National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 27894 A 12 12
1 Montenegro 27895 T 12 12
2 Montenegro 27896 G 12 12
3 Montenegro 27897 A 12 12
4 Montenegro 27898 A 12 12
5 Montenegro 27899 A 12 12
6 Montenegro 27900 T 12 12
7 Montenegro 27901 T 12 12
8 Montenegro 27902 T 12 12
9 Montenegro 27903 C 12 12
10 Montenegro 27904 T 12 12
11 Montenegro 27905 T 12 12
12 Montenegro 27906 G 12 12
13 Montenegro 27907 T 12 12
14 Montenegro 27908 T 12 12
15 Montenegro 27909 T 12 12
16 Montenegro 27910 T 12 12
17 Montenegro 27911 C 12 12
18 Montenegro 27912 T 12 12
19 Montenegro 27913 T 12 12
20 Montenegro 27914 A 12 12
21 Montenegro 27915 G 12 12
22 Montenegro 27916 G 12 12
23 Montenegro 27917 A 12 12
24 Montenegro 27918 A 12 12
25 Montenegro 27919 T 12 12
26 Montenegro 27920 C 12 12
27 Montenegro 27921 A 12 12
28 Montenegro 27922 T 12 12
29 Montenegro 27923 C 12 12
30 Montenegro 27924 A 12 12
31 Montenegro 27925 C 12 12
32 Montenegro 27926 A 12 12
33 Montenegro 27927 A 12 12
34 Montenegro 27928 C 12 12
35 Montenegro 27929 T 12 12
36 Montenegro 27930 G 12 12
37 Montenegro 27931 T 12 12
38 Montenegro 27932 A 12 12
39 Montenegro 27933 G 12 12
40 Montenegro 27934 C 12 12
41 Montenegro 27935 T 12 12
42 Montenegro 27936 G 12 12
43 Montenegro 27937 C 12 12
44 Montenegro 27938 A 12 12
45 Montenegro 27939 T 12 12
46 Montenegro 27940 T 12 12
47 Montenegro 27941 T 12 12
48 Montenegro 27942 C 12 12
49 Montenegro 27943 A 12 12
50 Montenegro 27944 C 12 12
51 Montenegro 27945 C 12 12
52 Montenegro 27946 A 12 12
53 Montenegro 27947 A 12 12
54 Montenegro 27948 G 12 12
55 Montenegro 27949 A 12 12
56 Montenegro 27950 A 12 12
57 Montenegro 27951 T 12 12
58 Montenegro 27952 G 12 12
59 Montenegro 27953 T 12 12
60 Montenegro 27954 A 12 12
61 Montenegro 27955 G 12 12
62 Montenegro 27956 T 12 12
63 Montenegro 27957 T 12 12
64 Montenegro 27958 T 12 12
65 Montenegro 27959 A 12 12
66 Montenegro 27960 C 12 12
67 Montenegro 27961 A 12 12
68 Montenegro 27962 G 12 12
69 Montenegro 27963 T 12 12
70 Montenegro 27964 C 12 12
71 Montenegro 27965 A 12 12
72 Montenegro 27966 T 12 12
73 Montenegro 27967 G 12 12
74 Montenegro 27968 T 12 12
75 Montenegro 27969 A 12 12
76 Montenegro 27970 C 12 12
77 Montenegro 27971 T 12 12
78 Montenegro 27972 C 12 12
79 Montenegro 27973 A 12 12
80 Montenegro 27974 A 12 12
81 Montenegro 27975 C 12 12
82 Montenegro 27976 A 12 12
83 Montenegro 27977 T 12 12
84 Montenegro 27978 C 12 12
85 Montenegro 27979 A 12 12
86 Montenegro 27980 A 12 12
87 Montenegro 27981 C 12 12
88 Montenegro 27982 C 12 12
89 Montenegro 27983 A 12 12
90 Montenegro 27984 T 12 12
91 Montenegro 27985 A 12 12
92 Montenegro 27986 T 12 12
93 Montenegro 27987 G 12 12
94 Montenegro 27988 T 12 12
95 Montenegro 27989 A 12 12
96 Montenegro 27990 G 12 12
97 Montenegro 27991 T 12 12
98 Montenegro 27992 T 12 12
99 Montenegro 27993 G 12 12
100 Montenegro 27994 A 12 12
101 Montenegro 27995 T 12 12
102 Montenegro 27996 G 12 12
103 Montenegro 27997 A 12 12
104 Montenegro 27998 C 12 12
105 Montenegro 27999 C 12 12
106 Montenegro 28000 C 12 12
107 Montenegro 28001 G 12 12
108 Montenegro 28002 T 12 12
109 Montenegro 28003 G 12 12
110 Montenegro 28004 T 12 12
111 Montenegro 28005 C 12 12
112 Montenegro 28006 C 12 12
113 Montenegro 28007 T 12 12
114 Montenegro 28008 A 12 12
115 Montenegro 28009 T 12 12
116 Montenegro 28010 T 12 12
117 Montenegro 28011 C 12 12
118 Montenegro 28012 A 12 12
119 Montenegro 28013 C 12 12
120 Montenegro 28014 T 12 12
121 Montenegro 28015 T 12 12
122 Montenegro 28016 C 12 12
123 Montenegro 28017 T 12 12
124 Montenegro 28018 A 12 12
125 Montenegro 28019 T 12 12
126 Montenegro 28020 T 12 12
127 Montenegro 28021 C 12 12
128 Montenegro 28022 T 12 12
129 Montenegro 28023 A 12 12
130 Montenegro 28024 A 12 12
131 Montenegro 28025 A 12 12
132 Montenegro 28026 T 12 12
133 Montenegro 28027 G 12 12
134 Montenegro 28028 G 12 12
135 Montenegro 28029 T 12 12
136 Montenegro 28030 A 12 12
137 Montenegro 28031 T 12 12
138 Montenegro 28032 A 12 12
139 Montenegro 28033 T 12 12
140 Montenegro 28034 T 12 12
141 Montenegro 28035 A 12 12
142 Montenegro 28036 G 12 12
143 Montenegro 28037 A 12 12
144 Montenegro 28038 G 12 12
145 Montenegro 28039 T 12 12
146 Montenegro 28040 A 12 12
147 Montenegro 28041 G 12 12
148 Montenegro 28042 G 12 12
149 Montenegro 28043 A 12 12
150 Montenegro 28044 G 12 12
151 Montenegro 28045 C 12 12
152 Montenegro 28046 T 12 12
153 Montenegro 28047 A 12 12
154 Montenegro 28048 G 12 12
155 Montenegro 28049 A 12 12
156 Montenegro 28050 A 12 12
157 Montenegro 28051 A 12 12
158 Montenegro 28052 A 12 12
159 Montenegro 28053 T 12 12
160 Montenegro 28054 C 12 12
161 Montenegro 28055 A 12 12
162 Montenegro 28056 G 12 12
163 Montenegro 28057 C 12 12
164 Montenegro 28058 A 12 12
165 Montenegro 28059 C 12 12
166 Montenegro 28060 C 12 12
167 Montenegro 28061 T 12 12
168 Montenegro 28062 T 12 12
169 Montenegro 28063 T 12 12
170 Montenegro 28064 A 12 12
171 Montenegro 28065 A 12 12
172 Montenegro 28066 T 12 12
173 Montenegro 28067 T 12 12
174 Montenegro 28068 G 12 12
175 Montenegro 28069 A 12 12
176 Montenegro 28070 A 12 12
177 Montenegro 28071 T 12 12
178 Montenegro 28072 T 12 12
179 Montenegro 28073 G 12 12
180 Montenegro 28074 T 12 12
181 Montenegro 28075 G 12 12
182 Montenegro 28076 C 12 12
183 Montenegro 28077 G 12 12
184 Montenegro 28078 T 12 12
185 Montenegro 28079 G 12 12
186 Montenegro 28080 G 12 12
187 Montenegro 28081 A 12 12
188 Montenegro 28082 T 12 12
189 Montenegro 28083 G 12 12
190 Montenegro 28084 A 12 12
191 Montenegro 28085 G 12 12
192 Montenegro 28086 G 12 12
193 Montenegro 28087 C 12 12
194 Montenegro 28088 T 12 12
195 Montenegro 28089 G 12 12
196 Montenegro 28090 G 12 12
197 Montenegro 28091 T 12 12
198 Montenegro 28092 T 12 12
199 Montenegro 28093 C 12 12
200 Montenegro 28094 T 12 12
201 Montenegro 28095 A 12 12
202 Montenegro 28096 A 12 12
203 Montenegro 28097 A 12 12
204 Montenegro 28098 T 12 12
205 Montenegro 28099 C 12 12
206 Montenegro 28100 A 12 12
207 Montenegro 28101 C 12 12
208 Montenegro 28102 C 12 12
209 Montenegro 28103 C 12 12
210 Montenegro 28104 A 12 12
211 Montenegro 28105 T 12 12
212 Montenegro 28106 T 12 12
213 Montenegro 28107 C 12 12
214 Montenegro 28108 A 12 12
215 Montenegro 28109 G 12 12
216 Montenegro 28110 T 12 12
217 Montenegro 28111 A 12 12
218 Montenegro 28112 C 12 12
219 Montenegro 28113 A 12 12
220 Montenegro 28114 T 12 12
221 Montenegro 28115 C 12 12
222 Montenegro 28116 G 12 12
223 Montenegro 28117 A 12 12
224 Montenegro 28118 T 12 12
225 Montenegro 28119 A 12 12
226 Montenegro 28120 T 12 12
227 Montenegro 28121 C 12 12
228 Montenegro 28122 G 12 12
229 Montenegro 28123 G 12 12
230 Montenegro 28124 T 12 12
231 Montenegro 28125 A 12 12
232 Montenegro 28126 A 12 12
233 Montenegro 28127 T 12 12
234 Montenegro 28128 T 12 12
235 Montenegro 28129 A 12 12
236 Montenegro 28130 T 12 12
237 Montenegro 28131 A 12 12
238 Montenegro 28132 C 12 12
239 Montenegro 28133 A 12 12
240 Montenegro 28134 G 12 12
241 Montenegro 28135 T 12 12
242 Montenegro 28136 T 12 12
243 Montenegro 28137 T 12 12
244 Montenegro 28138 C 12 12
245 Montenegro 28139 C 12 12
246 Montenegro 28140 T 12 12
247 Montenegro 28141 G 12 12
248 Montenegro 28142 T 12 12
249 Montenegro 28143 T 12 12
250 Montenegro 28144 T 12 12
251 Montenegro 28145 A 12 12
252 Montenegro 28146 C 12 12
253 Montenegro 28147 C 12 12
254 Montenegro 28148 T 12 12
255 Montenegro 28149 T 12 12
256 Montenegro 28150 T 12 12
257 Montenegro 28151 T 12 12
258 Montenegro 28152 A 12 12
259 Montenegro 28153 C 12 12
260 Montenegro 28154 A 12 12
261 Montenegro 28155 A 12 12
262 Montenegro 28156 T 12 12
263 Montenegro 28157 T 12 12
264 Montenegro 28158 A 12 12
265 Montenegro 28159 A 12 12
266 Montenegro 28160 T 12 12
267 Montenegro 28161 T 12 12
268 Montenegro 28162 G 12 12
269 Montenegro 28163 C 12 12
270 Montenegro 28164 C 12 12
271 Montenegro 28165 A 12 12
272 Montenegro 28166 G 12 12
273 Montenegro 28167 G 12 12
274 Montenegro 28168 A 12 12
275 Montenegro 28169 A 12 12
276 Montenegro 28170 C 12 12
277 Montenegro 28171 C 12 12
278 Montenegro 28172 T 12 12
279 Montenegro 28173 A 12 12
280 Montenegro 28174 A 12 12
281 Montenegro 28175 A 12 12
282 Montenegro 28176 T 12 12
283 Montenegro 28177 T 12 12
284 Montenegro 28178 G 12 12
285 Montenegro 28179 G 12 12
286 Montenegro 28180 G 12 12
287 Montenegro 28181 T 12 12
288 Montenegro 28182 A 12 12
289 Montenegro 28183 G 12 12
290 Montenegro 28184 T 12 12
291 Montenegro 28185 C 12 12
292 Montenegro 28186 T 12 12
293 Montenegro 28187 T 12 12
294 Montenegro 28188 G 12 12
295 Montenegro 28189 T 12 12
296 Montenegro 28190 A 12 12
297 Montenegro 28191 G 12 12
298 Montenegro 28192 T 12 12
299 Montenegro 28193 G 12 12
300 Montenegro 28194 C 12 12
301 Montenegro 28195 G 12 12
302 Montenegro 28196 T 12 12
303 Montenegro 28197 T 12 12
304 Montenegro 28198 G 12 12
305 Montenegro 28199 T 12 12
306 Montenegro 28200 T 12 12
307 Montenegro 28201 C 12 12
308 Montenegro 28202 G 12 12
309 Montenegro 28203 T 12 12
310 Montenegro 28204 T 12 12
311 Montenegro 28205 C 12 12
312 Montenegro 28206 T 12 12
313 Montenegro 28207 A 12 12
314 Montenegro 28208 T 12 12
315 Montenegro 28209 G 12 12
316 Montenegro 28210 A 12 12
317 Montenegro 28211 A 12 12
318 Montenegro 28212 G 12 12
319 Montenegro 28213 A 12 12
320 Montenegro 28214 C 12 12
321 Montenegro 28215 T 12 12
322 Montenegro 28216 T 12 12
323 Montenegro 28217 T 12 12
324 Montenegro 28218 T 12 12
325 Montenegro 28219 T 12 12
326 Montenegro 28220 A 12 12
327 Montenegro 28221 G 12 12
328 Montenegro 28222 A 12 12
329 Montenegro 28223 G 12 12
330 Montenegro 28224 T 12 12
331 Montenegro 28225 A 12 12
332 Montenegro 28226 T 12 12
333 Montenegro 28227 C 12 12
334 Montenegro 28228 A 12 12
335 Montenegro 28229 T 12 12
336 Montenegro 28230 G 12 12
337 Montenegro 28231 A 12 12
338 Montenegro 28232 C 12 12
339 Montenegro 28233 G 12 12
340 Montenegro 28234 T 12 12
341 Montenegro 28235 T 12 12
342 Montenegro 28236 C 12 12
343 Montenegro 28237 G 12 12
344 Montenegro 28238 T 12 12
345 Montenegro 28239 G 12 12
346 Montenegro 28240 T 12 12
347 Montenegro 28241 T 12 12
348 Montenegro 28242 G 12 12
349 Montenegro 28243 T 12 12
350 Montenegro 28244 T 12 12
351 Montenegro 28245 T 12 12
352 Montenegro 28246 T 12 12
353 Montenegro 28247 A 12 12
354 Montenegro 28248 G 12 12
355 Montenegro 28249 A 12 12
356 Montenegro 28250 T 12 12
357 Montenegro 28251 T 12 12
358 Montenegro 28252 T 12 12
359 Montenegro 28253 C 12 12
360 Montenegro 28254 A 12 12
361 Montenegro 28255 T 12 12
362 Montenegro 28256 C 12 12
363 Montenegro 28257 T 12 12
364 Montenegro 28258 A 12 12
365 Montenegro 28259 A 12 12