National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   1    
C     21   1                                    
D     22     1       1                          
E     18                 1                      
F     24         1                     1        
G 1   15                                        
H     12                                        
I     30               1   1                    
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27         1               1              
T     15                                        
V     36                   2                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kenya 27894 A 399 399
1 Kenya 27895 T 399 399
2 Kenya 27896 G 399 399
3 Kenya 27897 A 399 399
4 Kenya 27898 A 399 399
5 Kenya 27899 A 399 399
6 Kenya 27900 T 400 400
7 Kenya 27901 T C 400 393 Phe3Ser
8 Kenya 27902 T 401 401
9 Kenya 27903 C 401 401
10 Kenya 27904 T 401 401
11 Kenya 27905 T 401 401
12 Kenya 27906 G 401 400
13 Kenya 27907 T 401 401
14 Kenya 27908 T 401 401
15 Kenya 27909 T 401 401
16 Kenya 27910 T 401 401
17 Kenya 27911 C 401 401
18 Kenya 27912 T 401 401
19 Kenya 27913 T 401 401
20 Kenya 27914 A 401 401
21 Kenya 27915 G T 401 396 Gly8*
22 Kenya 27916 G 401 401
23 Kenya 27917 A 401 401
24 Kenya 27918 A 401 401
25 Kenya 27919 T 401 401
26 Kenya 27920 C T 401 384 Ile9Ile
27 Kenya 27921 A 402 402
28 Kenya 27922 T 402 402
29 Kenya 27923 C 407 407
30 Kenya 27924 A 416 416
31 Kenya 27925 C 416 416
32 Kenya 27926 A 416 416
33 Kenya 27927 A 416 416
34 Kenya 27928 C 416 416
35 Kenya 27929 T 416 416
36 Kenya 27930 G 416 416
37 Kenya 27931 T 416 416
38 Kenya 27932 A 416 416
39 Kenya 27933 G 416 416
40 Kenya 27934 C T 416 415 Ala14Val
41 Kenya 27935 T 416 416
42 Kenya 27936 G 416 416
43 Kenya 27937 C 416 416
44 Kenya 27938 A 416 416
45 Kenya 27939 T 416 416
46 Kenya 27940 T 416 416
47 Kenya 27941 T 416 416
48 Kenya 27942 C 416 416
49 Kenya 27943 A 416 416
50 Kenya 27944 C 416 416
51 Kenya 27945 C 416 416
52 Kenya 27946 A 416 416
53 Kenya 27947 A 416 416
54 Kenya 27948 G 416 416
55 Kenya 27949 A 416 416
56 Kenya 27950 A 416 416
57 Kenya 27951 T 416 416
58 Kenya 27952 G 416 416
59 Kenya 27953 T 416 416
60 Kenya 27954 A 416 416
61 Kenya 27955 G 416 416
62 Kenya 27956 T 416 416
63 Kenya 27957 T 416 416
64 Kenya 27958 T 416 416
65 Kenya 27959 A 416 416
66 Kenya 27960 C 416 416
67 Kenya 27961 A 416 416
68 Kenya 27962 G 416 416
69 Kenya 27963 T 416 416
70 Kenya 27964 C 416 416
71 Kenya 27965 A 416 416
72 Kenya 27966 T 416 416
73 Kenya 27967 G 416 416
74 Kenya 27968 T 416 416
75 Kenya 27969 A 416 416
76 Kenya 27970 C 416 416
77 Kenya 27971 T 416 416
78 Kenya 27972 C 416 416
79 Kenya 27973 A 416 416
80 Kenya 27974 A 416 416
81 Kenya 27975 C 416 416
82 Kenya 27976 A 416 416
83 Kenya 27977 T 416 416
84 Kenya 27978 C 416 416
85 Kenya 27979 A 416 416
86 Kenya 27980 A 416 416
87 Kenya 27981 C 416 416
88 Kenya 27982 C 416 416
89 Kenya 27983 A 416 416
90 Kenya 27984 T 416 416
91 Kenya 27985 A 416 416
92 Kenya 27986 T 416 416
93 Kenya 27987 G T 416 415 Val32Leu
94 Kenya 27988 T 416 416
95 Kenya 27989 A 416 416
96 Kenya 27990 G 416 416
97 Kenya 27991 T 416 416
98 Kenya 27992 T 416 416
99 Kenya 27993 G 416 416
100 Kenya 27994 A 416 416
101 Kenya 27995 T 416 416
102 Kenya 27996 G 416 416
103 Kenya 27997 A 416 416
104 Kenya 27998 C 416 416
105 Kenya 27999 C 416 416
106 Kenya 28000 C 416 416
107 Kenya 28001 G 416 416
108 Kenya 28002 T 416 416
109 Kenya 28003 G 416 416
110 Kenya 28004 T 416 416
111 Kenya 28005 C 416 416
112 Kenya 28006 C 416 416
113 Kenya 28007 T 416 416
114 Kenya 28008 A 416 416
115 Kenya 28009 T 416 416
116 Kenya 28010 T 416 416
117 Kenya 28011 C 416 416
118 Kenya 28012 A 416 416
119 Kenya 28013 C 416 416
120 Kenya 28014 T 416 416
121 Kenya 28015 T 416 416
122 Kenya 28016 C 416 416
123 Kenya 28017 T 416 416
124 Kenya 28018 A 416 416
125 Kenya 28019 T 416 416
126 Kenya 28020 T 416 416
127 Kenya 28021 C 416 416
128 Kenya 28022 T 416 416
129 Kenya 28023 A 416 416
130 Kenya 28024 A 416 416
131 Kenya 28025 A 416 416
132 Kenya 28026 T 416 416
133 Kenya 28027 G 416 416
134 Kenya 28028 G 416 416
135 Kenya 28029 T 416 416
136 Kenya 28030 A 416 416
137 Kenya 28031 T 416 416
138 Kenya 28032 A 416 416
139 Kenya 28033 T 416 416
140 Kenya 28034 T 416 416
141 Kenya 28035 A 416 416
142 Kenya 28036 G 416 416
143 Kenya 28037 A 416 416
144 Kenya 28038 G 416 416
145 Kenya 28039 T 416 416
146 Kenya 28040 A 416 416
147 Kenya 28041 G 416 416
148 Kenya 28042 G 416 416
149 Kenya 28043 A 416 416
150 Kenya 28044 G 416 416
151 Kenya 28045 C 416 416
152 Kenya 28046 T 416 416
153 Kenya 28047 A 416 416
154 Kenya 28048 G 416 416
155 Kenya 28049 A 416 416
156 Kenya 28050 A 416 416
157 Kenya 28051 A 416 416
158 Kenya 28052 A 416 416
159 Kenya 28053 T 416 416
160 Kenya 28054 C 416 416
161 Kenya 28055 A 416 416
162 Kenya 28056 G 416 416
163 Kenya 28057 C 416 416
164 Kenya 28058 A 416 416
165 Kenya 28059 C 416 416
166 Kenya 28060 C 416 416
167 Kenya 28061 T 416 416
168 Kenya 28062 T 416 416
169 Kenya 28063 T 416 416
170 Kenya 28064 A 416 416
171 Kenya 28065 A 416 416
172 Kenya 28066 T 416 416
173 Kenya 28067 T 416 416
174 Kenya 28068 G 416 416
175 Kenya 28069 A 416 416
176 Kenya 28070 A 416 416
177 Kenya 28071 T 416 416
178 Kenya 28072 T 416 416
179 Kenya 28073 G 416 416
180 Kenya 28074 T 416 416
181 Kenya 28075 G 416 416
182 Kenya 28076 C 416 416
183 Kenya 28077 G T 416 414 Val62Leu
184 Kenya 28078 T 416 416
185 Kenya 28079 G 416 416
186 Kenya 28080 G 416 416
187 Kenya 28081 A 416 416
188 Kenya 28082 T 416 416
189 Kenya 28083 G 416 416
190 Kenya 28084 A 416 416
191 Kenya 28085 G 416 416
192 Kenya 28086 G 416 416
193 Kenya 28087 C 416 416
194 Kenya 28088 T 416 416
195 Kenya 28089 G 416 416
196 Kenya 28090 G 416 416
197 Kenya 28091 T 416 416
198 Kenya 28092 T 416 416
199 Kenya 28093 C T 416 415 Ser67Phe
200 Kenya 28094 T 416 416
201 Kenya 28095 A 416 416
202 Kenya 28096 A 416 416
203 Kenya 28097 A 416 416
204 Kenya 28098 T C 416 414 Ser69Pro
205 Kenya 28099 C 416 416
206 Kenya 28100 A 416 416
207 Kenya 28101 C 416 416
208 Kenya 28102 C 416 416
209 Kenya 28103 C 416 416
210 Kenya 28104 A 416 416
211 Kenya 28105 T 511 511
212 Kenya 28106 T 511 511
213 Kenya 28107 C 511 511
214 Kenya 28108 A 511 511
215 Kenya 28109 G 511 511
216 Kenya 28110 T 511 511
217 Kenya 28111 A 511 511
218 Kenya 28112 C 511 511
219 Kenya 28113 A 511 511
220 Kenya 28114 T 511 511
221 Kenya 28115 C 511 511
222 Kenya 28116 G 511 511
223 Kenya 28117 A 511 511
224 Kenya 28118 T 511 511
225 Kenya 28119 A 511 511
226 Kenya 28120 T 511 511
227 Kenya 28121 C 511 511
228 Kenya 28122 G 511 511
229 Kenya 28123 G 511 511
230 Kenya 28124 T 511 511
231 Kenya 28125 A 511 511
232 Kenya 28126 A 511 511
233 Kenya 28127 T 511 511
234 Kenya 28128 T 511 511
235 Kenya 28129 A 511 511
236 Kenya 28130 T 511 511
237 Kenya 28131 A 511 511
238 Kenya 28132 C 511 511
239 Kenya 28133 A 511 511
240 Kenya 28134 G 511 511
241 Kenya 28135 T 511 511
242 Kenya 28136 T 511 511
243 Kenya 28137 T 511 511
244 Kenya 28138 C 511 511
245 Kenya 28139 C 511 511
246 Kenya 28140 T 511 511
247 Kenya 28141 G 511 511
248 Kenya 28142 T C 511 510 Cys83Cys
249 Kenya 28143 T 511 511
250 Kenya 28144 T C 511 484 Leu84Ser
251 Kenya 28145 A 511 511
252 Kenya 28146 C 511 511
253 Kenya 28147 C 511 511
254 Kenya 28148 T 511 511
255 Kenya 28149 T 511 511
256 Kenya 28150 T 511 511
257 Kenya 28151 T 511 511
258 Kenya 28152 A 511 511
259 Kenya 28153 C 511 511
260 Kenya 28154 A 511 511
261 Kenya 28155 A 511 511
262 Kenya 28156 T 511 511
263 Kenya 28157 T 511 511
264 Kenya 28158 A 511 511
265 Kenya 28159 A 511 511
266 Kenya 28160 T 511 511
267 Kenya 28161 T 511 511
268 Kenya 28162 G 511 511
269 Kenya 28163 C 511 511
270 Kenya 28164 C 511 511
271 Kenya 28165 A 511 511
272 Kenya 28166 G 511 511
273 Kenya 28167 G A 511 485 Glu92Lys
274 Kenya 28168 A 511 511
275 Kenya 28169 A 511 511
276 Kenya 28170 C 511 511
277 Kenya 28171 C 511 511
278 Kenya 28172 T 511 511
279 Kenya 28173 A 511 511
280 Kenya 28174 A 511 511
281 Kenya 28175 A 511 511
282 Kenya 28176 T 511 511
283 Kenya 28177 T 511 511
284 Kenya 28178 G 511 511
285 Kenya 28179 G 511 511
286 Kenya 28180 G 511 511
287 Kenya 28181 T 511 511
288 Kenya 28182 A 511 511
289 Kenya 28183 G 511 511
290 Kenya 28184 T 511 511
291 Kenya 28185 C 511 511
292 Kenya 28186 T 511 511
293 Kenya 28187 T 511 511
294 Kenya 28188 G 511 511
295 Kenya 28189 T 511 511
296 Kenya 28190 A 511 511
297 Kenya 28191 G 511 511
298 Kenya 28192 T 511 511
299 Kenya 28193 G 511 511
300 Kenya 28194 C 511 511
301 Kenya 28195 G 511 511
302 Kenya 28196 T 511 511
303 Kenya 28197 T 511 511
304 Kenya 28198 G 511 511
305 Kenya 28199 T 511 511
306 Kenya 28200 T 511 511
307 Kenya 28201 C 511 511
308 Kenya 28202 G 511 511
309 Kenya 28203 T 511 511
310 Kenya 28204 T 511 511
311 Kenya 28205 C 511 511
312 Kenya 28206 T 511 511
313 Kenya 28207 A 511 511
314 Kenya 28208 T 511 511
315 Kenya 28209 G 511 511
316 Kenya 28210 A 511 511
317 Kenya 28211 A 511 511
318 Kenya 28212 G 511 511
319 Kenya 28213 A 511 511
320 Kenya 28214 C 511 511
321 Kenya 28215 T 511 511
322 Kenya 28216 T 511 511
323 Kenya 28217 T 511 511
324 Kenya 28218 T 511 511
325 Kenya 28219 T 511 511
326 Kenya 28220 A 511 511
327 Kenya 28221 G 511 511
328 Kenya 28222 A 511 511
329 Kenya 28223 G 511 511
330 Kenya 28224 T 511 511
331 Kenya 28225 A 511 511
332 Kenya 28226 T 511 511
333 Kenya 28227 C 511 511
334 Kenya 28228 A 511 511
335 Kenya 28229 T 511 511
336 Kenya 28230 G 511 511
337 Kenya 28231 A 511 511
338 Kenya 28232 C T 511 510 Asp113Asp
339 Kenya 28233 G 511 511
340 Kenya 28234 T 511 511
341 Kenya 28235 T 511 511
342 Kenya 28236 C 511 511
343 Kenya 28237 G 511 511
344 Kenya 28238 T 511 511
345 Kenya 28239 G 511 511
346 Kenya 28240 T 511 511
347 Kenya 28241 T 511 511
348 Kenya 28242 G 511 511
349 Kenya 28243 T 511 511
350 Kenya 28244 T 511 511
351 Kenya 28245 T 511 511
352 Kenya 28246 T 511 511
353 Kenya 28247 A 511 511
354 Kenya 28248 G C 511 510 Asp119His
355 Kenya 28249 A 511 511
356 Kenya 28250 T 511 511
357 Kenya 28251 T 511 511
358 Kenya 28252 T 511 511
359 Kenya 28253 C T 511 508 Phe120Phe
360 Kenya 28254 A C 511 508 Ile121Leu
361 Kenya 28255 T 511 511
362 Kenya 28256 C 511 511
363 Kenya 28257 T 511 511
364 Kenya 28258 A 511 511
365 Kenya 28259 A 511 511