National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   1    
C     21                               1       1
D     22                                        
E     18                 1                      
F     24         2                              
G 1   15       1   1                       1    
H     12             1     1                   2
I     30               1                        
K     15                                        
L     30         1         1                    
M     3                                        
N     6                                        
P     21                                        
Q 1   18             1           1              
R     12                                        
S     27                   1                    
T     15                 1       1       1      
V     36                   2                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 27894 A 230 230
1 Lithuania 27895 T 230 230
2 Lithuania 27896 G 230 230
3 Lithuania 27897 A 230 230
4 Lithuania 27898 A 230 230
5 Lithuania 27899 A 230 230
6 Lithuania 27900 T 230 230
7 Lithuania 27901 T 230 230
8 Lithuania 27902 T 230 230
9 Lithuania 27903 C 230 230
10 Lithuania 27904 T 230 230
11 Lithuania 27905 T 230 230
12 Lithuania 27906 G 230 230
13 Lithuania 27907 T 230 230
14 Lithuania 27908 T 230 230
15 Lithuania 27909 T 230 230
16 Lithuania 27910 T 230 230
17 Lithuania 27911 C T 230 192 Phe6Phe
18 Lithuania 27912 T C 230 229 Leu7Leu
19 Lithuania 27913 T 230 230
20 Lithuania 27914 A T 230 226 Leu7Phe
21 Lithuania 27915 G T 230 229 Gly8*
22 Lithuania 27916 G T,A 230 227 Gly8Val-p.Gly8Glu
23 Lithuania 27917 A T 230 229 Gly8Gly
24 Lithuania 27918 A 229 229
25 Lithuania 27919 T 229 229
26 Lithuania 27920 C T 229 228 Ile9Ile
27 Lithuania 27921 A 230 230
28 Lithuania 27922 T 230 230
29 Lithuania 27923 C 231 231
30 Lithuania 27924 A C 231 229 Thr11Pro
31 Lithuania 27925 C A 231 229 Thr11Lys
32 Lithuania 27926 A 231 231
33 Lithuania 27927 A 231 231
34 Lithuania 27928 C 231 231
35 Lithuania 27929 T A 231 230 Thr12Thr
36 Lithuania 27930 G T,C 231 228 Val13Leu-p.Val13Leu
37 Lithuania 27931 T 231 231
38 Lithuania 27932 A 232 232
39 Lithuania 27933 G 232 231
40 Lithuania 27934 C 232 231
41 Lithuania 27935 T 232 232
42 Lithuania 27936 G 232 232
43 Lithuania 27937 C 232 232
44 Lithuania 27938 A 232 232
45 Lithuania 27939 T 232 232
46 Lithuania 27940 T 232 232
47 Lithuania 27941 T 232 232
48 Lithuania 27942 C T 232 229 His17Tyr
49 Lithuania 27943 A T 232 231 His17Leu
50 Lithuania 27944 C T 232 166 His17His
51 Lithuania 27945 C 232 232
52 Lithuania 27946 A C 232 231 Gln18Pro
53 Lithuania 27947 A C 232 231 Gln18His
54 Lithuania 27948 G A 232 231 Glu19Lys
55 Lithuania 27949 A 232 232
56 Lithuania 27950 A 233 233
57 Lithuania 27951 T A 233 232 Cys20Ser
58 Lithuania 27952 G A 233 232 Cys20Tyr
59 Lithuania 27953 T 234 234
60 Lithuania 27954 A 235 235
61 Lithuania 27955 G 235 235
62 Lithuania 27956 T 235 235
63 Lithuania 27957 T 235 235
64 Lithuania 27958 T 235 235
65 Lithuania 27959 A 235 235
66 Lithuania 27960 C T 235 233 Gln23*
67 Lithuania 27961 A 235 235
68 Lithuania 27962 G 235 235
69 Lithuania 27963 T 235 235
70 Lithuania 27964 C 235 235
71 Lithuania 27965 A 235 235
72 Lithuania 27966 T 235 235
73 Lithuania 27967 G 235 235
74 Lithuania 27968 T 235 235
75 Lithuania 27969 A 235 235
76 Lithuania 27970 C 235 235
77 Lithuania 27971 T 235 235
78 Lithuania 27972 C 235 235
79 Lithuania 27973 A 235 235
80 Lithuania 27974 A 235 235
81 Lithuania 27975 C 235 235
82 Lithuania 27976 A 235 235
83 Lithuania 27977 T 235 235
84 Lithuania 27978 C 235 235
85 Lithuania 27979 A 235 235
86 Lithuania 27980 A 235 235
87 Lithuania 27981 C 235 235
88 Lithuania 27982 C 235 235
89 Lithuania 27983 A 235 235
90 Lithuania 27984 T 235 235
91 Lithuania 27985 A 235 235
92 Lithuania 27986 T 235 235
93 Lithuania 27987 G 235 235
94 Lithuania 27988 T 235 235
95 Lithuania 27989 A 235 235
96 Lithuania 27990 G 235 235
97 Lithuania 27991 T 235 235
98 Lithuania 27992 T 235 235
99 Lithuania 27993 G 235 235
100 Lithuania 27994 A 235 235
101 Lithuania 27995 T 235 235
102 Lithuania 27996 G 235 235
103 Lithuania 27997 A 235 235
104 Lithuania 27998 C 235 235
105 Lithuania 27999 C 235 235
106 Lithuania 28000 C 235 235
107 Lithuania 28001 G 235 235
108 Lithuania 28002 T 235 235
109 Lithuania 28003 G 235 235
110 Lithuania 28004 T 235 235
111 Lithuania 28005 C 235 235
112 Lithuania 28006 C 235 235
113 Lithuania 28007 T 235 235
114 Lithuania 28008 A 235 235
115 Lithuania 28009 T 235 235
116 Lithuania 28010 T 235 235
117 Lithuania 28011 C T 235 234 His40Tyr
118 Lithuania 28012 A 235 235
119 Lithuania 28013 C 235 235
120 Lithuania 28014 T 235 235
121 Lithuania 28015 T 235 235
122 Lithuania 28016 C 235 235
123 Lithuania 28017 T 235 235
124 Lithuania 28018 A 235 235
125 Lithuania 28019 T 235 235
126 Lithuania 28020 T 235 235
127 Lithuania 28021 C 235 235
128 Lithuania 28022 T 235 235
129 Lithuania 28023 A 235 235
130 Lithuania 28024 A 235 235
131 Lithuania 28025 A 235 235
132 Lithuania 28026 T 235 235
133 Lithuania 28027 G 235 235
134 Lithuania 28028 G 235 235
135 Lithuania 28029 T 235 235
136 Lithuania 28030 A 235 235
137 Lithuania 28031 T 235 235
138 Lithuania 28032 A 235 235
139 Lithuania 28033 T 235 235
140 Lithuania 28034 T 235 235
141 Lithuania 28035 A 235 235
142 Lithuania 28036 G 235 235
143 Lithuania 28037 A 235 235
144 Lithuania 28038 G 235 235
145 Lithuania 28039 T 235 235
146 Lithuania 28040 A 235 235
147 Lithuania 28041 G 235 235
148 Lithuania 28042 G 235 235
149 Lithuania 28043 A 235 235
150 Lithuania 28044 G 235 235
151 Lithuania 28045 C 235 235
152 Lithuania 28046 T 235 235
153 Lithuania 28047 A 235 235
154 Lithuania 28048 G 235 235
155 Lithuania 28049 A 235 235
156 Lithuania 28050 A 235 235
157 Lithuania 28051 A 235 235
158 Lithuania 28052 A 235 235
159 Lithuania 28053 T 235 235
160 Lithuania 28054 C 235 235
161 Lithuania 28055 A 235 235
162 Lithuania 28056 G 235 235
163 Lithuania 28057 C T 235 234 Ala55Val
164 Lithuania 28058 A 235 235
165 Lithuania 28059 C 235 235
166 Lithuania 28060 C 235 235
167 Lithuania 28061 T 235 235
168 Lithuania 28062 T 235 235
169 Lithuania 28063 T 235 235
170 Lithuania 28064 A 235 235
171 Lithuania 28065 A 235 235
172 Lithuania 28066 T 235 235
173 Lithuania 28067 T 235 235
174 Lithuania 28068 G 235 235
175 Lithuania 28069 A 235 235
176 Lithuania 28070 A 235 235
177 Lithuania 28071 T 235 235
178 Lithuania 28072 T 235 235
179 Lithuania 28073 G 235 235
180 Lithuania 28074 T 235 235
181 Lithuania 28075 G 235 235
182 Lithuania 28076 C 235 235
183 Lithuania 28077 G 235 235
184 Lithuania 28078 T 235 235
185 Lithuania 28079 G 235 235
186 Lithuania 28080 G 235 235
187 Lithuania 28081 A 235 235
188 Lithuania 28082 T 235 235
189 Lithuania 28083 G 235 235
190 Lithuania 28084 A 235 235
191 Lithuania 28085 G 235 235
192 Lithuania 28086 G 235 235
193 Lithuania 28087 C 235 235
194 Lithuania 28088 T 235 235
195 Lithuania 28089 G 235 235
196 Lithuania 28090 G 235 235
197 Lithuania 28091 T 235 235
198 Lithuania 28092 T 235 235
199 Lithuania 28093 C 235 235
200 Lithuania 28094 T 235 235
201 Lithuania 28095 A 235 235
202 Lithuania 28096 A 235 235
203 Lithuania 28097 A 235 235
204 Lithuania 28098 T 235 235
205 Lithuania 28099 C 235 235
206 Lithuania 28100 A 235 235
207 Lithuania 28101 C 235 235
208 Lithuania 28102 C 235 235
209 Lithuania 28103 C 235 235
210 Lithuania 28104 A 235 235
211 Lithuania 28105 T 235 235
212 Lithuania 28106 T 235 235
213 Lithuania 28107 C 235 235
214 Lithuania 28108 A 235 235
215 Lithuania 28109 G 235 235
216 Lithuania 28110 T 235 235
217 Lithuania 28111 A 235 235
218 Lithuania 28112 C 235 235
219 Lithuania 28113 A 235 235
220 Lithuania 28114 T 235 235
221 Lithuania 28115 C 235 235
222 Lithuania 28116 G 235 235
223 Lithuania 28117 A 235 235
224 Lithuania 28118 T 235 235
225 Lithuania 28119 A 235 235
226 Lithuania 28120 T 235 235
227 Lithuania 28121 C 235 235
228 Lithuania 28122 G 235 235
229 Lithuania 28123 G 235 235
230 Lithuania 28124 T 235 235
231 Lithuania 28125 A 235 235
232 Lithuania 28126 A 235 235
233 Lithuania 28127 T 235 235
234 Lithuania 28128 T 235 235
235 Lithuania 28129 A 235 235
236 Lithuania 28130 T 235 235
237 Lithuania 28131 A 235 235
238 Lithuania 28132 C 235 235
239 Lithuania 28133 A 235 235
240 Lithuania 28134 G 235 235
241 Lithuania 28135 T 235 235
242 Lithuania 28136 T 235 235
243 Lithuania 28137 T 235 235
244 Lithuania 28138 C 235 235
245 Lithuania 28139 C 235 235
246 Lithuania 28140 T 235 235
247 Lithuania 28141 G 235 235
248 Lithuania 28142 T 235 235
249 Lithuania 28143 T 235 235
250 Lithuania 28144 T 235 235
251 Lithuania 28145 A 235 235
252 Lithuania 28146 C 235 235
253 Lithuania 28147 C 235 235
254 Lithuania 28148 T 235 235
255 Lithuania 28149 T 235 235
256 Lithuania 28150 T 235 235
257 Lithuania 28151 T 235 235
258 Lithuania 28152 A 235 235
259 Lithuania 28153 C 235 235
260 Lithuania 28154 A 235 235
261 Lithuania 28155 A 235 235
262 Lithuania 28156 T 235 235
263 Lithuania 28157 T 235 235
264 Lithuania 28158 A 235 235
265 Lithuania 28159 A 235 235
266 Lithuania 28160 T 235 235
267 Lithuania 28161 T 235 235
268 Lithuania 28162 G 235 235
269 Lithuania 28163 C 235 235
270 Lithuania 28164 C 235 235
271 Lithuania 28165 A 235 235
272 Lithuania 28166 G 235 235
273 Lithuania 28167 G 235 235
274 Lithuania 28168 A 235 235
275 Lithuania 28169 A 235 235
276 Lithuania 28170 C 235 235
277 Lithuania 28171 C 235 235
278 Lithuania 28172 T 235 235
279 Lithuania 28173 A 235 235
280 Lithuania 28174 A 235 235
281 Lithuania 28175 A 235 235
282 Lithuania 28176 T 235 235
283 Lithuania 28177 T 235 235
284 Lithuania 28178 G 235 235
285 Lithuania 28179 G 235 235
286 Lithuania 28180 G 235 235
287 Lithuania 28181 T 235 235
288 Lithuania 28182 A 235 235
289 Lithuania 28183 G 235 235
290 Lithuania 28184 T 235 235
291 Lithuania 28185 C 235 235
292 Lithuania 28186 T 235 235
293 Lithuania 28187 T 235 235
294 Lithuania 28188 G 235 235
295 Lithuania 28189 T 235 235
296 Lithuania 28190 A 235 235
297 Lithuania 28191 G 235 235
298 Lithuania 28192 T 235 235
299 Lithuania 28193 G 235 235
300 Lithuania 28194 C 235 235
301 Lithuania 28195 G 235 235
302 Lithuania 28196 T 235 235
303 Lithuania 28197 T 235 235
304 Lithuania 28198 G 235 235
305 Lithuania 28199 T 235 235
306 Lithuania 28200 T 235 235
307 Lithuania 28201 C T 235 232 Ser103Leu
308 Lithuania 28202 G 235 235
309 Lithuania 28203 T 235 235
310 Lithuania 28204 T 235 235
311 Lithuania 28205 C 235 234
312 Lithuania 28206 T 235 234
313 Lithuania 28207 A 235 234
314 Lithuania 28208 T 235 234
315 Lithuania 28209 G 235 234
316 Lithuania 28210 A 235 234
317 Lithuania 28211 A 235 234
318 Lithuania 28212 G 235 234
319 Lithuania 28213 A 235 234
320 Lithuania 28214 C 235 234
321 Lithuania 28215 T 235 234
322 Lithuania 28216 T 235 234
323 Lithuania 28217 T 235 234
324 Lithuania 28218 T 235 235
325 Lithuania 28219 T 235 235
326 Lithuania 28220 A 235 235
327 Lithuania 28221 G 235 235
328 Lithuania 28222 A 235 235
329 Lithuania 28223 G 235 235
330 Lithuania 28224 T 235 235
331 Lithuania 28225 A 235 235
332 Lithuania 28226 T 235 235
333 Lithuania 28227 C 235 235
334 Lithuania 28228 A 235 235
335 Lithuania 28229 T 235 235
336 Lithuania 28230 G 235 235
337 Lithuania 28231 A 235 235
338 Lithuania 28232 C 235 235
339 Lithuania 28233 G 235 235
340 Lithuania 28234 T 235 235
341 Lithuania 28235 T 235 235
342 Lithuania 28236 C 235 235
343 Lithuania 28237 G 235 235
344 Lithuania 28238 T 235 235
345 Lithuania 28239 G 235 235
346 Lithuania 28240 T 235 235
347 Lithuania 28241 T 235 235
348 Lithuania 28242 G 235 235
349 Lithuania 28243 T 235 235
350 Lithuania 28244 T 235 235
351 Lithuania 28245 T 235 235
352 Lithuania 28246 T 235 235
353 Lithuania 28247 A 235 235
354 Lithuania 28248 G 235 235
355 Lithuania 28249 A 235 235
356 Lithuania 28250 T 234 234
357 Lithuania 28251 T 234 234
358 Lithuania 28252 T 234 234
359 Lithuania 28253 C T 234 233 Phe120Phe
360 Lithuania 28254 A 234 234
361 Lithuania 28255 T 234 234
362 Lithuania 28256 C 234 234
363 Lithuania 28257 T 234 234
364 Lithuania 28258 A 234 234
365 Lithuania 28259 A 234 234