National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 1                                 2    
C     21   2     1                              
D     22     1                                 1
E     18     1                                  
F     24         2         1                    
G     15                                        
H     12             1                          
I     30               3                   1    
K 1   15                                        
L     30         2                     1        
M     3                                        
N     6                                        
P     21                         1              
Q 1   18                                        
R     12               1                        
S 2   27         1         1                    
T     15               1                        
V     36                   2               1    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 27894 A 585 585
1 Mexico 27895 T 585 585
2 Mexico 27896 G 585 585
3 Mexico 27897 A 585 585
4 Mexico 27898 A 585 585
5 Mexico 27899 A 585 585
6 Mexico 27900 T 585 585
7 Mexico 27901 T 585 585
8 Mexico 27902 T 585 585
9 Mexico 27903 C T 585 582 Leu4Phe
10 Mexico 27904 T 585 585
11 Mexico 27905 T 585 585
12 Mexico 27906 G 585 585
13 Mexico 27907 T 585 585
14 Mexico 27908 T 585 585
15 Mexico 27909 T 585 585
16 Mexico 27910 T 585 585
17 Mexico 27911 C T 585 584 Phe6Phe
18 Mexico 27912 T 585 585
19 Mexico 27913 T 585 585
20 Mexico 27914 A 585 585
21 Mexico 27915 G 585 585
22 Mexico 27916 G 585 585
23 Mexico 27917 A 585 585
24 Mexico 27918 A 585 585
25 Mexico 27919 T 585 585
26 Mexico 27920 C T 585 584 Ile9Ile
27 Mexico 27921 A G 585 584 Ile10Val
28 Mexico 27922 T 585 585
29 Mexico 27923 C 585 585
30 Mexico 27924 A 585 585
31 Mexico 27925 C T 585 584 Thr11Ile
32 Mexico 27926 A 585 585
33 Mexico 27927 A 585 585
34 Mexico 27928 C 585 585
35 Mexico 27929 T 585 585
36 Mexico 27930 G 585 585
37 Mexico 27931 T 585 585
38 Mexico 27932 A 585 585
39 Mexico 27933 G 585 585
40 Mexico 27934 C 585 585
41 Mexico 27935 T 585 585
42 Mexico 27936 G 585 585
43 Mexico 27937 C 585 585
44 Mexico 27938 A T 585 584 Ala15Ala
45 Mexico 27939 T 585 585
46 Mexico 27940 T 585 585
47 Mexico 27941 T 585 585
48 Mexico 27942 C 585 585
49 Mexico 27943 A 585 585
50 Mexico 27944 C T 585 584 His17His
51 Mexico 27945 C 585 585
52 Mexico 27946 A 585 585
53 Mexico 27947 A 585 585
54 Mexico 27948 G 585 585
55 Mexico 27949 A 585 585
56 Mexico 27950 A 585 585
57 Mexico 27951 T 585 585
58 Mexico 27952 G 585 585
59 Mexico 27953 T 585 585
60 Mexico 27954 A 585 585
61 Mexico 27955 G 585 585
62 Mexico 27956 T 585 585
63 Mexico 27957 T 585 585
64 Mexico 27958 T 585 585
65 Mexico 27959 A 585 585
66 Mexico 27960 C 585 585
67 Mexico 27961 A 585 585
68 Mexico 27962 G 586 586
69 Mexico 27963 T 586 586
70 Mexico 27964 C T 586 577 Ser24Leu
71 Mexico 27965 A 586 586
72 Mexico 27966 T 586 586
73 Mexico 27967 G 586 586
74 Mexico 27968 T 586 586
75 Mexico 27969 A 586 586
76 Mexico 27970 C 586 586
77 Mexico 27971 T 586 586
78 Mexico 27972 C T 586 585 Gln27*
79 Mexico 27973 A 586 586
80 Mexico 27974 A 586 586
81 Mexico 27975 C 586 586
82 Mexico 27976 A 586 586
83 Mexico 27977 T 586 586
84 Mexico 27978 C 586 586
85 Mexico 27979 A 586 586
86 Mexico 27980 A 586 586
87 Mexico 27981 C 586 586
88 Mexico 27982 C 586 586
89 Mexico 27983 A 586 586
90 Mexico 27984 T 586 586
91 Mexico 27985 A 586 586
92 Mexico 27986 T 586 586
93 Mexico 27987 G T 586 581 Val32Leu
94 Mexico 27988 T 586 586
95 Mexico 27989 A 586 586
96 Mexico 27990 G 586 586
97 Mexico 27991 T 586 586
98 Mexico 27992 T 586 586
99 Mexico 27993 G 586 586
100 Mexico 27994 A 586 586
101 Mexico 27995 T C 586 585 Asp34Asp
102 Mexico 27996 G T 586 585 Asp35Tyr
103 Mexico 27997 A 586 586
104 Mexico 27998 C 586 586
105 Mexico 27999 C 586 586
106 Mexico 28000 C 586 586
107 Mexico 28001 G T 586 582 Pro36Pro
108 Mexico 28002 T 586 586
109 Mexico 28003 G 586 586
110 Mexico 28004 T 586 586
111 Mexico 28005 C 586 586
112 Mexico 28006 C 586 586
113 Mexico 28007 T 586 586
114 Mexico 28008 A 586 586
115 Mexico 28009 T 586 586
116 Mexico 28010 T 586 586
117 Mexico 28011 C 586 586
118 Mexico 28012 A 586 585
119 Mexico 28013 C 586 585
120 Mexico 28014 T 586 585
121 Mexico 28015 T 586 585
122 Mexico 28016 C 586 584
123 Mexico 28017 T 586 584
124 Mexico 28018 A 586 584
125 Mexico 28019 T 586 584
126 Mexico 28020 T 586 584
127 Mexico 28021 C 586 584
128 Mexico 28022 T 586 584
129 Mexico 28023 A 586 584
130 Mexico 28024 A 586 584
131 Mexico 28025 A 586 584
132 Mexico 28026 T 586 584
133 Mexico 28027 G 586 583
134 Mexico 28028 G 586 584
135 Mexico 28029 T 586 584
136 Mexico 28030 A 586 585
137 Mexico 28031 T 586 585
138 Mexico 28032 A 586 585
139 Mexico 28033 T 586 585
140 Mexico 28034 T 586 585
141 Mexico 28035 A 586 585
142 Mexico 28036 G 586 585
143 Mexico 28037 A 586 585
144 Mexico 28038 G 586 585
145 Mexico 28039 T 586 585
146 Mexico 28040 A 586 585
147 Mexico 28041 G 586 585
148 Mexico 28042 G 586 585
149 Mexico 28043 A 586 585
150 Mexico 28044 G 586 585
151 Mexico 28045 C 586 585
152 Mexico 28046 T 586 586
153 Mexico 28047 A 586 586
154 Mexico 28048 G T 586 585 Arg52Ile
155 Mexico 28049 A 586 586
156 Mexico 28050 A 586 586
157 Mexico 28051 A 586 586
158 Mexico 28052 A 586 586
159 Mexico 28053 T 586 586
160 Mexico 28054 C G,A 586 584 Ser54*-p.Ser54*
161 Mexico 28055 A 586 586
162 Mexico 28056 G 586 586
163 Mexico 28057 C T 586 585 Ala55Val
164 Mexico 28058 A 586 586
165 Mexico 28059 C 586 586
166 Mexico 28060 C 586 586
167 Mexico 28061 T 586 586
168 Mexico 28062 T 586 585
169 Mexico 28063 T 586 585
170 Mexico 28064 A 586 586
171 Mexico 28065 A 587 587
172 Mexico 28066 T 587 587
173 Mexico 28067 T 587 587
174 Mexico 28068 G 587 587
175 Mexico 28069 A 587 587
176 Mexico 28070 A 587 587
177 Mexico 28071 T 587 587
178 Mexico 28072 T 587 587
179 Mexico 28073 G 587 587
180 Mexico 28074 T 587 587
181 Mexico 28075 G 587 587
182 Mexico 28076 C T 587 586 Cys61Cys
183 Mexico 28077 G T 587 586 Val62Leu
184 Mexico 28078 T 587 587
185 Mexico 28079 G T 587 586 Val62Val
186 Mexico 28080 G 588 588
187 Mexico 28081 A 588 588
188 Mexico 28082 T 588 588
189 Mexico 28083 G 588 588
190 Mexico 28084 A 588 588
191 Mexico 28085 G T 588 587 Glu64Asp
192 Mexico 28086 G 588 588
193 Mexico 28087 C T 588 585 Ala65Val
194 Mexico 28088 T 588 588
195 Mexico 28089 G 588 588
196 Mexico 28090 G 588 588
197 Mexico 28091 T 588 588
198 Mexico 28092 T 588 588
199 Mexico 28093 C T 588 587 Ser67Phe
200 Mexico 28094 T 588 588
201 Mexico 28095 A T 588 587 Lys68*
202 Mexico 28096 A 588 588
203 Mexico 28097 A 588 588
204 Mexico 28098 T 588 588
205 Mexico 28099 C 588 588
206 Mexico 28100 A 588 588
207 Mexico 28101 C 588 588
208 Mexico 28102 C 588 588
209 Mexico 28103 C 588 588
210 Mexico 28104 A 588 588
211 Mexico 28105 T 596 596
212 Mexico 28106 T 596 596
213 Mexico 28107 C 596 596
214 Mexico 28108 A 596 596
215 Mexico 28109 G 596 596
216 Mexico 28110 T 596 596
217 Mexico 28111 A G 596 595 Tyr73Cys
218 Mexico 28112 C 596 596
219 Mexico 28113 A 595 595
220 Mexico 28114 T 595 595
221 Mexico 28115 C 595 595
222 Mexico 28116 G 595 595
223 Mexico 28117 A 595 595
224 Mexico 28118 T 595 595
225 Mexico 28119 A 595 595
226 Mexico 28120 T 595 595
227 Mexico 28121 C A 595 594 Ile76Ile
228 Mexico 28122 G 595 595
229 Mexico 28123 G 595 595
230 Mexico 28124 T 595 595
231 Mexico 28125 A 595 595
232 Mexico 28126 A 595 595
233 Mexico 28127 T 595 595
234 Mexico 28128 T 595 595
235 Mexico 28129 A 595 595
236 Mexico 28130 T 595 595
237 Mexico 28131 A 595 595
238 Mexico 28132 C 595 595
239 Mexico 28133 A 595 595
240 Mexico 28134 G 595 595
241 Mexico 28135 T 595 595
242 Mexico 28136 T 595 595
243 Mexico 28137 T 595 595
244 Mexico 28138 C 595 595
245 Mexico 28139 C 595 595
246 Mexico 28140 T 595 595
247 Mexico 28141 G 595 595
248 Mexico 28142 T 595 595
249 Mexico 28143 T 595 595
250 Mexico 28144 T C 595 579 Leu84Ser
251 Mexico 28145 A 595 595
252 Mexico 28146 C 595 595
253 Mexico 28147 C 595 595
254 Mexico 28148 T 595 595
255 Mexico 28149 T 595 595
256 Mexico 28150 T 595 595
257 Mexico 28151 T 595 595
258 Mexico 28152 A 595 595
259 Mexico 28153 C 595 595
260 Mexico 28154 A 595 595
261 Mexico 28155 A 595 595
262 Mexico 28156 T 595 595
263 Mexico 28157 T C 595 594 Ile88Ile
264 Mexico 28158 A 595 595
265 Mexico 28159 A 595 595
266 Mexico 28160 T 595 595
267 Mexico 28161 T 595 595
268 Mexico 28162 G 595 595
269 Mexico 28163 C 595 595
270 Mexico 28164 C 595 595
271 Mexico 28165 A 595 595
272 Mexico 28166 G 595 595
273 Mexico 28167 G 595 595
274 Mexico 28168 A 595 595
275 Mexico 28169 A 595 595
276 Mexico 28170 C 595 595
277 Mexico 28171 C 595 595
278 Mexico 28172 T 595 595
279 Mexico 28173 A 595 595
280 Mexico 28174 A 595 595
281 Mexico 28175 A 595 595
282 Mexico 28176 T 595 595
283 Mexico 28177 T 595 595
284 Mexico 28178 G T 595 593 Leu95Phe
285 Mexico 28179 G 595 595
286 Mexico 28180 G 595 595
287 Mexico 28181 T 595 595
288 Mexico 28182 A 595 595
289 Mexico 28183 G 595 595
290 Mexico 28184 T 595 595
291 Mexico 28185 C 595 595
292 Mexico 28186 T 595 595
293 Mexico 28187 T 595 595
294 Mexico 28188 G 595 595
295 Mexico 28189 T 595 595
296 Mexico 28190 A 595 595
297 Mexico 28191 G 595 595
298 Mexico 28192 T 595 595
299 Mexico 28193 G 595 595
300 Mexico 28194 C 595 595
301 Mexico 28195 G 595 595
302 Mexico 28196 T 595 595
303 Mexico 28197 T 595 595
304 Mexico 28198 G T 595 593 Cys102Phe
305 Mexico 28199 T C 595 593 Cys102Cys
306 Mexico 28200 T 595 595
307 Mexico 28201 C 595 595
308 Mexico 28202 G 595 595
309 Mexico 28203 T 595 595
310 Mexico 28204 T 595 595
311 Mexico 28205 C 595 595
312 Mexico 28206 T 595 595
313 Mexico 28207 A 596 596
314 Mexico 28208 T 596 596
315 Mexico 28209 G 596 596
316 Mexico 28210 A 596 596
317 Mexico 28211 A 596 596
318 Mexico 28212 G 596 596
319 Mexico 28213 A 596 596
320 Mexico 28214 C 596 596
321 Mexico 28215 T 596 596
322 Mexico 28216 T 596 596
323 Mexico 28217 T 596 596
324 Mexico 28218 T 596 596
325 Mexico 28219 T 596 596
326 Mexico 28220 A 596 596
327 Mexico 28221 G 596 596
328 Mexico 28222 A 596 596
329 Mexico 28223 G 596 596
330 Mexico 28224 T 596 596
331 Mexico 28225 A 596 596
332 Mexico 28226 T 596 596
333 Mexico 28227 C 596 596
334 Mexico 28228 A 596 596
335 Mexico 28229 T 596 596
336 Mexico 28230 G 596 596
337 Mexico 28231 A 596 596
338 Mexico 28232 C 596 596
339 Mexico 28233 G 596 596
340 Mexico 28234 T 596 596
341 Mexico 28235 T 596 596
342 Mexico 28236 C 596 596
343 Mexico 28237 G 596 596
344 Mexico 28238 T 596 596
345 Mexico 28239 G 596 596
346 Mexico 28240 T 596 596
347 Mexico 28241 T 596 596
348 Mexico 28242 G 596 596
349 Mexico 28243 T 596 596
350 Mexico 28244 T 596 596
351 Mexico 28245 T 596 596
352 Mexico 28246 T 596 596
353 Mexico 28247 A 596 596
354 Mexico 28248 G 596 596
355 Mexico 28249 A 596 596
356 Mexico 28250 T 596 596
357 Mexico 28251 T 596 596
358 Mexico 28252 T 596 596
359 Mexico 28253 C T,G 596 591 Phe120Leu-p.Phe120Phe
360 Mexico 28254 A 596 596
361 Mexico 28255 T 596 596
362 Mexico 28256 C 596 596
363 Mexico 28257 T 596 596
364 Mexico 28258 A 596 596
365 Mexico 28259 A 596 596