National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 27894 A 7 7
1 Mongolia 27895 T 7 7
2 Mongolia 27896 G 7 7
3 Mongolia 27897 A 7 7
4 Mongolia 27898 A 7 7
5 Mongolia 27899 A 7 7
6 Mongolia 27900 T 7 7
7 Mongolia 27901 T 7 7
8 Mongolia 27902 T 7 7
9 Mongolia 27903 C 7 7
10 Mongolia 27904 T 7 7
11 Mongolia 27905 T 7 7
12 Mongolia 27906 G 7 7
13 Mongolia 27907 T 7 7
14 Mongolia 27908 T 7 7
15 Mongolia 27909 T 7 7
16 Mongolia 27910 T 7 7
17 Mongolia 27911 C 7 7
18 Mongolia 27912 T 7 7
19 Mongolia 27913 T 7 7
20 Mongolia 27914 A 7 7
21 Mongolia 27915 G 7 7
22 Mongolia 27916 G 7 7
23 Mongolia 27917 A 7 7
24 Mongolia 27918 A 7 7
25 Mongolia 27919 T 7 7
26 Mongolia 27920 C 7 7
27 Mongolia 27921 A 7 7
28 Mongolia 27922 T 7 7
29 Mongolia 27923 C 7 7
30 Mongolia 27924 A 7 7
31 Mongolia 27925 C 7 7
32 Mongolia 27926 A 7 7
33 Mongolia 27927 A 7 7
34 Mongolia 27928 C 7 7
35 Mongolia 27929 T 7 7
36 Mongolia 27930 G 7 7
37 Mongolia 27931 T 7 7
38 Mongolia 27932 A 7 7
39 Mongolia 27933 G 7 7
40 Mongolia 27934 C 7 7
41 Mongolia 27935 T 7 7
42 Mongolia 27936 G 7 7
43 Mongolia 27937 C 7 7
44 Mongolia 27938 A 7 7
45 Mongolia 27939 T 7 7
46 Mongolia 27940 T 7 7
47 Mongolia 27941 T 7 7
48 Mongolia 27942 C 7 7
49 Mongolia 27943 A 7 7
50 Mongolia 27944 C 7 7
51 Mongolia 27945 C 7 7
52 Mongolia 27946 A 7 7
53 Mongolia 27947 A 7 7
54 Mongolia 27948 G 7 7
55 Mongolia 27949 A 7 7
56 Mongolia 27950 A 7 7
57 Mongolia 27951 T 7 7
58 Mongolia 27952 G 7 7
59 Mongolia 27953 T 7 7
60 Mongolia 27954 A 7 7
61 Mongolia 27955 G 7 7
62 Mongolia 27956 T 7 7
63 Mongolia 27957 T 7 7
64 Mongolia 27958 T 7 7
65 Mongolia 27959 A 7 7
66 Mongolia 27960 C 7 7
67 Mongolia 27961 A 7 7
68 Mongolia 27962 G 7 7
69 Mongolia 27963 T 7 7
70 Mongolia 27964 C 7 7
71 Mongolia 27965 A 7 7
72 Mongolia 27966 T 7 7
73 Mongolia 27967 G 7 7
74 Mongolia 27968 T 7 7
75 Mongolia 27969 A 7 7
76 Mongolia 27970 C 7 7
77 Mongolia 27971 T 7 7
78 Mongolia 27972 C 7 7
79 Mongolia 27973 A 7 7
80 Mongolia 27974 A 7 7
81 Mongolia 27975 C 7 7
82 Mongolia 27976 A 7 7
83 Mongolia 27977 T 7 7
84 Mongolia 27978 C 7 7
85 Mongolia 27979 A 7 7
86 Mongolia 27980 A 7 7
87 Mongolia 27981 C 7 7
88 Mongolia 27982 C 7 7
89 Mongolia 27983 A 7 7
90 Mongolia 27984 T 7 7
91 Mongolia 27985 A 7 7
92 Mongolia 27986 T 7 7
93 Mongolia 27987 G 7 7
94 Mongolia 27988 T 7 7
95 Mongolia 27989 A 7 7
96 Mongolia 27990 G 7 7
97 Mongolia 27991 T 7 7
98 Mongolia 27992 T 7 7
99 Mongolia 27993 G 7 7
100 Mongolia 27994 A 7 7
101 Mongolia 27995 T 7 7
102 Mongolia 27996 G 7 7
103 Mongolia 27997 A 7 7
104 Mongolia 27998 C 7 7
105 Mongolia 27999 C 7 7
106 Mongolia 28000 C 7 7
107 Mongolia 28001 G 7 7
108 Mongolia 28002 T 7 7
109 Mongolia 28003 G 7 7
110 Mongolia 28004 T 7 7
111 Mongolia 28005 C 7 7
112 Mongolia 28006 C 7 7
113 Mongolia 28007 T 7 7
114 Mongolia 28008 A 7 7
115 Mongolia 28009 T 7 7
116 Mongolia 28010 T 7 7
117 Mongolia 28011 C 7 7
118 Mongolia 28012 A 7 7
119 Mongolia 28013 C 7 7
120 Mongolia 28014 T 7 7
121 Mongolia 28015 T 7 7
122 Mongolia 28016 C 7 7
123 Mongolia 28017 T 7 7
124 Mongolia 28018 A 7 7
125 Mongolia 28019 T 7 7
126 Mongolia 28020 T 7 7
127 Mongolia 28021 C 7 7
128 Mongolia 28022 T 7 7
129 Mongolia 28023 A 7 7
130 Mongolia 28024 A 7 7
131 Mongolia 28025 A 7 7
132 Mongolia 28026 T 7 7
133 Mongolia 28027 G 7 7
134 Mongolia 28028 G 7 7
135 Mongolia 28029 T 7 7
136 Mongolia 28030 A 7 7
137 Mongolia 28031 T 7 7
138 Mongolia 28032 A 7 7
139 Mongolia 28033 T 7 7
140 Mongolia 28034 T 7 7
141 Mongolia 28035 A 7 7
142 Mongolia 28036 G 7 7
143 Mongolia 28037 A 7 7
144 Mongolia 28038 G 7 7
145 Mongolia 28039 T 7 7
146 Mongolia 28040 A 7 7
147 Mongolia 28041 G 7 7
148 Mongolia 28042 G 7 7
149 Mongolia 28043 A 7 7
150 Mongolia 28044 G 7 7
151 Mongolia 28045 C 7 7
152 Mongolia 28046 T 7 7
153 Mongolia 28047 A 7 7
154 Mongolia 28048 G 7 7
155 Mongolia 28049 A 7 7
156 Mongolia 28050 A 7 7
157 Mongolia 28051 A 7 7
158 Mongolia 28052 A 7 7
159 Mongolia 28053 T 7 7
160 Mongolia 28054 C 7 7
161 Mongolia 28055 A 7 7
162 Mongolia 28056 G 7 7
163 Mongolia 28057 C 7 7
164 Mongolia 28058 A 7 7
165 Mongolia 28059 C 7 7
166 Mongolia 28060 C 7 7
167 Mongolia 28061 T 7 7
168 Mongolia 28062 T 7 7
169 Mongolia 28063 T 7 7
170 Mongolia 28064 A 7 7
171 Mongolia 28065 A 7 7
172 Mongolia 28066 T 7 7
173 Mongolia 28067 T 7 7
174 Mongolia 28068 G 7 7
175 Mongolia 28069 A 7 7
176 Mongolia 28070 A 7 7
177 Mongolia 28071 T 7 7
178 Mongolia 28072 T 7 7
179 Mongolia 28073 G 7 7
180 Mongolia 28074 T 7 7
181 Mongolia 28075 G 7 7
182 Mongolia 28076 C 7 7
183 Mongolia 28077 G 7 7
184 Mongolia 28078 T 7 7
185 Mongolia 28079 G 7 7
186 Mongolia 28080 G 7 7
187 Mongolia 28081 A 7 7
188 Mongolia 28082 T 7 7
189 Mongolia 28083 G 7 7
190 Mongolia 28084 A 7 7
191 Mongolia 28085 G 7 7
192 Mongolia 28086 G 7 7
193 Mongolia 28087 C 7 7
194 Mongolia 28088 T 7 7
195 Mongolia 28089 G 7 7
196 Mongolia 28090 G 7 7
197 Mongolia 28091 T 7 7
198 Mongolia 28092 T 7 7
199 Mongolia 28093 C 7 7
200 Mongolia 28094 T 7 7
201 Mongolia 28095 A 7 7
202 Mongolia 28096 A 7 7
203 Mongolia 28097 A 7 7
204 Mongolia 28098 T 7 7
205 Mongolia 28099 C 7 7
206 Mongolia 28100 A 7 7
207 Mongolia 28101 C 7 7
208 Mongolia 28102 C 7 7
209 Mongolia 28103 C 7 7
210 Mongolia 28104 A 7 7
211 Mongolia 28105 T 7 7
212 Mongolia 28106 T 7 7
213 Mongolia 28107 C 7 7
214 Mongolia 28108 A 7 7
215 Mongolia 28109 G 7 7
216 Mongolia 28110 T 7 7
217 Mongolia 28111 A 7 7
218 Mongolia 28112 C 7 7
219 Mongolia 28113 A 7 7
220 Mongolia 28114 T 7 7
221 Mongolia 28115 C 7 7
222 Mongolia 28116 G 7 7
223 Mongolia 28117 A 7 7
224 Mongolia 28118 T 7 7
225 Mongolia 28119 A 7 7
226 Mongolia 28120 T 7 7
227 Mongolia 28121 C 7 7
228 Mongolia 28122 G 7 7
229 Mongolia 28123 G 7 7
230 Mongolia 28124 T 7 7
231 Mongolia 28125 A 7 7
232 Mongolia 28126 A 7 7
233 Mongolia 28127 T 7 7
234 Mongolia 28128 T 7 7
235 Mongolia 28129 A 7 7
236 Mongolia 28130 T 7 7
237 Mongolia 28131 A 7 7
238 Mongolia 28132 C 7 7
239 Mongolia 28133 A 7 7
240 Mongolia 28134 G 7 7
241 Mongolia 28135 T 7 7
242 Mongolia 28136 T 7 7
243 Mongolia 28137 T 7 7
244 Mongolia 28138 C 7 7
245 Mongolia 28139 C 7 7
246 Mongolia 28140 T 7 7
247 Mongolia 28141 G 7 7
248 Mongolia 28142 T 7 7
249 Mongolia 28143 T 7 7
250 Mongolia 28144 T 7 7
251 Mongolia 28145 A 7 7
252 Mongolia 28146 C 7 7
253 Mongolia 28147 C 7 7
254 Mongolia 28148 T 7 7
255 Mongolia 28149 T 7 7
256 Mongolia 28150 T 7 7
257 Mongolia 28151 T 7 7
258 Mongolia 28152 A 7 7
259 Mongolia 28153 C 7 7
260 Mongolia 28154 A 7 7
261 Mongolia 28155 A 7 7
262 Mongolia 28156 T 7 7
263 Mongolia 28157 T 7 7
264 Mongolia 28158 A 7 7
265 Mongolia 28159 A 7 7
266 Mongolia 28160 T 7 7
267 Mongolia 28161 T 7 7
268 Mongolia 28162 G 7 7
269 Mongolia 28163 C 7 7
270 Mongolia 28164 C 7 7
271 Mongolia 28165 A 7 7
272 Mongolia 28166 G 7 7
273 Mongolia 28167 G 7 7
274 Mongolia 28168 A 7 7
275 Mongolia 28169 A 7 7
276 Mongolia 28170 C 7 7
277 Mongolia 28171 C 7 7
278 Mongolia 28172 T 7 7
279 Mongolia 28173 A 7 7
280 Mongolia 28174 A 7 7
281 Mongolia 28175 A 7 7
282 Mongolia 28176 T 7 7
283 Mongolia 28177 T 7 7
284 Mongolia 28178 G 7 7
285 Mongolia 28179 G 7 7
286 Mongolia 28180 G 7 7
287 Mongolia 28181 T 7 7
288 Mongolia 28182 A 7 7
289 Mongolia 28183 G 7 7
290 Mongolia 28184 T 7 7
291 Mongolia 28185 C 7 7
292 Mongolia 28186 T 7 7
293 Mongolia 28187 T 7 7
294 Mongolia 28188 G 7 7
295 Mongolia 28189 T 7 7
296 Mongolia 28190 A 7 7
297 Mongolia 28191 G 7 7
298 Mongolia 28192 T 7 7
299 Mongolia 28193 G 7 7
300 Mongolia 28194 C 7 7
301 Mongolia 28195 G 7 7
302 Mongolia 28196 T 7 7
303 Mongolia 28197 T 7 7
304 Mongolia 28198 G 7 7
305 Mongolia 28199 T 7 7
306 Mongolia 28200 T 7 7
307 Mongolia 28201 C 7 7
308 Mongolia 28202 G 7 7
309 Mongolia 28203 T 7 7
310 Mongolia 28204 T 7 7
311 Mongolia 28205 C 7 7
312 Mongolia 28206 T 7 7
313 Mongolia 28207 A 7 7
314 Mongolia 28208 T 7 7
315 Mongolia 28209 G 7 7
316 Mongolia 28210 A 7 7
317 Mongolia 28211 A 7 7
318 Mongolia 28212 G 7 7
319 Mongolia 28213 A 7 7
320 Mongolia 28214 C 7 7
321 Mongolia 28215 T 7 7
322 Mongolia 28216 T 7 7
323 Mongolia 28217 T 7 7
324 Mongolia 28218 T 7 7
325 Mongolia 28219 T 7 7
326 Mongolia 28220 A 7 7
327 Mongolia 28221 G 7 7
328 Mongolia 28222 A 7 7
329 Mongolia 28223 G 7 7
330 Mongolia 28224 T 7 7
331 Mongolia 28225 A 7 7
332 Mongolia 28226 T 7 7
333 Mongolia 28227 C 7 7
334 Mongolia 28228 A 7 7
335 Mongolia 28229 T 7 7
336 Mongolia 28230 G 7 7
337 Mongolia 28231 A 7 7
338 Mongolia 28232 C 7 7
339 Mongolia 28233 G 7 7
340 Mongolia 28234 T 7 7
341 Mongolia 28235 T 7 7
342 Mongolia 28236 C 7 7
343 Mongolia 28237 G 7 7
344 Mongolia 28238 T 7 7
345 Mongolia 28239 G 7 7
346 Mongolia 28240 T 7 7
347 Mongolia 28241 T 7 7
348 Mongolia 28242 G 7 7
349 Mongolia 28243 T 7 7
350 Mongolia 28244 T 7 7
351 Mongolia 28245 T 7 7
352 Mongolia 28246 T 7 7
353 Mongolia 28247 A 7 7
354 Mongolia 28248 G 7 7
355 Mongolia 28249 A 7 7
356 Mongolia 28250 T 7 7
357 Mongolia 28251 T 7 7
358 Mongolia 28252 T 7 7
359 Mongolia 28253 C 7 7
360 Mongolia 28254 A 7 7
361 Mongolia 28255 T 7 7
362 Mongolia 28256 C 7 7
363 Mongolia 28257 T 7 7
364 Mongolia 28258 A 7 7
365 Mongolia 28259 A 7 7