National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30               1                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 27894 A 53 53
1 Kazakhstan 27895 T 53 53
2 Kazakhstan 27896 G 53 53
3 Kazakhstan 27897 A 53 53
4 Kazakhstan 27898 A 53 53
5 Kazakhstan 27899 A 53 53
6 Kazakhstan 27900 T 53 53
7 Kazakhstan 27901 T 53 53
8 Kazakhstan 27902 T 53 53
9 Kazakhstan 27903 C 53 53
10 Kazakhstan 27904 T 53 53
11 Kazakhstan 27905 T 53 53
12 Kazakhstan 27906 G 53 53
13 Kazakhstan 27907 T 53 53
14 Kazakhstan 27908 T 53 53
15 Kazakhstan 27909 T 53 53
16 Kazakhstan 27910 T 53 53
17 Kazakhstan 27911 C 53 53
18 Kazakhstan 27912 T 53 53
19 Kazakhstan 27913 T 53 53
20 Kazakhstan 27914 A 53 53
21 Kazakhstan 27915 G 53 53
22 Kazakhstan 27916 G 53 53
23 Kazakhstan 27917 A 53 53
24 Kazakhstan 27918 A 53 53
25 Kazakhstan 27919 T 53 53
26 Kazakhstan 27920 C A 53 52 Ile9Ile
27 Kazakhstan 27921 A 53 53
28 Kazakhstan 27922 T 53 53
29 Kazakhstan 27923 C 53 53
30 Kazakhstan 27924 A 53 53
31 Kazakhstan 27925 C 53 53
32 Kazakhstan 27926 A 53 53
33 Kazakhstan 27927 A 53 53
34 Kazakhstan 27928 C 53 53
35 Kazakhstan 27929 T 53 53
36 Kazakhstan 27930 G 53 53
37 Kazakhstan 27931 T 53 53
38 Kazakhstan 27932 A 53 53
39 Kazakhstan 27933 G 53 53
40 Kazakhstan 27934 C 53 53
41 Kazakhstan 27935 T 53 53
42 Kazakhstan 27936 G 53 53
43 Kazakhstan 27937 C 53 53
44 Kazakhstan 27938 A 53 53
45 Kazakhstan 27939 T 53 53
46 Kazakhstan 27940 T 53 53
47 Kazakhstan 27941 T 53 53
48 Kazakhstan 27942 C 53 53
49 Kazakhstan 27943 A 53 53
50 Kazakhstan 27944 C 53 53
51 Kazakhstan 27945 C 53 53
52 Kazakhstan 27946 A 53 53
53 Kazakhstan 27947 A 53 53
54 Kazakhstan 27948 G 53 53
55 Kazakhstan 27949 A 53 53
56 Kazakhstan 27950 A 53 53
57 Kazakhstan 27951 T 53 53
58 Kazakhstan 27952 G 53 53
59 Kazakhstan 27953 T 53 53
60 Kazakhstan 27954 A 53 53
61 Kazakhstan 27955 G 53 53
62 Kazakhstan 27956 T 53 53
63 Kazakhstan 27957 T 53 53
64 Kazakhstan 27958 T 53 53
65 Kazakhstan 27959 A 53 53
66 Kazakhstan 27960 C 53 53
67 Kazakhstan 27961 A 53 53
68 Kazakhstan 27962 G 53 53
69 Kazakhstan 27963 T 53 53
70 Kazakhstan 27964 C 53 53
71 Kazakhstan 27965 A 53 53
72 Kazakhstan 27966 T 53 53
73 Kazakhstan 27967 G 53 53
74 Kazakhstan 27968 T 53 53
75 Kazakhstan 27969 A 53 53
76 Kazakhstan 27970 C 53 53
77 Kazakhstan 27971 T 53 53
78 Kazakhstan 27972 C 53 53
79 Kazakhstan 27973 A 53 53
80 Kazakhstan 27974 A 53 53
81 Kazakhstan 27975 C 53 53
82 Kazakhstan 27976 A 53 53
83 Kazakhstan 27977 T 53 53
84 Kazakhstan 27978 C 53 53
85 Kazakhstan 27979 A 53 53
86 Kazakhstan 27980 A 53 53
87 Kazakhstan 27981 C 53 53
88 Kazakhstan 27982 C 53 53
89 Kazakhstan 27983 A 53 53
90 Kazakhstan 27984 T 53 53
91 Kazakhstan 27985 A 53 53
92 Kazakhstan 27986 T 53 53
93 Kazakhstan 27987 G 53 53
94 Kazakhstan 27988 T 53 53
95 Kazakhstan 27989 A 53 53
96 Kazakhstan 27990 G 53 53
97 Kazakhstan 27991 T 53 53
98 Kazakhstan 27992 T 53 53
99 Kazakhstan 27993 G 53 53
100 Kazakhstan 27994 A 53 53
101 Kazakhstan 27995 T 53 53
102 Kazakhstan 27996 G 53 53
103 Kazakhstan 27997 A 53 53
104 Kazakhstan 27998 C 53 53
105 Kazakhstan 27999 C 53 53
106 Kazakhstan 28000 C 53 53
107 Kazakhstan 28001 G 53 53
108 Kazakhstan 28002 T 53 53
109 Kazakhstan 28003 G 53 53
110 Kazakhstan 28004 T 53 53
111 Kazakhstan 28005 C 53 53
112 Kazakhstan 28006 C 53 53
113 Kazakhstan 28007 T 53 53
114 Kazakhstan 28008 A 53 53
115 Kazakhstan 28009 T 53 53
116 Kazakhstan 28010 T 53 53
117 Kazakhstan 28011 C 53 53
118 Kazakhstan 28012 A 53 53
119 Kazakhstan 28013 C 53 53
120 Kazakhstan 28014 T 53 53
121 Kazakhstan 28015 T 53 53
122 Kazakhstan 28016 C 53 53
123 Kazakhstan 28017 T 53 53
124 Kazakhstan 28018 A 53 53
125 Kazakhstan 28019 T 53 53
126 Kazakhstan 28020 T 53 53
127 Kazakhstan 28021 C 53 53
128 Kazakhstan 28022 T 53 53
129 Kazakhstan 28023 A 53 53
130 Kazakhstan 28024 A 53 53
131 Kazakhstan 28025 A 53 53
132 Kazakhstan 28026 T 53 53
133 Kazakhstan 28027 G 53 53
134 Kazakhstan 28028 G 53 53
135 Kazakhstan 28029 T 53 53
136 Kazakhstan 28030 A 53 53
137 Kazakhstan 28031 T 53 53
138 Kazakhstan 28032 A 53 53
139 Kazakhstan 28033 T 53 53
140 Kazakhstan 28034 T 53 53
141 Kazakhstan 28035 A 53 53
142 Kazakhstan 28036 G 53 53
143 Kazakhstan 28037 A 53 53
144 Kazakhstan 28038 G 53 53
145 Kazakhstan 28039 T 53 53
146 Kazakhstan 28040 A 53 53
147 Kazakhstan 28041 G 53 53
148 Kazakhstan 28042 G 53 53
149 Kazakhstan 28043 A 53 53
150 Kazakhstan 28044 G 53 53
151 Kazakhstan 28045 C 53 53
152 Kazakhstan 28046 T 53 53
153 Kazakhstan 28047 A 53 53
154 Kazakhstan 28048 G 53 53
155 Kazakhstan 28049 A 53 53
156 Kazakhstan 28050 A 53 53
157 Kazakhstan 28051 A 53 53
158 Kazakhstan 28052 A 53 53
159 Kazakhstan 28053 T 53 53
160 Kazakhstan 28054 C 53 53
161 Kazakhstan 28055 A 53 53
162 Kazakhstan 28056 G 53 53
163 Kazakhstan 28057 C 53 53
164 Kazakhstan 28058 A 53 53
165 Kazakhstan 28059 C 53 53
166 Kazakhstan 28060 C 53 53
167 Kazakhstan 28061 T 53 53
168 Kazakhstan 28062 T 53 53
169 Kazakhstan 28063 T 53 53
170 Kazakhstan 28064 A 53 53
171 Kazakhstan 28065 A 53 53
172 Kazakhstan 28066 T 53 53
173 Kazakhstan 28067 T 53 53
174 Kazakhstan 28068 G 53 53
175 Kazakhstan 28069 A 53 53
176 Kazakhstan 28070 A 53 53
177 Kazakhstan 28071 T 53 53
178 Kazakhstan 28072 T 53 53
179 Kazakhstan 28073 G 53 53
180 Kazakhstan 28074 T 53 53
181 Kazakhstan 28075 G 53 53
182 Kazakhstan 28076 C 53 53
183 Kazakhstan 28077 G 53 53
184 Kazakhstan 28078 T 53 53
185 Kazakhstan 28079 G 53 53
186 Kazakhstan 28080 G 53 53
187 Kazakhstan 28081 A 53 53
188 Kazakhstan 28082 T 53 53
189 Kazakhstan 28083 G 53 53
190 Kazakhstan 28084 A 53 53
191 Kazakhstan 28085 G 53 53
192 Kazakhstan 28086 G 53 53
193 Kazakhstan 28087 C 53 53
194 Kazakhstan 28088 T 53 53
195 Kazakhstan 28089 G 53 53
196 Kazakhstan 28090 G 53 53
197 Kazakhstan 28091 T 53 53
198 Kazakhstan 28092 T 53 53
199 Kazakhstan 28093 C 53 53
200 Kazakhstan 28094 T 53 53
201 Kazakhstan 28095 A 53 53
202 Kazakhstan 28096 A 53 53
203 Kazakhstan 28097 A 53 53
204 Kazakhstan 28098 T 53 53
205 Kazakhstan 28099 C 53 53
206 Kazakhstan 28100 A 53 53
207 Kazakhstan 28101 C 53 53
208 Kazakhstan 28102 C 53 53
209 Kazakhstan 28103 C 53 53
210 Kazakhstan 28104 A 53 53
211 Kazakhstan 28105 T 53 53
212 Kazakhstan 28106 T 53 53
213 Kazakhstan 28107 C 53 53
214 Kazakhstan 28108 A 53 53
215 Kazakhstan 28109 G 53 53
216 Kazakhstan 28110 T 53 53
217 Kazakhstan 28111 A 53 53
218 Kazakhstan 28112 C 53 53
219 Kazakhstan 28113 A 53 53
220 Kazakhstan 28114 T 53 53
221 Kazakhstan 28115 C 53 53
222 Kazakhstan 28116 G 53 53
223 Kazakhstan 28117 A 53 53
224 Kazakhstan 28118 T 53 53
225 Kazakhstan 28119 A 53 53
226 Kazakhstan 28120 T 53 53
227 Kazakhstan 28121 C 53 53
228 Kazakhstan 28122 G 53 53
229 Kazakhstan 28123 G 53 53
230 Kazakhstan 28124 T 53 53
231 Kazakhstan 28125 A 53 53
232 Kazakhstan 28126 A 53 53
233 Kazakhstan 28127 T 53 53
234 Kazakhstan 28128 T 53 53
235 Kazakhstan 28129 A 53 53
236 Kazakhstan 28130 T 53 53
237 Kazakhstan 28131 A 53 53
238 Kazakhstan 28132 C 53 53
239 Kazakhstan 28133 A 53 53
240 Kazakhstan 28134 G 53 53
241 Kazakhstan 28135 T 53 53
242 Kazakhstan 28136 T 53 53
243 Kazakhstan 28137 T 53 53
244 Kazakhstan 28138 C 53 53
245 Kazakhstan 28139 C 53 53
246 Kazakhstan 28140 T 53 53
247 Kazakhstan 28141 G 53 53
248 Kazakhstan 28142 T 53 53
249 Kazakhstan 28143 T 53 53
250 Kazakhstan 28144 T C 53 34 Leu84Ser
251 Kazakhstan 28145 A 53 53
252 Kazakhstan 28146 C 53 53
253 Kazakhstan 28147 C 53 53
254 Kazakhstan 28148 T 53 53
255 Kazakhstan 28149 T 53 53
256 Kazakhstan 28150 T 53 53
257 Kazakhstan 28151 T 53 53
258 Kazakhstan 28152 A 53 53
259 Kazakhstan 28153 C 53 53
260 Kazakhstan 28154 A 53 53
261 Kazakhstan 28155 A 53 53
262 Kazakhstan 28156 T 53 53
263 Kazakhstan 28157 T 53 53
264 Kazakhstan 28158 A 53 53
265 Kazakhstan 28159 A 53 53
266 Kazakhstan 28160 T 53 53
267 Kazakhstan 28161 T 53 53
268 Kazakhstan 28162 G 53 53
269 Kazakhstan 28163 C 53 53
270 Kazakhstan 28164 C 53 53
271 Kazakhstan 28165 A 53 53
272 Kazakhstan 28166 G 53 53
273 Kazakhstan 28167 G 53 53
274 Kazakhstan 28168 A 53 53
275 Kazakhstan 28169 A 53 53
276 Kazakhstan 28170 C 53 53
277 Kazakhstan 28171 C 53 53
278 Kazakhstan 28172 T 53 53
279 Kazakhstan 28173 A 53 53
280 Kazakhstan 28174 A 53 53
281 Kazakhstan 28175 A 53 53
282 Kazakhstan 28176 T 53 53
283 Kazakhstan 28177 T 53 53
284 Kazakhstan 28178 G 53 53
285 Kazakhstan 28179 G 53 53
286 Kazakhstan 28180 G 53 53
287 Kazakhstan 28181 T 53 53
288 Kazakhstan 28182 A 53 53
289 Kazakhstan 28183 G 53 53
290 Kazakhstan 28184 T 53 53
291 Kazakhstan 28185 C 53 53
292 Kazakhstan 28186 T 53 53
293 Kazakhstan 28187 T 53 53
294 Kazakhstan 28188 G 53 53
295 Kazakhstan 28189 T 53 53
296 Kazakhstan 28190 A 53 53
297 Kazakhstan 28191 G 53 53
298 Kazakhstan 28192 T 53 53
299 Kazakhstan 28193 G 53 53
300 Kazakhstan 28194 C 53 53
301 Kazakhstan 28195 G 53 53
302 Kazakhstan 28196 T 53 53
303 Kazakhstan 28197 T 53 53
304 Kazakhstan 28198 G 53 53
305 Kazakhstan 28199 T 53 53
306 Kazakhstan 28200 T 53 53
307 Kazakhstan 28201 C 53 53
308 Kazakhstan 28202 G 53 53
309 Kazakhstan 28203 T 53 53
310 Kazakhstan 28204 T 53 53
311 Kazakhstan 28205 C 53 53
312 Kazakhstan 28206 T 53 53
313 Kazakhstan 28207 A 53 53
314 Kazakhstan 28208 T 53 53
315 Kazakhstan 28209 G 53 53
316 Kazakhstan 28210 A 53 53
317 Kazakhstan 28211 A 53 53
318 Kazakhstan 28212 G 53 53
319 Kazakhstan 28213 A 53 53
320 Kazakhstan 28214 C 53 53
321 Kazakhstan 28215 T 53 53
322 Kazakhstan 28216 T 53 53
323 Kazakhstan 28217 T 53 53
324 Kazakhstan 28218 T 53 53
325 Kazakhstan 28219 T 53 53
326 Kazakhstan 28220 A 53 53
327 Kazakhstan 28221 G 53 53
328 Kazakhstan 28222 A 53 53
329 Kazakhstan 28223 G 53 53
330 Kazakhstan 28224 T 53 53
331 Kazakhstan 28225 A 53 53
332 Kazakhstan 28226 T 53 53
333 Kazakhstan 28227 C 53 53
334 Kazakhstan 28228 A 53 53
335 Kazakhstan 28229 T 53 53
336 Kazakhstan 28230 G 53 53
337 Kazakhstan 28231 A 53 53
338 Kazakhstan 28232 C 53 53
339 Kazakhstan 28233 G 53 53
340 Kazakhstan 28234 T 53 53
341 Kazakhstan 28235 T 53 53
342 Kazakhstan 28236 C 53 53
343 Kazakhstan 28237 G 53 53
344 Kazakhstan 28238 T 53 53
345 Kazakhstan 28239 G 53 53
346 Kazakhstan 28240 T 53 53
347 Kazakhstan 28241 T 53 53
348 Kazakhstan 28242 G 53 53
349 Kazakhstan 28243 T 53 53
350 Kazakhstan 28244 T 53 53
351 Kazakhstan 28245 T 53 53
352 Kazakhstan 28246 T 53 53
353 Kazakhstan 28247 A 53 53
354 Kazakhstan 28248 G 53 53
355 Kazakhstan 28249 A 53 53
356 Kazakhstan 28250 T 53 53
357 Kazakhstan 28251 T 53 53
358 Kazakhstan 28252 T 53 53
359 Kazakhstan 28253 C 53 53
360 Kazakhstan 28254 A 53 53
361 Kazakhstan 28255 T 53 53
362 Kazakhstan 28256 C 53 53
363 Kazakhstan 28257 T 53 53
364 Kazakhstan 28258 A 53 53
365 Kazakhstan 28259 A 53 53