National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                       1
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q 1   18                                        
R     12               1                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 27894 A 20 20
1 Lebanon 27895 T 20 20
2 Lebanon 27896 G 20 20
3 Lebanon 27897 A 20 20
4 Lebanon 27898 A 20 20
5 Lebanon 27899 A 20 20
6 Lebanon 27900 T 20 20
7 Lebanon 27901 T 20 20
8 Lebanon 27902 T 20 20
9 Lebanon 27903 C 20 20
10 Lebanon 27904 T 20 20
11 Lebanon 27905 T 20 20
12 Lebanon 27906 G 20 20
13 Lebanon 27907 T 20 20
14 Lebanon 27908 T 20 20
15 Lebanon 27909 T 20 20
16 Lebanon 27910 T 20 20
17 Lebanon 27911 C 20 20
18 Lebanon 27912 T 20 20
19 Lebanon 27913 T 20 20
20 Lebanon 27914 A 20 20
21 Lebanon 27915 G 20 20
22 Lebanon 27916 G 20 20
23 Lebanon 27917 A 20 20
24 Lebanon 27918 A 20 20
25 Lebanon 27919 T 20 20
26 Lebanon 27920 C 20 20
27 Lebanon 27921 A 20 20
28 Lebanon 27922 T 20 20
29 Lebanon 27923 C 20 20
30 Lebanon 27924 A 20 20
31 Lebanon 27925 C 20 20
32 Lebanon 27926 A 20 20
33 Lebanon 27927 A 20 20
34 Lebanon 27928 C 20 20
35 Lebanon 27929 T 20 20
36 Lebanon 27930 G 20 20
37 Lebanon 27931 T 20 20
38 Lebanon 27932 A 20 20
39 Lebanon 27933 G 20 20
40 Lebanon 27934 C 20 20
41 Lebanon 27935 T 20 20
42 Lebanon 27936 G 20 20
43 Lebanon 27937 C 20 20
44 Lebanon 27938 A 20 20
45 Lebanon 27939 T 20 20
46 Lebanon 27940 T 20 20
47 Lebanon 27941 T 20 20
48 Lebanon 27942 C 20 20
49 Lebanon 27943 A 20 20
50 Lebanon 27944 C 20 20
51 Lebanon 27945 C 20 20
52 Lebanon 27946 A 20 20
53 Lebanon 27947 A 20 20
54 Lebanon 27948 G 20 20
55 Lebanon 27949 A 20 20
56 Lebanon 27950 A 20 20
57 Lebanon 27951 T 20 20
58 Lebanon 27952 G 20 20
59 Lebanon 27953 T 20 20
60 Lebanon 27954 A 20 20
61 Lebanon 27955 G 20 20
62 Lebanon 27956 T 20 20
63 Lebanon 27957 T 20 20
64 Lebanon 27958 T 20 20
65 Lebanon 27959 A 20 20
66 Lebanon 27960 C 20 20
67 Lebanon 27961 A 20 20
68 Lebanon 27962 G 20 20
69 Lebanon 27963 T 20 20
70 Lebanon 27964 C 20 20
71 Lebanon 27965 A 20 20
72 Lebanon 27966 T 20 20
73 Lebanon 27967 G 20 20
74 Lebanon 27968 T 20 20
75 Lebanon 27969 A 20 20
76 Lebanon 27970 C 20 20
77 Lebanon 27971 T 20 20
78 Lebanon 27972 C T 20 19 Gln27*
79 Lebanon 27973 A 20 20
80 Lebanon 27974 A 20 20
81 Lebanon 27975 C 20 20
82 Lebanon 27976 A 20 20
83 Lebanon 27977 T 20 20
84 Lebanon 27978 C 20 20
85 Lebanon 27979 A 20 20
86 Lebanon 27980 A 20 20
87 Lebanon 27981 C 20 20
88 Lebanon 27982 C 20 20
89 Lebanon 27983 A 20 20
90 Lebanon 27984 T 20 20
91 Lebanon 27985 A 20 20
92 Lebanon 27986 T 20 20
93 Lebanon 27987 G 20 20
94 Lebanon 27988 T 20 20
95 Lebanon 27989 A 20 20
96 Lebanon 27990 G 20 20
97 Lebanon 27991 T 20 20
98 Lebanon 27992 T 20 20
99 Lebanon 27993 G 20 20
100 Lebanon 27994 A 20 20
101 Lebanon 27995 T 20 20
102 Lebanon 27996 G 20 20
103 Lebanon 27997 A 20 20
104 Lebanon 27998 C 20 20
105 Lebanon 27999 C 20 20
106 Lebanon 28000 C 20 20
107 Lebanon 28001 G 20 20
108 Lebanon 28002 T 20 20
109 Lebanon 28003 G 20 20
110 Lebanon 28004 T 20 20
111 Lebanon 28005 C 20 20
112 Lebanon 28006 C 20 20
113 Lebanon 28007 T 20 20
114 Lebanon 28008 A 20 20
115 Lebanon 28009 T 20 20
116 Lebanon 28010 T 20 20
117 Lebanon 28011 C 20 20
118 Lebanon 28012 A 20 20
119 Lebanon 28013 C 20 20
120 Lebanon 28014 T 20 20
121 Lebanon 28015 T 20 20
122 Lebanon 28016 C 20 20
123 Lebanon 28017 T 20 20
124 Lebanon 28018 A 20 20
125 Lebanon 28019 T 20 20
126 Lebanon 28020 T 20 20
127 Lebanon 28021 C 20 20
128 Lebanon 28022 T 20 20
129 Lebanon 28023 A 20 20
130 Lebanon 28024 A 20 20
131 Lebanon 28025 A 20 20
132 Lebanon 28026 T 20 20
133 Lebanon 28027 G 20 20
134 Lebanon 28028 G 20 20
135 Lebanon 28029 T 20 20
136 Lebanon 28030 A 20 20
137 Lebanon 28031 T 20 20
138 Lebanon 28032 A 20 20
139 Lebanon 28033 T 20 20
140 Lebanon 28034 T 20 20
141 Lebanon 28035 A 20 20
142 Lebanon 28036 G 20 20
143 Lebanon 28037 A 20 20
144 Lebanon 28038 G 20 20
145 Lebanon 28039 T 20 20
146 Lebanon 28040 A 20 20
147 Lebanon 28041 G 20 20
148 Lebanon 28042 G 20 20
149 Lebanon 28043 A 20 20
150 Lebanon 28044 G 20 20
151 Lebanon 28045 C 20 20
152 Lebanon 28046 T 20 20
153 Lebanon 28047 A 20 20
154 Lebanon 28048 G T 20 19 Arg52Ile
155 Lebanon 28049 A 20 20
156 Lebanon 28050 A 20 20
157 Lebanon 28051 A 20 20
158 Lebanon 28052 A 20 20
159 Lebanon 28053 T 20 20
160 Lebanon 28054 C 20 20
161 Lebanon 28055 A 20 20
162 Lebanon 28056 G 20 20
163 Lebanon 28057 C 20 20
164 Lebanon 28058 A 20 20
165 Lebanon 28059 C 20 20
166 Lebanon 28060 C 20 20
167 Lebanon 28061 T 20 20
168 Lebanon 28062 T 20 20
169 Lebanon 28063 T 20 20
170 Lebanon 28064 A 20 20
171 Lebanon 28065 A 20 20
172 Lebanon 28066 T 20 20
173 Lebanon 28067 T 20 20
174 Lebanon 28068 G 20 20
175 Lebanon 28069 A 20 20
176 Lebanon 28070 A 20 20
177 Lebanon 28071 T 20 20
178 Lebanon 28072 T 20 20
179 Lebanon 28073 G 20 20
180 Lebanon 28074 T 20 20
181 Lebanon 28075 G 20 20
182 Lebanon 28076 C 20 20
183 Lebanon 28077 G 20 20
184 Lebanon 28078 T 20 20
185 Lebanon 28079 G 20 20
186 Lebanon 28080 G T 20 19 Asp63Tyr
187 Lebanon 28081 A 20 20
188 Lebanon 28082 T 20 20
189 Lebanon 28083 G 20 20
190 Lebanon 28084 A 20 20
191 Lebanon 28085 G 20 20
192 Lebanon 28086 G 20 20
193 Lebanon 28087 C 20 20
194 Lebanon 28088 T 20 20
195 Lebanon 28089 G 20 20
196 Lebanon 28090 G 20 20
197 Lebanon 28091 T 20 20
198 Lebanon 28092 T 20 20
199 Lebanon 28093 C 20 20
200 Lebanon 28094 T 20 20
201 Lebanon 28095 A 20 20
202 Lebanon 28096 A 20 20
203 Lebanon 28097 A 20 20
204 Lebanon 28098 T 20 20
205 Lebanon 28099 C 20 20
206 Lebanon 28100 A 20 20
207 Lebanon 28101 C 20 20
208 Lebanon 28102 C 20 20
209 Lebanon 28103 C 20 20
210 Lebanon 28104 A 20 20
211 Lebanon 28105 T 23 23
212 Lebanon 28106 T 23 23
213 Lebanon 28107 C 23 23
214 Lebanon 28108 A 23 23
215 Lebanon 28109 G 23 23
216 Lebanon 28110 T 23 23
217 Lebanon 28111 A G 23 20 Tyr73Cys
218 Lebanon 28112 C 23 23
219 Lebanon 28113 A 23 23
220 Lebanon 28114 T 23 23
221 Lebanon 28115 C 23 23
222 Lebanon 28116 G 23 23
223 Lebanon 28117 A 23 23
224 Lebanon 28118 T 23 23
225 Lebanon 28119 A 23 23
226 Lebanon 28120 T 23 23
227 Lebanon 28121 C 23 23
228 Lebanon 28122 G 23 23
229 Lebanon 28123 G 23 23
230 Lebanon 28124 T 23 23
231 Lebanon 28125 A 23 23
232 Lebanon 28126 A 23 23
233 Lebanon 28127 T 23 23
234 Lebanon 28128 T 23 23
235 Lebanon 28129 A 23 23
236 Lebanon 28130 T 23 23
237 Lebanon 28131 A 23 23
238 Lebanon 28132 C 23 23
239 Lebanon 28133 A 23 23
240 Lebanon 28134 G 23 23
241 Lebanon 28135 T 23 23
242 Lebanon 28136 T 23 23
243 Lebanon 28137 T 23 23
244 Lebanon 28138 C 23 23
245 Lebanon 28139 C 23 23
246 Lebanon 28140 T 23 23
247 Lebanon 28141 G 23 23
248 Lebanon 28142 T 23 23
249 Lebanon 28143 T 23 23
250 Lebanon 28144 T 23 23
251 Lebanon 28145 A 23 23
252 Lebanon 28146 C 23 23
253 Lebanon 28147 C 23 23
254 Lebanon 28148 T 23 23
255 Lebanon 28149 T 23 23
256 Lebanon 28150 T 23 23
257 Lebanon 28151 T 23 23
258 Lebanon 28152 A 23 23
259 Lebanon 28153 C 23 23
260 Lebanon 28154 A 23 23
261 Lebanon 28155 A 23 23
262 Lebanon 28156 T 23 23
263 Lebanon 28157 T 23 23
264 Lebanon 28158 A 23 23
265 Lebanon 28159 A 23 23
266 Lebanon 28160 T 23 23
267 Lebanon 28161 T 23 23
268 Lebanon 28162 G 23 23
269 Lebanon 28163 C 23 23
270 Lebanon 28164 C 23 23
271 Lebanon 28165 A 23 23
272 Lebanon 28166 G 23 23
273 Lebanon 28167 G 23 23
274 Lebanon 28168 A 23 23
275 Lebanon 28169 A 23 23
276 Lebanon 28170 C 23 23
277 Lebanon 28171 C 23 23
278 Lebanon 28172 T 23 23
279 Lebanon 28173 A 23 23
280 Lebanon 28174 A 23 23
281 Lebanon 28175 A 23 23
282 Lebanon 28176 T 23 23
283 Lebanon 28177 T 23 23
284 Lebanon 28178 G 23 23
285 Lebanon 28179 G 23 23
286 Lebanon 28180 G 23 23
287 Lebanon 28181 T 23 23
288 Lebanon 28182 A 23 23
289 Lebanon 28183 G 23 23
290 Lebanon 28184 T 23 23
291 Lebanon 28185 C 23 23
292 Lebanon 28186 T 23 23
293 Lebanon 28187 T 23 23
294 Lebanon 28188 G 23 23
295 Lebanon 28189 T 23 23
296 Lebanon 28190 A 23 23
297 Lebanon 28191 G 23 23
298 Lebanon 28192 T 23 23
299 Lebanon 28193 G 23 23
300 Lebanon 28194 C 23 23
301 Lebanon 28195 G 23 23
302 Lebanon 28196 T 23 23
303 Lebanon 28197 T 23 23
304 Lebanon 28198 G 23 23
305 Lebanon 28199 T 23 23
306 Lebanon 28200 T 23 23
307 Lebanon 28201 C 23 23
308 Lebanon 28202 G 23 23
309 Lebanon 28203 T 23 23
310 Lebanon 28204 T 23 23
311 Lebanon 28205 C 23 23
312 Lebanon 28206 T 23 23
313 Lebanon 28207 A 23 23
314 Lebanon 28208 T 23 23
315 Lebanon 28209 G 23 23
316 Lebanon 28210 A 23 23
317 Lebanon 28211 A 23 23
318 Lebanon 28212 G 23 23
319 Lebanon 28213 A 23 23
320 Lebanon 28214 C 23 23
321 Lebanon 28215 T 23 23
322 Lebanon 28216 T 23 23
323 Lebanon 28217 T 23 23
324 Lebanon 28218 T 23 23
325 Lebanon 28219 T 23 23
326 Lebanon 28220 A 23 23
327 Lebanon 28221 G 23 23
328 Lebanon 28222 A 23 23
329 Lebanon 28223 G 23 23
330 Lebanon 28224 T 23 23
331 Lebanon 28225 A 23 23
332 Lebanon 28226 T 23 23
333 Lebanon 28227 C 23 23
334 Lebanon 28228 A 23 23
335 Lebanon 28229 T 23 23
336 Lebanon 28230 G 23 23
337 Lebanon 28231 A 23 23
338 Lebanon 28232 C 23 23
339 Lebanon 28233 G 23 23
340 Lebanon 28234 T 23 23
341 Lebanon 28235 T 23 23
342 Lebanon 28236 C 23 23
343 Lebanon 28237 G 23 23
344 Lebanon 28238 T 23 23
345 Lebanon 28239 G 23 23
346 Lebanon 28240 T 23 23
347 Lebanon 28241 T 23 23
348 Lebanon 28242 G 23 23
349 Lebanon 28243 T 23 23
350 Lebanon 28244 T 23 23
351 Lebanon 28245 T 23 23
352 Lebanon 28246 T 23 23
353 Lebanon 28247 A 23 23
354 Lebanon 28248 G 23 23
355 Lebanon 28249 A 23 23
356 Lebanon 28250 T 23 23
357 Lebanon 28251 T 23 23
358 Lebanon 28252 T 23 23
359 Lebanon 28253 C 23 23
360 Lebanon 28254 A 23 23
361 Lebanon 28255 T 23 23
362 Lebanon 28256 C 23 23
363 Lebanon 28257 T 23 23
364 Lebanon 28258 A 23 23
365 Lebanon 28259 A 23 23