National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 27894 A 8 8
1 Moldova 27895 T 8 8
2 Moldova 27896 G 8 8
3 Moldova 27897 A 8 8
4 Moldova 27898 A 8 8
5 Moldova 27899 A 8 8
6 Moldova 27900 T 8 8
7 Moldova 27901 T 8 8
8 Moldova 27902 T 8 8
9 Moldova 27903 C 8 8
10 Moldova 27904 T 8 8
11 Moldova 27905 T 8 8
12 Moldova 27906 G 8 8
13 Moldova 27907 T 8 8
14 Moldova 27908 T 8 8
15 Moldova 27909 T 8 8
16 Moldova 27910 T 8 8
17 Moldova 27911 C 8 8
18 Moldova 27912 T 8 8
19 Moldova 27913 T 8 8
20 Moldova 27914 A 8 8
21 Moldova 27915 G 8 8
22 Moldova 27916 G 8 8
23 Moldova 27917 A 8 8
24 Moldova 27918 A 8 8
25 Moldova 27919 T 8 8
26 Moldova 27920 C 8 8
27 Moldova 27921 A 8 8
28 Moldova 27922 T 8 8
29 Moldova 27923 C 8 8
30 Moldova 27924 A 8 8
31 Moldova 27925 C 8 8
32 Moldova 27926 A 8 8
33 Moldova 27927 A 8 8
34 Moldova 27928 C 8 8
35 Moldova 27929 T 8 8
36 Moldova 27930 G 8 8
37 Moldova 27931 T 8 8
38 Moldova 27932 A 8 8
39 Moldova 27933 G 8 8
40 Moldova 27934 C 8 8
41 Moldova 27935 T 8 8
42 Moldova 27936 G 8 8
43 Moldova 27937 C 8 8
44 Moldova 27938 A 8 8
45 Moldova 27939 T 8 8
46 Moldova 27940 T 8 8
47 Moldova 27941 T 8 8
48 Moldova 27942 C 8 8
49 Moldova 27943 A 8 8
50 Moldova 27944 C 8 8
51 Moldova 27945 C 8 8
52 Moldova 27946 A 8 8
53 Moldova 27947 A 8 8
54 Moldova 27948 G 8 8
55 Moldova 27949 A 8 8
56 Moldova 27950 A 8 8
57 Moldova 27951 T 8 8
58 Moldova 27952 G 8 8
59 Moldova 27953 T 8 8
60 Moldova 27954 A 8 8
61 Moldova 27955 G 8 8
62 Moldova 27956 T 8 8
63 Moldova 27957 T 8 8
64 Moldova 27958 T 8 8
65 Moldova 27959 A 8 8
66 Moldova 27960 C 8 8
67 Moldova 27961 A 8 8
68 Moldova 27962 G 8 8
69 Moldova 27963 T 8 8
70 Moldova 27964 C 8 8
71 Moldova 27965 A 8 8
72 Moldova 27966 T 8 8
73 Moldova 27967 G 8 8
74 Moldova 27968 T 8 8
75 Moldova 27969 A 8 8
76 Moldova 27970 C 8 8
77 Moldova 27971 T 8 8
78 Moldova 27972 C 8 8
79 Moldova 27973 A 8 8
80 Moldova 27974 A 8 8
81 Moldova 27975 C 8 8
82 Moldova 27976 A 8 8
83 Moldova 27977 T 8 8
84 Moldova 27978 C 8 8
85 Moldova 27979 A 8 8
86 Moldova 27980 A 8 8
87 Moldova 27981 C 8 8
88 Moldova 27982 C 8 8
89 Moldova 27983 A 8 8
90 Moldova 27984 T 8 8
91 Moldova 27985 A 8 8
92 Moldova 27986 T 8 8
93 Moldova 27987 G 8 8
94 Moldova 27988 T 8 8
95 Moldova 27989 A 8 8
96 Moldova 27990 G 8 8
97 Moldova 27991 T 8 8
98 Moldova 27992 T 8 8
99 Moldova 27993 G 8 8
100 Moldova 27994 A 8 8
101 Moldova 27995 T 8 8
102 Moldova 27996 G 8 8
103 Moldova 27997 A 8 8
104 Moldova 27998 C 8 8
105 Moldova 27999 C 8 8
106 Moldova 28000 C 8 8
107 Moldova 28001 G 8 8
108 Moldova 28002 T 8 8
109 Moldova 28003 G 8 8
110 Moldova 28004 T 8 8
111 Moldova 28005 C 8 8
112 Moldova 28006 C 8 8
113 Moldova 28007 T 8 8
114 Moldova 28008 A 8 8
115 Moldova 28009 T 8 8
116 Moldova 28010 T 8 8
117 Moldova 28011 C 8 8
118 Moldova 28012 A 8 8
119 Moldova 28013 C 8 8
120 Moldova 28014 T 8 8
121 Moldova 28015 T 8 8
122 Moldova 28016 C 8 8
123 Moldova 28017 T 8 8
124 Moldova 28018 A 8 8
125 Moldova 28019 T 8 8
126 Moldova 28020 T 8 8
127 Moldova 28021 C 8 8
128 Moldova 28022 T 8 8
129 Moldova 28023 A 8 8
130 Moldova 28024 A 8 8
131 Moldova 28025 A 8 8
132 Moldova 28026 T 8 8
133 Moldova 28027 G 8 8
134 Moldova 28028 G 8 8
135 Moldova 28029 T 8 8
136 Moldova 28030 A 8 8
137 Moldova 28031 T 8 8
138 Moldova 28032 A 8 8
139 Moldova 28033 T 8 8
140 Moldova 28034 T 8 8
141 Moldova 28035 A 8 8
142 Moldova 28036 G 8 8
143 Moldova 28037 A 8 8
144 Moldova 28038 G 8 8
145 Moldova 28039 T 8 8
146 Moldova 28040 A 8 8
147 Moldova 28041 G 8 8
148 Moldova 28042 G 8 8
149 Moldova 28043 A 8 8
150 Moldova 28044 G 8 8
151 Moldova 28045 C 8 8
152 Moldova 28046 T 8 8
153 Moldova 28047 A 8 8
154 Moldova 28048 G 8 8
155 Moldova 28049 A 8 8
156 Moldova 28050 A 8 8
157 Moldova 28051 A 8 8
158 Moldova 28052 A 8 8
159 Moldova 28053 T 8 8
160 Moldova 28054 C 8 8
161 Moldova 28055 A 8 8
162 Moldova 28056 G 8 8
163 Moldova 28057 C 8 8
164 Moldova 28058 A 8 8
165 Moldova 28059 C 8 8
166 Moldova 28060 C 8 8
167 Moldova 28061 T 8 8
168 Moldova 28062 T 8 8
169 Moldova 28063 T 8 8
170 Moldova 28064 A 8 8
171 Moldova 28065 A 8 8
172 Moldova 28066 T 8 8
173 Moldova 28067 T 8 8
174 Moldova 28068 G 8 8
175 Moldova 28069 A 8 8
176 Moldova 28070 A 8 8
177 Moldova 28071 T 8 8
178 Moldova 28072 T 8 8
179 Moldova 28073 G 8 8
180 Moldova 28074 T 8 8
181 Moldova 28075 G 8 8
182 Moldova 28076 C 8 8
183 Moldova 28077 G 8 8
184 Moldova 28078 T 8 8
185 Moldova 28079 G 8 8
186 Moldova 28080 G 8 8
187 Moldova 28081 A 8 8
188 Moldova 28082 T 8 8
189 Moldova 28083 G 8 8
190 Moldova 28084 A 8 8
191 Moldova 28085 G 8 8
192 Moldova 28086 G 8 8
193 Moldova 28087 C 8 8
194 Moldova 28088 T 8 8
195 Moldova 28089 G 8 8
196 Moldova 28090 G 8 8
197 Moldova 28091 T 8 8
198 Moldova 28092 T 8 8
199 Moldova 28093 C 8 8
200 Moldova 28094 T 8 8
201 Moldova 28095 A 8 8
202 Moldova 28096 A 8 8
203 Moldova 28097 A 8 8
204 Moldova 28098 T 8 8
205 Moldova 28099 C 8 8
206 Moldova 28100 A 8 8
207 Moldova 28101 C 8 8
208 Moldova 28102 C 8 8
209 Moldova 28103 C 8 8
210 Moldova 28104 A 8 8
211 Moldova 28105 T 8 8
212 Moldova 28106 T 8 8
213 Moldova 28107 C 8 8
214 Moldova 28108 A 8 8
215 Moldova 28109 G 8 8
216 Moldova 28110 T 8 8
217 Moldova 28111 A 8 8
218 Moldova 28112 C 8 8
219 Moldova 28113 A 8 8
220 Moldova 28114 T 8 8
221 Moldova 28115 C 8 8
222 Moldova 28116 G 8 8
223 Moldova 28117 A 8 8
224 Moldova 28118 T 8 8
225 Moldova 28119 A 8 8
226 Moldova 28120 T 8 8
227 Moldova 28121 C 8 8
228 Moldova 28122 G 8 8
229 Moldova 28123 G 8 8
230 Moldova 28124 T 8 8
231 Moldova 28125 A 8 8
232 Moldova 28126 A 8 8
233 Moldova 28127 T 8 8
234 Moldova 28128 T 8 8
235 Moldova 28129 A 8 8
236 Moldova 28130 T 8 8
237 Moldova 28131 A 8 8
238 Moldova 28132 C 8 8
239 Moldova 28133 A 8 8
240 Moldova 28134 G 8 8
241 Moldova 28135 T 8 8
242 Moldova 28136 T 8 8
243 Moldova 28137 T 8 8
244 Moldova 28138 C 8 8
245 Moldova 28139 C 8 8
246 Moldova 28140 T 8 8
247 Moldova 28141 G 8 8
248 Moldova 28142 T 8 8
249 Moldova 28143 T 8 8
250 Moldova 28144 T 8 8
251 Moldova 28145 A 8 8
252 Moldova 28146 C 8 8
253 Moldova 28147 C 8 8
254 Moldova 28148 T 8 8
255 Moldova 28149 T 8 8
256 Moldova 28150 T 8 8
257 Moldova 28151 T 8 8
258 Moldova 28152 A 8 8
259 Moldova 28153 C 8 8
260 Moldova 28154 A 8 8
261 Moldova 28155 A 8 8
262 Moldova 28156 T 8 8
263 Moldova 28157 T 8 8
264 Moldova 28158 A 8 8
265 Moldova 28159 A 8 8
266 Moldova 28160 T 8 8
267 Moldova 28161 T 8 8
268 Moldova 28162 G 8 8
269 Moldova 28163 C 8 8
270 Moldova 28164 C 8 8
271 Moldova 28165 A 8 8
272 Moldova 28166 G 8 8
273 Moldova 28167 G 8 8
274 Moldova 28168 A 8 8
275 Moldova 28169 A 8 8
276 Moldova 28170 C 8 8
277 Moldova 28171 C 8 8
278 Moldova 28172 T 8 8
279 Moldova 28173 A 8 8
280 Moldova 28174 A 8 8
281 Moldova 28175 A 8 8
282 Moldova 28176 T 8 8
283 Moldova 28177 T 8 8
284 Moldova 28178 G 8 8
285 Moldova 28179 G 8 8
286 Moldova 28180 G 8 8
287 Moldova 28181 T 8 8
288 Moldova 28182 A 8 8
289 Moldova 28183 G 8 8
290 Moldova 28184 T 8 8
291 Moldova 28185 C 8 8
292 Moldova 28186 T 8 8
293 Moldova 28187 T 8 8
294 Moldova 28188 G 8 8
295 Moldova 28189 T 8 8
296 Moldova 28190 A 8 8
297 Moldova 28191 G 8 8
298 Moldova 28192 T 8 8
299 Moldova 28193 G 8 8
300 Moldova 28194 C 8 8
301 Moldova 28195 G 8 8
302 Moldova 28196 T 8 8
303 Moldova 28197 T 8 8
304 Moldova 28198 G 8 8
305 Moldova 28199 T 8 8
306 Moldova 28200 T 8 8
307 Moldova 28201 C 8 8
308 Moldova 28202 G 8 8
309 Moldova 28203 T 8 8
310 Moldova 28204 T 8 8
311 Moldova 28205 C 8 8
312 Moldova 28206 T 8 8
313 Moldova 28207 A 8 8
314 Moldova 28208 T 8 8
315 Moldova 28209 G 8 8
316 Moldova 28210 A 8 8
317 Moldova 28211 A 8 8
318 Moldova 28212 G 8 8
319 Moldova 28213 A 8 8
320 Moldova 28214 C 8 8
321 Moldova 28215 T 8 8
322 Moldova 28216 T 8 8
323 Moldova 28217 T 8 8
324 Moldova 28218 T 8 8
325 Moldova 28219 T 8 8
326 Moldova 28220 A 8 8
327 Moldova 28221 G 8 8
328 Moldova 28222 A 8 8
329 Moldova 28223 G 8 8
330 Moldova 28224 T 8 8
331 Moldova 28225 A 8 8
332 Moldova 28226 T 8 8
333 Moldova 28227 C 8 8
334 Moldova 28228 A 8 8
335 Moldova 28229 T 8 8
336 Moldova 28230 G 8 8
337 Moldova 28231 A 8 8
338 Moldova 28232 C 8 8
339 Moldova 28233 G 8 8
340 Moldova 28234 T 8 8
341 Moldova 28235 T 8 8
342 Moldova 28236 C 8 8
343 Moldova 28237 G 8 8
344 Moldova 28238 T 8 8
345 Moldova 28239 G 8 8
346 Moldova 28240 T 8 8
347 Moldova 28241 T 8 8
348 Moldova 28242 G 8 8
349 Moldova 28243 T 8 8
350 Moldova 28244 T 8 8
351 Moldova 28245 T 8 8
352 Moldova 28246 T 8 8
353 Moldova 28247 A 8 8
354 Moldova 28248 G 8 8
355 Moldova 28249 A 8 8
356 Moldova 28250 T 8 8
357 Moldova 28251 T 8 8
358 Moldova 28252 T 8 8
359 Moldova 28253 C 8 8
360 Moldova 28254 A 8 8
361 Moldova 28255 T 8 8
362 Moldova 28256 C 8 8
363 Moldova 28257 T 8 8
364 Moldova 28258 A 8 8
365 Moldova 28259 A 8 8