National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     365                                        
?                                              
A     15 2                             1 1 2    
C     21         3                              
D     22     2 1                               4
E 5   18     1 1         1         2            
F     24         3         2                   1
G 2   15   1   1   1                 1 1   1    
H     12             2               1         3
I     30               4   2             1 1    
K 1   15                                        
L     30         2         1           1   1    
M     3                                        
N     6                                        
P     21                   2     3     4 1      
Q 2   18             1     1       2 1          
R     12   2         1 1         1              
S     27 1       1     1   2   1 1   1 4        
T     15               3 1               1      
V     35         3     1   5 1             2    
W     3   1               1                    
Y     21   3     1   2                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 27894 A 9817 9817
1 Japan 27895 T 9818 9818
2 Japan 27896 G 9818 9818
3 Japan 27897 A 9818 9818
4 Japan 27898 A 9818 9818
5 Japan 27899 A 9818 9818
6 Japan 27900 T C 9818 9816 Phe3Leu
7 Japan 27901 T 9818 9818
8 Japan 27902 T C 9818 9817 Phe3Phe
9 Japan 27903 C 9818 9818
10 Japan 27904 T 9818 9818
11 Japan 27905 T 9818 9818
12 Japan 27906 G T 9818 9816 Val5Phe
13 Japan 27907 T 9818 9818
14 Japan 27908 T 9818 9818
15 Japan 27909 T 9818 9818
16 Japan 27910 T 9818 9818
17 Japan 27911 C T 9818 9791 Phe6Phe
18 Japan 27912 T 9818 9818
19 Japan 27913 T 9818 9818
20 Japan 27914 A 9818 9818
21 Japan 27915 G T,A 9818 9816 Gly8*-p.Gly8Arg
22 Japan 27916 G 9818 9818
23 Japan 27917 A T 9818 9817 Gly8Gly
24 Japan 27918 A 9818 9818
25 Japan 27919 T 9818 9818
26 Japan 27920 C T 9818 9815 Ile9Ile
27 Japan 27921 A 9818 9818
28 Japan 27922 T C 9818 9812 Ile10Thr
29 Japan 27923 C T 9818 9815 Ile10Ile
30 Japan 27924 A 9818 9818
31 Japan 27925 C A,T 9818 9807 Thr11Lys-p.Thr11Ile
32 Japan 27926 A 9818 9818
33 Japan 27927 A 9818 9818
34 Japan 27928 C 9818 9818
35 Japan 27929 T 9818 9818
36 Japan 27930 G A 9818 9816 Val13Ile
37 Japan 27931 T 9818 9818
38 Japan 27932 A 9818 9818
39 Japan 27933 G 9818 9817
40 Japan 27934 C 9818 9817
41 Japan 27935 T 9818 9817
42 Japan 27936 G A 9818 9816 Ala15Thr
43 Japan 27937 C 9818 9817
44 Japan 27938 A 9818 9817
45 Japan 27939 T C 9818 9815 Phe16Leu
46 Japan 27940 T 9818 9817
47 Japan 27941 T 9818 9817
48 Japan 27942 C T 9818 9813 His17Tyr
49 Japan 27943 A 9818 9818
50 Japan 27944 C T 9818 9809 His17His
51 Japan 27945 C 9818 9818
52 Japan 27946 A T 9818 9816 Gln18Leu
53 Japan 27947 A G 9818 9816 Gln18Gln
54 Japan 27948 G T 9818 9817 Glu19*
55 Japan 27949 A 9818 9818
56 Japan 27950 A 9818 9818
57 Japan 27951 T 9818 9818
58 Japan 27952 G T 9818 9817 Cys20Phe
59 Japan 27953 T 9818 9818
60 Japan 27954 A 9820 9820
61 Japan 27955 G A 9820 9819 Ser21Asn
62 Japan 27956 T 9820 9820
63 Japan 27957 T 9820 9820
64 Japan 27958 T 9820 9819
65 Japan 27959 A 9820 9819
66 Japan 27960 C T 9820 9818 Gln23*
67 Japan 27961 A 9820 9819
68 Japan 27962 G A 9820 9818 Gln23Gln
69 Japan 27963 T G 9820 9818 Ser24Ala
70 Japan 27964 C T 9820 9770 Ser24Leu
71 Japan 27965 A 9820 9820
72 Japan 27966 T 9820 9820
73 Japan 27967 G 9820 9820
74 Japan 27968 T 9820 9820
75 Japan 27969 A 9820 9820
76 Japan 27970 C T 9820 9819 Thr26Ile
77 Japan 27971 T 9820 9820
78 Japan 27972 C T 9820 9793 Gln27*
79 Japan 27973 A G 9820 9819 Gln27Arg
80 Japan 27974 A 9820 9820
81 Japan 27975 C T 9820 9818 His28Tyr
82 Japan 27976 A 9820 9819
83 Japan 27977 T 9820 9819
84 Japan 27978 C 9820 9819
85 Japan 27979 A 9820 9819
86 Japan 27980 A 9820 9819
87 Japan 27981 C 9820 9819
88 Japan 27982 C 9820 9819
89 Japan 27983 A 9820 9819
90 Japan 27984 T C 9820 9818 Tyr31His
91 Japan 27985 A 9820 9819
92 Japan 27986 T 9820 9819
93 Japan 27987 G T 9820 9817 Val32Leu
94 Japan 27988 T 9820 9819
95 Japan 27989 A 9820 9819
96 Japan 27990 G 9820 9819
97 Japan 27991 T 9820 9819
98 Japan 27992 T 9820 9819
99 Japan 27993 G 9820 9819
100 Japan 27994 A 9820 9819
101 Japan 27995 T 9820 9819
102 Japan 27996 G T 9820 9818 Asp35Tyr
103 Japan 27997 A 9820 9819
104 Japan 27998 C T,A 9820 9813 Asp35Glu-p.Asp35Asp
105 Japan 27999 C A,T 9820 9815 Pro36Thr-p.Pro36Ser
106 Japan 28000 C T 9820 9787 Pro36Leu
107 Japan 28001 G T,A 9820 9801 Pro36Pro-p.Pro36Pro
108 Japan 28002 T 9820 9819
109 Japan 28003 G T 9820 9817 Cys37Phe
110 Japan 28004 T 9820 9819
111 Japan 28005 C T 9820 9817 Pro38Ser
112 Japan 28006 C 9820 9819
113 Japan 28007 T 9820 9819
114 Japan 28008 A 9820 9819
115 Japan 28009 T 9820 9819
116 Japan 28010 T 9820 9819
117 Japan 28011 C T 9820 9818 His40Tyr
118 Japan 28012 A 9820 9819
119 Japan 28013 C T 9820 9818 His40His
120 Japan 28014 T 9819 9818
121 Japan 28015 T 9819 9818
122 Japan 28016 C 9819 9818
123 Japan 28017 T 9819 9818
124 Japan 28018 A T,G 9819 9816 Tyr42Phe-p.Tyr42Cys
125 Japan 28019 T 9819 9818
126 Japan 28020 T 9819 9818
127 Japan 28021 C 9818 9817
128 Japan 28022 T C 9818 9817 Ser43Ser
129 Japan 28023 A 9819 9819
130 Japan 28024 A 9819 9819
131 Japan 28025 A 9819 9819
132 Japan 28026 T 9819 9819
133 Japan 28027 G T 9819 9818 Trp45Leu
134 Japan 28028 G T 9819 9818 Trp45Cys
135 Japan 28029 T C 9819 9818 Tyr46His
136 Japan 28030 A G 9819 9818 Tyr46Cys
137 Japan 28031 T 9819 9819
138 Japan 28032 A G 9819 9817 Ile47Val
139 Japan 28033 T 9819 9819
140 Japan 28034 T 9819 9819
141 Japan 28035 A 9819 9819
142 Japan 28036 G 9819 9819
143 Japan 28037 A 9819 9819
144 Japan 28038 G 9819 9819
145 Japan 28039 T 9819 9819
146 Japan 28040 A 9819 9819
147 Japan 28041 G T 9819 9814 Gly50*
148 Japan 28042 G A 9819 9818 Gly50Glu
149 Japan 28043 A 9819 9819
150 Japan 28044 G 9819 9819
151 Japan 28045 C T 9819 9815 Ala51Val
152 Japan 28046 T 9819 9819
153 Japan 28047 A 9819 9819
154 Japan 28048 G T 9819 9794 Arg52Ile
155 Japan 28049 A 9819 9819
156 Japan 28050 A 9819 9819
157 Japan 28051 A 9819 9819
158 Japan 28052 A 9819 9819
159 Japan 28053 T 9819 9819
160 Japan 28054 C T 9819 9784 Ser54Leu
161 Japan 28055 A 9819 9819
162 Japan 28056 G 9819 9819
163 Japan 28057 C 9819 9819
164 Japan 28058 A 9819 9819
165 Japan 28059 C T 9819 9814 Pro56Ser
166 Japan 28060 C 9819 9819
167 Japan 28061 T C 9819 9817 Pro56Pro
168 Japan 28062 T 9819 9819
169 Japan 28063 T 9819 9819
170 Japan 28064 A T 9819 9818 Leu57Phe
171 Japan 28065 A C 9819 9818 Ile58Leu
172 Japan 28066 T 9819 9819
173 Japan 28067 T 9819 9819
174 Japan 28068 G T 9819 9818 Glu59*
175 Japan 28069 A 9819 9819
176 Japan 28070 A 9819 9819
177 Japan 28071 T 9819 9819
178 Japan 28072 T 9819 9819
179 Japan 28073 G A 9819 9817 Leu60Leu
180 Japan 28074 T 9819 9819
181 Japan 28075 G 9819 9819
182 Japan 28076 C 9819 9819
183 Japan 28077 G T,C,A 9819 9807 Val62Leu-p.Val62Met
184 Japan 28078 T 9819 9819
185 Japan 28079 G T 9819 9813 Val62Val
186 Japan 28080 G T 9819 9817 Asp63Tyr
187 Japan 28081 A 9819 9819
188 Japan 28082 T 9819 9819
189 Japan 28083 G T 9819 9818 Glu64*
190 Japan 28084 A 9819 9819
191 Japan 28085 G T 9821 9820 Glu64Asp
192 Japan 28086 G T 9821 9811 Ala65Ser
193 Japan 28087 C T 9821 9813 Ala65Val
194 Japan 28088 T G,C 9821 9818 Ala65Ala-p.Ala65Ala
195 Japan 28089 G A,T 9821 9818 Gly66Ser-p.Gly66Cys
196 Japan 28090 G 9821 9821
197 Japan 28091 T 9821 9821
198 Japan 28092 T 9821 9821
199 Japan 28093 C T 9821 9811 Ser67Phe
200 Japan 28094 T C 9821 9820 Ser67Ser
201 Japan 28095 A T 9821 9813 Lys68*
202 Japan 28096 A 9821 9821
203 Japan 28097 A 9821 9821
204 Japan 28098 T C 9821 9820 Ser69Pro
205 Japan 28099 C 9821 9821
206 Japan 28100 A G 9821 9820 Ser69Ser
207 Japan 28101 C 9821 9821
208 Japan 28102 C T 9821 9819 Pro70Leu
209 Japan 28103 C 9821 9821
210 Japan 28104 A 9821 9821
211 Japan 28105 T 9823 9823
212 Japan 28106 T 9823 9823
213 Japan 28107 C 9823 9823
214 Japan 28108 A 9823 9823
215 Japan 28109 G T 9823 9821 Gln72His
216 Japan 28110 T 9823 9823
217 Japan 28111 A G 9823 9799 Tyr73Cys
218 Japan 28112 C 9823 9823
219 Japan 28113 A 9823 9823
220 Japan 28114 T 9823 9823
221 Japan 28115 C T 9823 9822 Ile74Ile
222 Japan 28116 G 9823 9823
223 Japan 28117 A 9823 9823
224 Japan 28118 T 9823 9823
225 Japan 28119 A 9823 9823
226 Japan 28120 T 9823 9823
227 Japan 28121 C 9823 9823
228 Japan 28122 G 9823 9823
229 Japan 28123 G T 9823 9822 Gly77Val
230 Japan 28124 T 9823 9823
231 Japan 28125 A 9823 9823
232 Japan 28126 A 9823 9823
233 Japan 28127 T 9823 9823
234 Japan 28128 T 9823 9823
235 Japan 28129 A 9823 9823
236 Japan 28130 T 9823 9823
237 Japan 28131 A 9823 9823
238 Japan 28132 C 9823 9823
239 Japan 28133 A T 9823 9822 Thr80Thr
240 Japan 28134 G T 9824 9823 Val81Phe
241 Japan 28135 T 9824 9824
242 Japan 28136 T 9824 9824
243 Japan 28137 T 9824 9824
244 Japan 28138 C 9824 9824
245 Japan 28139 C 9824 9824
246 Japan 28140 T 9824 9824
247 Japan 28141 G 9824 9824
248 Japan 28142 T 9824 9824
249 Japan 28143 T 9824 9824
250 Japan 28144 T C 9824 9637 Leu84Ser
251 Japan 28145 A 9824 9824
252 Japan 28146 C 9824 9824
253 Japan 28147 C 9824 9824
254 Japan 28148 T 9824 9824
255 Japan 28149 T 9824 9824
256 Japan 28150 T 9824 9824
257 Japan 28151 T 9824 9824
258 Japan 28152 A 9824 9824
259 Japan 28153 C T 9824 9822 Thr87Ile
260 Japan 28154 A 9824 9824
261 Japan 28155 A 9824 9824
262 Japan 28156 T 9824 9824
263 Japan 28157 T 9824 9824
264 Japan 28158 A 9824 9824
265 Japan 28159 A 9824 9824
266 Japan 28160 T 9824 9824
267 Japan 28161 T 9824 9824
268 Japan 28162 G 9824 9824
269 Japan 28163 C 9824 9824
270 Japan 28164 C 9824 9824
271 Japan 28165 A 9824 9824
272 Japan 28166 G 9824 9824
273 Japan 28167 G A 9824 9820 Glu92Lys
274 Japan 28168 A 9824 9824
275 Japan 28169 A G 9824 9823 Glu92Glu
276 Japan 28170 C T 9824 9822 Pro93Ser
277 Japan 28171 C 9824 9824
278 Japan 28172 T 9824 9824
279 Japan 28173 A 9824 9824
280 Japan 28174 A 9824 9824
281 Japan 28175 A 9824 9824
282 Japan 28176 T 9824 9824
283 Japan 28177 T 9824 9824
284 Japan 28178 G T 9824 9804 Leu95Phe
285 Japan 28179 G 9824 9824
286 Japan 28180 G 9824 9824
287 Japan 28181 T 9824 9824
288 Japan 28182 A C 9824 9822 Ser97Arg
289 Japan 28183 G T 9824 9822 Ser97Ile
290 Japan 28184 T 9824 9823
291 Japan 28185 C 9824 9823
292 Japan 28186 T 9824 9823
293 Japan 28187 T 9824 9823
294 Japan 28188 G T 9824 9822 Val99Leu
295 Japan 28189 T 9824 9824
296 Japan 28190 A T 9824 9823 Val99Val
297 Japan 28191 G T 9824 9823 Val100Leu
298 Japan 28192 T 9824 9824
299 Japan 28193 G 9824 9824
300 Japan 28194 C T 9824 9821 Arg101Cys
301 Japan 28195 G C 9825 9823 Arg101Pro
302 Japan 28196 T 9825 9825
303 Japan 28197 T 9825 9825
304 Japan 28198 G T 9825 9823 Cys102Phe
305 Japan 28199 T 9825 9825
306 Japan 28200 T 9825 9825
307 Japan 28201 C 9825 9825
308 Japan 28202 G A 9825 9822 Ser103Ser
309 Japan 28203 T 9825 9825
310 Japan 28204 T A 9825 9824 Phe104Tyr
311 Japan 28205 C 9826 9826
312 Japan 28206 T 9826 9826
313 Japan 28207 A 9826 9826
314 Japan 28208 T 9826 9826
315 Japan 28209 G C,T 9826 9823 Glu106*-p.Glu106Gln
316 Japan 28210 A 9826 9826
317 Japan 28211 A 9826 9826
318 Japan 28212 G 9826 9826
319 Japan 28213 A 9826 9826
320 Japan 28214 C 9826 9826
321 Japan 28215 T 9826 9826
322 Japan 28216 T 9826 9826
323 Japan 28217 T 9826 9826
324 Japan 28218 T 9826 9826
325 Japan 28219 T 9826 9826
326 Japan 28220 A 9826 9826
327 Japan 28221 G C,T 9826 9813 Glu110*-p.Glu110Gln
328 Japan 28222 A 9826 9826
329 Japan 28223 G 9826 9826
330 Japan 28224 T 9826 9826
331 Japan 28225 A 9826 9826
332 Japan 28226 T 9826 9826
333 Japan 28227 C 9826 9826
334 Japan 28228 A G 9826 9812 His112Arg
335 Japan 28229 T 9826 9826
336 Japan 28230 G T 9826 9825 Asp113Tyr
337 Japan 28231 A 9826 9826
338 Japan 28232 C T 9826 9825 Asp113Asp
339 Japan 28233 G 9826 9826
340 Japan 28234 T 9826 9826
341 Japan 28235 T 9826 9826
342 Japan 28236 C T 9826 9825 Arg115Cys
343 Japan 28237 G A 9826 9825 Arg115His
344 Japan 28238 T 9826 9826
345 Japan 28239 G 9826 9826
346 Japan 28240 T 9826 9826
347 Japan 28241 T 9826 9826
348 Japan 28242 G T 9826 9825 Val117Phe
349 Japan 28243 T 9826 9826
350 Japan 28244 T 9826 9826
351 Japan 28245 T G 9826 9825 Leu118Val
352 Japan 28246 T 9826 9826
353 Japan 28247 A 9826 9826
354 Japan 28248 G T 9826 9825 Asp119Tyr
355 Japan 28249 A 9826 9826
356 Japan 28250 T 9826 9826
357 Japan 28251 T 9816 9816
358 Japan 28252 T 9816 9816
359 Japan 28253 C T 9816 9753 Phe120Phe
360 Japan 28254 A C 9816 9814 Ile121Leu
361 Japan 28255 T 9816 9816
362 Japan 28256 C A 9816 9814 Ile121Ile
363 Japan 28257 T 9816 9816
364 Japan 28258 A 9816 9816
365 Japan 28259 A 9816 9816