National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 27894 A 8 8
1 Kuwait 27895 T 8 8
2 Kuwait 27896 G 8 8
3 Kuwait 27897 A 8 8
4 Kuwait 27898 A 8 8
5 Kuwait 27899 A 8 8
6 Kuwait 27900 T 8 8
7 Kuwait 27901 T 8 8
8 Kuwait 27902 T 8 8
9 Kuwait 27903 C 8 8
10 Kuwait 27904 T 8 8
11 Kuwait 27905 T 8 8
12 Kuwait 27906 G 8 8
13 Kuwait 27907 T 8 8
14 Kuwait 27908 T 8 8
15 Kuwait 27909 T 8 8
16 Kuwait 27910 T 8 8
17 Kuwait 27911 C 8 8
18 Kuwait 27912 T 8 8
19 Kuwait 27913 T 8 8
20 Kuwait 27914 A 8 8
21 Kuwait 27915 G 8 8
22 Kuwait 27916 G 8 8
23 Kuwait 27917 A 8 8
24 Kuwait 27918 A 8 8
25 Kuwait 27919 T 8 8
26 Kuwait 27920 C 8 8
27 Kuwait 27921 A 8 8
28 Kuwait 27922 T 8 8
29 Kuwait 27923 C 8 8
30 Kuwait 27924 A 8 8
31 Kuwait 27925 C 8 8
32 Kuwait 27926 A 8 8
33 Kuwait 27927 A 8 8
34 Kuwait 27928 C 8 8
35 Kuwait 27929 T 8 8
36 Kuwait 27930 G 8 8
37 Kuwait 27931 T 8 8
38 Kuwait 27932 A 8 8
39 Kuwait 27933 G 8 8
40 Kuwait 27934 C 8 8
41 Kuwait 27935 T 8 8
42 Kuwait 27936 G 8 8
43 Kuwait 27937 C 8 8
44 Kuwait 27938 A 8 8
45 Kuwait 27939 T 8 8
46 Kuwait 27940 T 8 8
47 Kuwait 27941 T 8 8
48 Kuwait 27942 C 8 8
49 Kuwait 27943 A 8 8
50 Kuwait 27944 C 8 8
51 Kuwait 27945 C 8 8
52 Kuwait 27946 A 8 8
53 Kuwait 27947 A 8 8
54 Kuwait 27948 G 8 8
55 Kuwait 27949 A 8 8
56 Kuwait 27950 A 8 8
57 Kuwait 27951 T 8 8
58 Kuwait 27952 G 8 8
59 Kuwait 27953 T 8 8
60 Kuwait 27954 A 8 8
61 Kuwait 27955 G 8 8
62 Kuwait 27956 T 8 8
63 Kuwait 27957 T 8 8
64 Kuwait 27958 T 8 8
65 Kuwait 27959 A 8 8
66 Kuwait 27960 C 8 8
67 Kuwait 27961 A 8 8
68 Kuwait 27962 G 8 8
69 Kuwait 27963 T 8 8
70 Kuwait 27964 C 8 8
71 Kuwait 27965 A 8 8
72 Kuwait 27966 T 8 8
73 Kuwait 27967 G 8 8
74 Kuwait 27968 T 8 8
75 Kuwait 27969 A 8 8
76 Kuwait 27970 C 8 8
77 Kuwait 27971 T 8 8
78 Kuwait 27972 C 8 8
79 Kuwait 27973 A 8 8
80 Kuwait 27974 A 8 8
81 Kuwait 27975 C 8 8
82 Kuwait 27976 A 8 8
83 Kuwait 27977 T 8 8
84 Kuwait 27978 C 8 8
85 Kuwait 27979 A 8 8
86 Kuwait 27980 A 8 8
87 Kuwait 27981 C 8 8
88 Kuwait 27982 C 8 8
89 Kuwait 27983 A 8 8
90 Kuwait 27984 T 8 8
91 Kuwait 27985 A 8 8
92 Kuwait 27986 T 8 8
93 Kuwait 27987 G 8 8
94 Kuwait 27988 T 8 8
95 Kuwait 27989 A 8 8
96 Kuwait 27990 G 8 8
97 Kuwait 27991 T 8 8
98 Kuwait 27992 T 8 8
99 Kuwait 27993 G 8 8
100 Kuwait 27994 A 8 8
101 Kuwait 27995 T 8 8
102 Kuwait 27996 G 8 8
103 Kuwait 27997 A 8 8
104 Kuwait 27998 C 8 8
105 Kuwait 27999 C 8 8
106 Kuwait 28000 C 8 8
107 Kuwait 28001 G 8 8
108 Kuwait 28002 T 8 8
109 Kuwait 28003 G 8 8
110 Kuwait 28004 T 8 8
111 Kuwait 28005 C 8 8
112 Kuwait 28006 C 8 8
113 Kuwait 28007 T 8 8
114 Kuwait 28008 A 8 8
115 Kuwait 28009 T 8 8
116 Kuwait 28010 T 8 8
117 Kuwait 28011 C 8 8
118 Kuwait 28012 A 8 8
119 Kuwait 28013 C 8 8
120 Kuwait 28014 T 8 8
121 Kuwait 28015 T 8 8
122 Kuwait 28016 C 8 8
123 Kuwait 28017 T 8 8
124 Kuwait 28018 A 8 8
125 Kuwait 28019 T 8 8
126 Kuwait 28020 T 8 8
127 Kuwait 28021 C 8 8
128 Kuwait 28022 T 8 8
129 Kuwait 28023 A 8 8
130 Kuwait 28024 A 8 8
131 Kuwait 28025 A 8 8
132 Kuwait 28026 T 8 8
133 Kuwait 28027 G 8 8
134 Kuwait 28028 G 8 8
135 Kuwait 28029 T 8 8
136 Kuwait 28030 A 8 8
137 Kuwait 28031 T 8 8
138 Kuwait 28032 A 8 8
139 Kuwait 28033 T 8 8
140 Kuwait 28034 T 8 8
141 Kuwait 28035 A 8 8
142 Kuwait 28036 G 8 8
143 Kuwait 28037 A 8 8
144 Kuwait 28038 G 8 8
145 Kuwait 28039 T 8 8
146 Kuwait 28040 A 8 8
147 Kuwait 28041 G 8 8
148 Kuwait 28042 G 8 8
149 Kuwait 28043 A 8 8
150 Kuwait 28044 G 8 8
151 Kuwait 28045 C 8 8
152 Kuwait 28046 T 8 8
153 Kuwait 28047 A 8 8
154 Kuwait 28048 G 8 8
155 Kuwait 28049 A 8 8
156 Kuwait 28050 A 8 8
157 Kuwait 28051 A 8 8
158 Kuwait 28052 A 8 8
159 Kuwait 28053 T 8 8
160 Kuwait 28054 C 8 8
161 Kuwait 28055 A 8 8
162 Kuwait 28056 G 8 8
163 Kuwait 28057 C 8 8
164 Kuwait 28058 A 8 8
165 Kuwait 28059 C 8 8
166 Kuwait 28060 C 8 8
167 Kuwait 28061 T 8 8
168 Kuwait 28062 T 8 8
169 Kuwait 28063 T 8 8
170 Kuwait 28064 A 8 8
171 Kuwait 28065 A 8 8
172 Kuwait 28066 T 8 8
173 Kuwait 28067 T 8 8
174 Kuwait 28068 G 8 8
175 Kuwait 28069 A 8 8
176 Kuwait 28070 A 8 8
177 Kuwait 28071 T 8 8
178 Kuwait 28072 T 8 8
179 Kuwait 28073 G 8 8
180 Kuwait 28074 T 8 8
181 Kuwait 28075 G 8 8
182 Kuwait 28076 C 8 8
183 Kuwait 28077 G 8 8
184 Kuwait 28078 T 8 8
185 Kuwait 28079 G 8 8
186 Kuwait 28080 G 8 8
187 Kuwait 28081 A 8 8
188 Kuwait 28082 T 8 8
189 Kuwait 28083 G 8 8
190 Kuwait 28084 A 8 8
191 Kuwait 28085 G 8 8
192 Kuwait 28086 G 8 8
193 Kuwait 28087 C 8 8
194 Kuwait 28088 T 8 8
195 Kuwait 28089 G 8 8
196 Kuwait 28090 G 8 8
197 Kuwait 28091 T 8 8
198 Kuwait 28092 T 8 8
199 Kuwait 28093 C 8 8
200 Kuwait 28094 T 8 8
201 Kuwait 28095 A 8 8
202 Kuwait 28096 A 8 8
203 Kuwait 28097 A 8 8
204 Kuwait 28098 T 8 8
205 Kuwait 28099 C 8 8
206 Kuwait 28100 A 8 8
207 Kuwait 28101 C 8 8
208 Kuwait 28102 C 8 8
209 Kuwait 28103 C 8 8
210 Kuwait 28104 A 8 8
211 Kuwait 28105 T 8 8
212 Kuwait 28106 T 8 8
213 Kuwait 28107 C 8 8
214 Kuwait 28108 A 8 8
215 Kuwait 28109 G 8 8
216 Kuwait 28110 T 8 8
217 Kuwait 28111 A 8 8
218 Kuwait 28112 C 8 8
219 Kuwait 28113 A 8 8
220 Kuwait 28114 T 8 8
221 Kuwait 28115 C 8 8
222 Kuwait 28116 G 8 8
223 Kuwait 28117 A 8 8
224 Kuwait 28118 T 8 8
225 Kuwait 28119 A 8 8
226 Kuwait 28120 T 8 8
227 Kuwait 28121 C 8 8
228 Kuwait 28122 G 8 8
229 Kuwait 28123 G 8 8
230 Kuwait 28124 T 8 8
231 Kuwait 28125 A 8 8
232 Kuwait 28126 A 8 8
233 Kuwait 28127 T 8 8
234 Kuwait 28128 T 8 8
235 Kuwait 28129 A 8 8
236 Kuwait 28130 T 8 8
237 Kuwait 28131 A 8 8
238 Kuwait 28132 C 8 8
239 Kuwait 28133 A 8 8
240 Kuwait 28134 G 8 8
241 Kuwait 28135 T 8 8
242 Kuwait 28136 T 8 8
243 Kuwait 28137 T 8 8
244 Kuwait 28138 C 8 8
245 Kuwait 28139 C 8 8
246 Kuwait 28140 T 8 8
247 Kuwait 28141 G 8 8
248 Kuwait 28142 T 8 8
249 Kuwait 28143 T 8 8
250 Kuwait 28144 T 8 8
251 Kuwait 28145 A 8 8
252 Kuwait 28146 C 8 8
253 Kuwait 28147 C 8 8
254 Kuwait 28148 T 8 8
255 Kuwait 28149 T 8 8
256 Kuwait 28150 T 8 8
257 Kuwait 28151 T 8 8
258 Kuwait 28152 A 8 8
259 Kuwait 28153 C 8 8
260 Kuwait 28154 A 8 8
261 Kuwait 28155 A 8 8
262 Kuwait 28156 T 8 8
263 Kuwait 28157 T 8 8
264 Kuwait 28158 A 8 8
265 Kuwait 28159 A 8 8
266 Kuwait 28160 T 8 8
267 Kuwait 28161 T 8 8
268 Kuwait 28162 G 8 8
269 Kuwait 28163 C 8 8
270 Kuwait 28164 C 8 8
271 Kuwait 28165 A 8 8
272 Kuwait 28166 G 8 8
273 Kuwait 28167 G 8 8
274 Kuwait 28168 A 8 8
275 Kuwait 28169 A 8 8
276 Kuwait 28170 C 8 8
277 Kuwait 28171 C 8 8
278 Kuwait 28172 T 8 8
279 Kuwait 28173 A 8 8
280 Kuwait 28174 A 8 8
281 Kuwait 28175 A 8 8
282 Kuwait 28176 T 8 8
283 Kuwait 28177 T 8 8
284 Kuwait 28178 G 8 8
285 Kuwait 28179 G 8 8
286 Kuwait 28180 G 8 8
287 Kuwait 28181 T 8 8
288 Kuwait 28182 A 8 8
289 Kuwait 28183 G 8 8
290 Kuwait 28184 T 8 8
291 Kuwait 28185 C 8 8
292 Kuwait 28186 T 8 8
293 Kuwait 28187 T 8 8
294 Kuwait 28188 G 8 8
295 Kuwait 28189 T 8 8
296 Kuwait 28190 A 8 8
297 Kuwait 28191 G 8 8
298 Kuwait 28192 T 8 8
299 Kuwait 28193 G 8 8
300 Kuwait 28194 C 8 8
301 Kuwait 28195 G 8 8
302 Kuwait 28196 T 8 8
303 Kuwait 28197 T 8 8
304 Kuwait 28198 G 8 8
305 Kuwait 28199 T 8 8
306 Kuwait 28200 T 8 8
307 Kuwait 28201 C 8 8
308 Kuwait 28202 G 8 8
309 Kuwait 28203 T 8 8
310 Kuwait 28204 T 8 8
311 Kuwait 28205 C 8 8
312 Kuwait 28206 T 8 8
313 Kuwait 28207 A 8 8
314 Kuwait 28208 T 8 8
315 Kuwait 28209 G 8 8
316 Kuwait 28210 A 8 8
317 Kuwait 28211 A 8 8
318 Kuwait 28212 G 8 8
319 Kuwait 28213 A 8 8
320 Kuwait 28214 C 8 8
321 Kuwait 28215 T 8 8
322 Kuwait 28216 T 8 8
323 Kuwait 28217 T 8 8
324 Kuwait 28218 T 8 8
325 Kuwait 28219 T 8 8
326 Kuwait 28220 A 8 8
327 Kuwait 28221 G 8 8
328 Kuwait 28222 A 8 8
329 Kuwait 28223 G 8 8
330 Kuwait 28224 T 8 8
331 Kuwait 28225 A 8 8
332 Kuwait 28226 T 8 8
333 Kuwait 28227 C 8 8
334 Kuwait 28228 A 8 8
335 Kuwait 28229 T 8 8
336 Kuwait 28230 G 8 8
337 Kuwait 28231 A 8 8
338 Kuwait 28232 C 8 8
339 Kuwait 28233 G 8 8
340 Kuwait 28234 T 8 8
341 Kuwait 28235 T 8 8
342 Kuwait 28236 C 8 8
343 Kuwait 28237 G 8 8
344 Kuwait 28238 T 8 8
345 Kuwait 28239 G 8 8
346 Kuwait 28240 T 8 8
347 Kuwait 28241 T 8 8
348 Kuwait 28242 G 8 8
349 Kuwait 28243 T 8 8
350 Kuwait 28244 T 8 8
351 Kuwait 28245 T 8 8
352 Kuwait 28246 T 8 8
353 Kuwait 28247 A 8 8
354 Kuwait 28248 G 8 8
355 Kuwait 28249 A 8 8
356 Kuwait 28250 T 8 8
357 Kuwait 28251 T 8 8
358 Kuwait 28252 T 8 8
359 Kuwait 28253 C 8 8
360 Kuwait 28254 A 8 8
361 Kuwait 28255 T 8 8
362 Kuwait 28256 C 8 8
363 Kuwait 28257 T 8 8
364 Kuwait 28258 A 8 8
365 Kuwait 28259 A 8 8