A 117 117
96 Morocco 27990 G 117 117
97 Morocco 27991 T 117 117
98 Morocco 27992 T 117 117
99 Morocco 27993 G 117 117
100 Morocco 27994 A 117 117
101 Morocco 27995 T 117 117
102 Morocco 27996 G 117 117
103 Morocco 27997 A 117 117
104 Morocco 27998 C 117 117
105 Morocco 27999 C 117 117
106 Morocco 28000 C 117 117
107 Morocco 28001 G 117 117
108 Morocco 28002 T 117 117
109 Morocco 28003 G 117 117
110 Morocco 28004 T C 117 116 Cys37Cys
111 Morocco 28005 C 117 117
112 Morocco 28006 C 117 117
113 Morocco 28007 T 117 117
114 Morocco 28008 A 117 117
115 Morocco 28009 T 117 117
116 Morocco 28010 T 117 117
117 Morocco 28011 C 117 117
118 Morocco 28012 A 117 117
119 Morocco 28013 C 117 117
120 Morocco 28014 T G 117 116 Phe41Val
121 Morocco 28015 T 117 117
122 Morocco 28016 C 117 117
123 Morocco 28017 T 117 117
124 Morocco 28018 A 117 117
125 Morocco 28019 T 117 117
126 Morocco 28020 T 117 117
127 Morocco 28021 C 117 117
128 Morocco 28022 T 117 117
129 Morocco 28023 A 118 118
130 Morocco 28024 A 118 118
131 Morocco 28025 A 118 118
132 Morocco 28026 T 118 118
133 Morocco 28027 G 118 118
134 Morocco 28028 G 118 118
135 Morocco 28029 T 118 118
136 Morocco 28030 A 118 118
137 Morocco 28031 T 118 118
138 Morocco 28032 A 118 118
139 Morocco 28033 T 118 118
140 Morocco 28034 T 118 118
141 Morocco 28035 A 118 118
142 Morocco 28036 G 118 118
143 Morocco 28037 A 118 118
144 Morocco 28038 G 118 118
145 Morocco 28039 T 118 118
146 Morocco 28040 A 118 118
147 Morocco 28041 G T 118 117 Gly50*
148 Morocco 28042 G 118 118
149 Morocco 28043 A 118 118
150 Morocco 28044 G 118 118
151 Morocco 28045 C 118 118
152 Morocco 28046 T 118 118
153 Morocco 28047 A 118 118
154 Morocco 28048 G 118 118
155 Morocco 28049 A 118 118
156 Morocco 28050 A 118 118
157 Morocco 28051 A 118 118
158 Morocco 28052 A 118 118
159 Morocco 28053 T 118 118
160 Morocco 28054 C T 118 117 Ser54Leu
161 Morocco 28055 A 118 118
162 Morocco 28056 G 118 118
163 Morocco 28057 C 118 118
164 Morocco 28058 A 118 118
165 Morocco 28059 C 118 118
166 Morocco 28060 C 118 118
167 Morocco 28061 T 118 118
168 Morocco 28062 T 118 118
169 Morocco 28063 T 118 118
170 Morocco 28064 A 118 118
171 Morocco 28065 A 118 118
172 Morocco 28066 T 118 118
173 Morocco 28067 T 118 118
174 Morocco 28068 G 118 118
175 Morocco 28069 A 118 118
176 Morocco 28070 A 118 118
177 Morocco 28071 T 118 118
178 Morocco 28072 T 118 118
179 Morocco 28073 G T 118 117 Leu60Phe
180 Morocco 28074 T 117 117
181 Morocco 28075 G 117 117
182 Morocco 28076 C 117 117
183 Morocco 28077 G C 117 111 Val62Leu
184 Morocco 28078 T 117 117
185 Morocco 28079 G 117 117
186 Morocco 28080 G 117 117
187 Morocco 28081 A 118 118
188 Morocco 28082 T 120 120
189 Morocco 28083 G 120 120
190 Morocco 28084 A 120 120
191 Morocco 28085 G 121 121
192 Morocco 28086 G 121 121
193 Morocco 28087 C 121 121
194 Morocco 28088 T 121 121
195 Morocco 28089 G 121 121
196 Morocco 28090 G 121 121
197 Morocco 28091 T 121 121
198 Morocco 28092 T 121 121
199 Morocco 28093 C T 121 120 Ser67Phe
200 Morocco 28094 T 121 121
201 Morocco 28095 A 121 121
202 Morocco 28096 A 121 121
203 Morocco 28097 A 121 121
204 Morocco 28098 T 121 121
205 Morocco 28099 C 121 121
206 Morocco 28100 A 121 121
207 Morocco 28101 C 121 121
208 Morocco 28102 C 121 121
209 Morocco 28103 C 121 121
210 Morocco 28104 A 121 121
211 Morocco 28105 T 121 121
212 Morocco 28106 T 121 121
213 Morocco 28107 C 121 121
214 Morocco 28108 A 121 121
215 Morocco 28109 G 121 121
216 Morocco 28110 T 121 121
217 Morocco 28111 A 121 121
218 Morocco 28112 C 121 121
219 Morocco 28113 A 121 121
220 Morocco 28114 T 121 121
221 Morocco 28115 C 121 121
222 Morocco 28116 G 121 121
223 Morocco 28117 A 121 121
224 Morocco 28118 T 121 121
225 Morocco 28119 A 121 121
226 Morocco 28120 T 121 121
227 Morocco 28121 C 121 121
228 Morocco 28122 G 121 121
229 Morocco 28123 G 121 121
230 Morocco 28124 T 121 121
231 Morocco 28125 A 121 121
232 Morocco 28126 A 121 121
233 Morocco 28127 T 121 121
234 Morocco 28128 T 121 121
235 Morocco 28129 A 121 121
236 Morocco 28130 T 121 121
237 Morocco 28131 A 121 121
238 Morocco 28132 C 121 121
239 Morocco 28133 A 121 121
240 Morocco 28134 G 122 122
241 Morocco 28135 T 122 122
242 Morocco 28136 T 122 122
243 Morocco 28137 T 122 122
244 Morocco 28138 C 122 122
245 Morocco 28139 C 122 122
246 Morocco 28140 T 122 122
247 Morocco 28141 G 122 122
248 Morocco 28142 T 122 122
249 Morocco 28143 T 122 122
250 Morocco 28144 T 122 122
251 Morocco 28145 A 122 122
252 Morocco 28146 C 122 122
253 Morocco 28147 C 122 122
254 Morocco 28148 T 122 122
255 Morocco 28149 T 122 122
256 Morocco 28150 T 122 122
257 Morocco 28151 T 122 122
258 Morocco 28152 A 122 122
259 Morocco 28153 C 122 122
260 Morocco 28154 A 122 122
261 Morocco 28155 A 122 122
262 Morocco 28156 T 122 122
263 Morocco 28157 T 122 122
264 Morocco 28158 A 122 122
265 Morocco 28159 A 122 122
266 Morocco 28160 T 122 122
267 Morocco 28161 T 122 122
268 Morocco 28162 G 122 122
269 Morocco 28163 C T 122 121 Cys90Cys
270 Morocco 28164 C 122 122
271 Morocco 28165 A 122 122
272 Morocco 28166 G 122 122
273 Morocco 28167 G 122 122
274 Morocco 28168 A 122 122
275 Morocco 28169 A 122 122
276 Morocco 28170 C 121 121
277 Morocco 28171 C 120 120
278 Morocco 28172 T 120 120
279 Morocco 28173 A 120 120
280 Morocco 28174 A 120 120
281 Morocco 28175 A 120 120
282 Morocco 28176 T 120 120
283 Morocco 28177 T 120 120
284 Morocco 28178 G T,A 120 118 Leu95Phe-p.Leu95Leu
285 Morocco 28179 G 120 120
286 Morocco 28180 G 120 120
287 Morocco 28181 T 120 120
288 Morocco 28182 A 120 120
289 Morocco 28183 G 120 120
290 Morocco 28184 T 120 120
291 Morocco 28185 C 120 120
292 Morocco 28186 T 120 120
293 Morocco 28187 T 120 120
294 Morocco 28188 G 120 120
295 Morocco 28189 T 120 120
296 Morocco 28190 A 120 120
297 Morocco 28191 G 120 120
298 Morocco 28192 T 120 120
299 Morocco 28193 G 120 120
300 Morocco 28194 C 120 120
301 Morocco 28195 G A 120 118 Arg101His
302 Morocco 28196 T 120 120
303 Morocco 28197 T 120 120
304 Morocco 28198 G 120 120
305 Morocco 28199 T 120 120
306 Morocco 28200 T 120 120
307 Morocco 28201 C 120 120
308 Morocco 28202 G 120 120
309 Morocco 28203 T 120 120
310 Morocco 28204 T 120 120
311 Morocco 28205 C 120 120
312 Morocco 28206 T 120 120
313 Morocco 28207 A 120 120
314 Morocco 28208 T 120 120
315 Morocco 28209 G 120 120
316 Morocco 28210 A 120 120
317 Morocco 28211 A 120 120
318 Morocco 28212 G 120 120
319 Morocco 28213 A 120 120
320 Morocco 28214 C 120 120
321 Morocco 28215 T 120 120
322 Morocco 28216 T 120 120
323 Morocco 28217 T 120 120
324 Morocco 28218 T 120 120
325 Morocco 28219 T C 120 119 Leu109Ser
326 Morocco 28220 A 120 120
327 Morocco 28221 G 120 120
328 Morocco 28222 A 120 120
329 Morocco 28223 G 120 120
330 Morocco 28224 T 120 120
331 Morocco 28225 A 120 120
332 Morocco 28226 T 120 120
333 Morocco 28227 C 120 120
334 Morocco 28228 A 120 120
335 Morocco 28229 T 120 120
336 Morocco 28230 G 120 120
337 Morocco 28231 A 120 120
338 Morocco 28232 C 120 120
339 Morocco 28233 G 120 120
340 Morocco 28234 T 120 120
341 Morocco 28235 T 120 120
342 Morocco 28236 C 120 120
343 Morocco 28237 G 120 120
344 Morocco 28238 T 120 120
345 Morocco 28239 G 120 120
346 Morocco 28240 T 120 120
347 Morocco 28241 T 120 120
348 Morocco 28242 G 120 120
349 Morocco 28243 T 120 120
350 Morocco 28244 T 120 120
351 Morocco 28245 T G 120 119 Leu118Val
352 Morocco 28246 T 120 120
353 Morocco 28247 A 120 120
354 Morocco 28248 G T 120 119 Asp119Tyr
355 Morocco 28249 A 120 120
356 Morocco 28250 T 120 120
357 Morocco 28251 T 119 119
358 Morocco 28252 T C 119 118 Phe120Ser
359 Morocco 28253 C T 119 118 Phe120Phe
360 Morocco 28254 A 119 119
361 Morocco 28255 T 119 119
362 Morocco 28256 C 119 119
363 Morocco 28257 T 119 119
364 Morocco 28258 A 119 119
365 Morocco 28259 A 119 119