National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21         1                             1
D     22     1     1           1                
E 2   18                           1            
F     24         2         1                    
G     15                                        
H     12             1                          
I     30               1   1                    
K     15                                        
L     30                   2           1        
M     3                                        
N     6                                        
P     21                   1     1 1   1        
Q 3   18                           1            
R     12             1 1                        
S     27         1     1   1                    
T     15               1                        
V     36                   1               2    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 27894 A 1205 1205
1 Italy 27895 T 1205 1205
2 Italy 27896 G 1206 1206
3 Italy 27897 A 1206 1206
4 Italy 27898 A 1206 1206
5 Italy 27899 A 1206 1206
6 Italy 27900 T 1206 1206
7 Italy 27901 T 1206 1206
8 Italy 27902 T 1206 1206
9 Italy 27903 C 1206 1206
10 Italy 27904 T 1206 1206
11 Italy 27905 T 1206 1206
12 Italy 27906 G 1206 1206
13 Italy 27907 T 1206 1206
14 Italy 27908 T 1206 1206
15 Italy 27909 T 1206 1206
16 Italy 27910 T 1206 1206
17 Italy 27911 C T 1206 1205 Phe6Phe
18 Italy 27912 T 1206 1206
19 Italy 27913 T 1206 1206
20 Italy 27914 A 1206 1206
21 Italy 27915 G 1206 1206
22 Italy 27916 G 1206 1206
23 Italy 27917 A 1206 1206
24 Italy 27918 A 1206 1206
25 Italy 27919 T 1206 1206
26 Italy 27920 C T 1206 1205 Ile9Ile
27 Italy 27921 A 1206 1206
28 Italy 27922 T 1206 1206
29 Italy 27923 C 1206 1206
30 Italy 27924 A 1206 1206
31 Italy 27925 C 1206 1206
32 Italy 27926 A 1206 1206
33 Italy 27927 A 1206 1206
34 Italy 27928 C 1206 1206
35 Italy 27929 T 1206 1206
36 Italy 27930 G 1206 1206
37 Italy 27931 T 1206 1206
38 Italy 27932 A 1206 1206
39 Italy 27933 G 1206 1206
40 Italy 27934 C 1206 1206
41 Italy 27935 T 1206 1206
42 Italy 27936 G 1206 1206
43 Italy 27937 C 1206 1206
44 Italy 27938 A 1206 1206
45 Italy 27939 T 1206 1206
46 Italy 27940 T 1206 1206
47 Italy 27941 T 1206 1206
48 Italy 27942 C 1206 1206
49 Italy 27943 A 1206 1206
50 Italy 27944 C T 1206 1189 His17His
51 Italy 27945 C T 1206 1204 Gln18*
52 Italy 27946 A 1206 1206
53 Italy 27947 A 1206 1206
54 Italy 27948 G 1206 1206
55 Italy 27949 A 1206 1206
56 Italy 27950 A 1206 1206
57 Italy 27951 T 1206 1206
58 Italy 27952 G 1206 1206
59 Italy 27953 T 1206 1206
60 Italy 27954 A 1206 1206
61 Italy 27955 G 1206 1206
62 Italy 27956 T 1206 1206
63 Italy 27957 T 1206 1206
64 Italy 27958 T 1206 1206
65 Italy 27959 A 1206 1206
66 Italy 27960 C 1206 1206
67 Italy 27961 A 1206 1206
68 Italy 27962 G 1206 1206
69 Italy 27963 T 1206 1206
70 Italy 27964 C 1206 1206
71 Italy 27965 A 1206 1206
72 Italy 27966 T 1206 1206
73 Italy 27967 G A 1206 1205 Cys25Tyr
74 Italy 27968 T 1206 1206
75 Italy 27969 A 1206 1206
76 Italy 27970 C T 1206 1205 Thr26Ile
77 Italy 27971 T 1206 1206
78 Italy 27972 C T 1206 1190 Gln27*
79 Italy 27973 A 1206 1206
80 Italy 27974 A G 1206 1205 Gln27Gln
81 Italy 27975 C 1206 1206
82 Italy 27976 A 1206 1206
83 Italy 27977 T 1206 1206
84 Italy 27978 C T 1206 1205 Gln29*
85 Italy 27979 A 1206 1206
86 Italy 27980 A 1206 1206
87 Italy 27981 C 1206 1206
88 Italy 27982 C T,A 1206 1186 Pro30Leu-p.Pro30Gln
89 Italy 27983 A G 1206 1203 Pro30Pro
90 Italy 27984 T 1206 1206
91 Italy 27985 A 1206 1206
92 Italy 27986 T 1206 1206
93 Italy 27987 G 1206 1206
94 Italy 27988 T 1206 1206
95 Italy 27989 A 1206 1206
96 Italy 27990 G 1206 1206
97 Italy 27991 T 1206 1206
98 Italy 27992 T 1206 1206
99 Italy 27993 G 1206 1206
100 Italy 27994 A 1206 1206
101 Italy 27995 T 1206 1206
102 Italy 27996 G A 1206 1205 Asp35Asn
103 Italy 27997 A 1206 1206
104 Italy 27998 C T 1206 1205 Asp35Asp
105 Italy 27999 C T 1206 1204 Pro36Ser
106 Italy 28000 C 1206 1206
107 Italy 28001 G 1206 1205
108 Italy 28002 T 1206 1206
109 Italy 28003 G 1204 1204
110 Italy 28004 T 1204 1204
111 Italy 28005 C 1204 1204
112 Italy 28006 C 1204 1204
113 Italy 28007 T 1204 1204
114 Italy 28008 A 1204 1204
115 Italy 28009 T 1204 1204
116 Italy 28010 T 1204 1204
117 Italy 28011 C 1204 1204
118 Italy 28012 A 1204 1204
119 Italy 28013 C 1204 1204
120 Italy 28014 T 1204 1204
121 Italy 28015 T 1204 1204
122 Italy 28016 C 1204 1204
123 Italy 28017 T 1204 1204
124 Italy 28018 A 1204 1204
125 Italy 28019 T 1204 1204
126 Italy 28020 T 1204 1204
127 Italy 28021 C 1204 1204
128 Italy 28022 T 1204 1204
129 Italy 28023 A 1204 1204
130 Italy 28024 A 1204 1204
131 Italy 28025 A 1204 1199
132 Italy 28026 T 1204 1204
133 Italy 28027 G 1204 1204
134 Italy 28028 G 1204 1204
135 Italy 28029 T 1204 1204
136 Italy 28030 A 1204 1204
137 Italy 28031 T 1204 1204
138 Italy 28032 A 1204 1204
139 Italy 28033 T 1204 1204
140 Italy 28034 T 1204 1204
141 Italy 28035 A 1204 1204
142 Italy 28036 G 1204 1204
143 Italy 28037 A 1204 1204
144 Italy 28038 G 1204 1204
145 Italy 28039 T 1204 1204
146 Italy 28040 A 1204 1204
147 Italy 28041 G 1204 1204
148 Italy 28042 G 1204 1204
149 Italy 28043 A 1204 1204
150 Italy 28044 G 1204 1204
151 Italy 28045 C 1204 1204
152 Italy 28046 T 1204 1204
153 Italy 28047 A 1204 1204
154 Italy 28048 G T 1204 1188 Arg52Ile
155 Italy 28049 A 1204 1204
156 Italy 28050 A 1204 1204
157 Italy 28051 A 1204 1204
158 Italy 28052 A 1204 1204
159 Italy 28053 T 1204 1204
160 Italy 28054 C 1204 1204
161 Italy 28055 A 1204 1204
162 Italy 28056 G 1204 1204
163 Italy 28057 C 1204 1204
164 Italy 28058 A 1204 1204
165 Italy 28059 C 1204 1204
166 Italy 28060 C 1204 1204
167 Italy 28061 T 1204 1204
168 Italy 28062 T 1204 1204
169 Italy 28063 T 1204 1204
170 Italy 28064 A 1204 1204
171 Italy 28065 A 1204 1204
172 Italy 28066 T 1204 1204
173 Italy 28067 T 1204 1204
174 Italy 28068 G 1204 1204
175 Italy 28069 A 1204 1204
176 Italy 28070 A 1204 1204
177 Italy 28071 T 1204 1204
178 Italy 28072 T 1204 1204
179 Italy 28073 G 1204 1204
180 Italy 28074 T 1204 1204
181 Italy 28075 G 1204 1204
182 Italy 28076 C 1204 1204
183 Italy 28077 G T 1204 1203 Val62Leu
184 Italy 28078 T 1204 1204
185 Italy 28079 G T 1204 1200 Val62Val
186 Italy 28080 G 1204 1204
187 Italy 28081 A 1204 1204
188 Italy 28082 T 1204 1204
189 Italy 28083 G T 1204 1202 Glu64*
190 Italy 28084 A 1204 1204
191 Italy 28085 G 1204 1204
192 Italy 28086 G 1204 1204
193 Italy 28087 C 1204 1204
194 Italy 28088 T 1204 1204
195 Italy 28089 G 1204 1204
196 Italy 28090 G 1204 1204
197 Italy 28091 T 1204 1204
198 Italy 28092 T 1204 1204
199 Italy 28093 C T 1204 1202 Ser67Phe
200 Italy 28094 T 1204 1204
201 Italy 28095 A 1204 1203
202 Italy 28096 A 1204 1201
203 Italy 28097 A 1204 1201
204 Italy 28098 T 1204 1203
205 Italy 28099 C 1204 1203
206 Italy 28100 A 1204 1203
207 Italy 28101 C 1204 1203
208 Italy 28102 C 1204 1202
209 Italy 28103 C 1204 1202
210 Italy 28104 A 1204 1201
211 Italy 28105 T 1204 1201
212 Italy 28106 T 1204 1201
213 Italy 28107 C 1204 1201
214 Italy 28108 A 1204 1202
215 Italy 28109 G 1204 1202
216 Italy 28110 T 1204 1202
217 Italy 28111 A G 1204 1187 Tyr73Cys
218 Italy 28112 C 1204 1203
219 Italy 28113 A 1204 1203
220 Italy 28114 T 1204 1203
221 Italy 28115 C 1204 1203
222 Italy 28116 G 1204 1203
223 Italy 28117 A 1204 1203
224 Italy 28118 T 1204 1203
225 Italy 28119 A 1204 1203
226 Italy 28120 T 1204 1203
227 Italy 28121 C 1204 1204
228 Italy 28122 G 1204 1204
229 Italy 28123 G 1204 1204
230 Italy 28124 T 1204 1204
231 Italy 28125 A 1204 1204
232 Italy 28126 A 1204 1204
233 Italy 28127 T 1204 1204
234 Italy 28128 T 1204 1204
235 Italy 28129 A 1204 1204
236 Italy 28130 T 1204 1204
237 Italy 28131 A 1204 1204
238 Italy 28132 C 1204 1204
239 Italy 28133 A 1204 1204
240 Italy 28134 G 1204 1204
241 Italy 28135 T 1204 1204
242 Italy 28136 T C 1204 1203 Val81Val
243 Italy 28137 T 1204 1204
244 Italy 28138 C 1204 1204
245 Italy 28139 C 1204 1204
246 Italy 28140 T 1204 1204
247 Italy 28141 G T 1204 1201 Cys83Phe
248 Italy 28142 T 1204 1204
249 Italy 28143 T 1204 1204
250 Italy 28144 T C 1204 1187 Leu84Ser
251 Italy 28145 A G 1204 1202 Leu84Leu
252 Italy 28146 C 1204 1204
253 Italy 28147 C 1204 1204
254 Italy 28148 T 1204 1204
255 Italy 28149 T 1204 1204
256 Italy 28150 T 1204 1204
257 Italy 28151 T 1204 1204
258 Italy 28152 A 1204 1204
259 Italy 28153 C 1204 1204
260 Italy 28154 A 1204 1204
261 Italy 28155 A 1204 1204
262 Italy 28156 T 1204 1204
263 Italy 28157 T 1204 1204
264 Italy 28158 A 1204 1204
265 Italy 28159 A 1204 1204
266 Italy 28160 T 1204 1204
267 Italy 28161 T 1204 1204
268 Italy 28162 G 1204 1204
269 Italy 28163 C 1204 1204
270 Italy 28164 C 1204 1204
271 Italy 28165 A 1204 1204
272 Italy 28166 G 1204 1204
273 Italy 28167 G 1204 1204
274 Italy 28168 A 1204 1204
275 Italy 28169 A 1204 1204
276 Italy 28170 C 1204 1204
277 Italy 28171 C 1204 1204
278 Italy 28172 T 1204 1204
279 Italy 28173 A 1204 1204
280 Italy 28174 A 1204 1204
281 Italy 28175 A 1204 1204
282 Italy 28176 T 1204 1204
283 Italy 28177 T 1204 1204
284 Italy 28178 G 1204 1204
285 Italy 28179 G 1204 1204
286 Italy 28180 G 1204 1204
287 Italy 28181 T 1204 1204
288 Italy 28182 A 1204 1203
289 Italy 28183 G T 1204 1202 Ser97Ile
290 Italy 28184 T 1204 1203
291 Italy 28185 C 1204 1203
292 Italy 28186 T 1204 1203
293 Italy 28187 T 1204 1204
294 Italy 28188 G 1204 1204
295 Italy 28189 T 1204 1204
296 Italy 28190 A 1204 1204
297 Italy 28191 G 1204 1204
298 Italy 28192 T 1204 1204
299 Italy 28193 G 1204 1204
300 Italy 28194 C 1204 1204
301 Italy 28195 G A 1204 1203 Arg101His
302 Italy 28196 T 1204 1204
303 Italy 28197 T 1204 1204
304 Italy 28198 G 1204 1204
305 Italy 28199 T 1204 1204
306 Italy 28200 T 1204 1204
307 Italy 28201 C T 1204 1203 Ser103Leu
308 Italy 28202 G 1204 1204
309 Italy 28203 T 1204 1204
310 Italy 28204 T 1204 1204
311 Italy 28205 C 1204 1204
312 Italy 28206 T 1204 1204
313 Italy 28207 A 1204 1202
314 Italy 28208 T 1204 1201
315 Italy 28209 G T,C 1204 1199 Glu106*-p.Glu106Gln
316 Italy 28210 A 1204 1201
317 Italy 28211 A 1204 1201
318 Italy 28212 G 1204 1201
319 Italy 28213 A 1204 1201
320 Italy 28214 C 1204 1202
321 Italy 28215 T 1204 1202
322 Italy 28216 T 1204 1202
323 Italy 28217 T 1204 1202
324 Italy 28218 T 1204 1202
325 Italy 28219 T 1204 1202
326 Italy 28220 A G 1204 1201 Leu109Leu
327 Italy 28221 G 1204 1202
328 Italy 28222 A 1204 1202
329 Italy 28223 G 1204 1202
330 Italy 28224 T 1204 1202
331 Italy 28225 A 1204 1202
332 Italy 28226 T 1204 1202
333 Italy 28227 C 1204 1204
334 Italy 28228 A 1204 1204
335 Italy 28229 T 1204 1204
336 Italy 28230 G 1204 1204
337 Italy 28231 A 1204 1204
338 Italy 28232 C 1204 1204
339 Italy 28233 G 1204 1204
340 Italy 28234 T 1204 1204
341 Italy 28235 T 1204 1204
342 Italy 28236 C 1204 1204
343 Italy 28237 G 1204 1204
344 Italy 28238 T 1204 1204
345 Italy 28239 G 1204 1204
346 Italy 28240 T 1204 1204
347 Italy 28241 T 1204 1204
348 Italy 28242 G 1204 1204
349 Italy 28243 T 1204 1204
350 Italy 28244 T 1204 1204
351 Italy 28245 T 1204 1204
352 Italy 28246 T 1204 1204
353 Italy 28247 A 1204 1204
354 Italy 28248 G 1204 1204
355 Italy 28249 A G 1204 1203 Asp119Gly
356 Italy 28250 T 1204 1204
357 Italy 28251 T C 1204 1202 Phe120Leu
358 Italy 28252 T 1204 1204
359 Italy 28253 C T 1204 1200 Phe120Phe
360 Italy 28254 A C 1204 1194 Ile121Leu
361 Italy 28255 T 1204 1204
362 Italy 28256 C 1204 1204
363 Italy 28257 T 1204 1204
364 Italy 28258 A 1204 1204
365 Italy 28259 A 1204 1204