National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                 1 2    
C     21   2     1                              
D     22       1                               2
E 2   18       1                                
F     24         1                              
G     15                               1        
H     12             1     1                   2
I     30               1                 1      
K 1   15                                        
L     30         2                     2        
M     3                                        
N     6                                        
P     21                         1              
Q 2   18                   1         1          
R     12               1                        
S     27 1       1               2     1        
T     15               3         1       1      
V     36                   1                    
W     3                   1                    
Y     21   1         1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 27894 A 1940 1940
1 Ireland 27895 T 1943 1943
2 Ireland 27896 G 1943 1943
3 Ireland 27897 A 1943 1943
4 Ireland 27898 A 1943 1943
5 Ireland 27899 A 1943 1943
6 Ireland 27900 T 1943 1943
7 Ireland 27901 T 1943 1943
8 Ireland 27902 T 1943 1943
9 Ireland 27903 C 1943 1943
10 Ireland 27904 T 1943 1943
11 Ireland 27905 T 1943 1943
12 Ireland 27906 G 1943 1943
13 Ireland 27907 T 1943 1943
14 Ireland 27908 T 1943 1943
15 Ireland 27909 T 1943 1943
16 Ireland 27910 T 1943 1943
17 Ireland 27911 C 1943 1943
18 Ireland 27912 T 1943 1943
19 Ireland 27913 T 1943 1943
20 Ireland 27914 A 1943 1943
21 Ireland 27915 G 1943 1943
22 Ireland 27916 G 1943 1943
23 Ireland 27917 A 1943 1943
24 Ireland 27918 A 1943 1943
25 Ireland 27919 T 1943 1943
26 Ireland 27920 C 1943 1943
27 Ireland 27921 A 1943 1943
28 Ireland 27922 T 1943 1943
29 Ireland 27923 C 1943 1943
30 Ireland 27924 A C 1943 1918 Thr11Pro
31 Ireland 27925 C T 1943 1939 Thr11Ile
32 Ireland 27926 A 1943 1943
33 Ireland 27927 A 1943 1943
34 Ireland 27928 C 1943 1943
35 Ireland 27929 T 1943 1943
36 Ireland 27930 G 1943 1943
37 Ireland 27931 T 1943 1943
38 Ireland 27932 A 1943 1943
39 Ireland 27933 G A 1943 1941 Ala14Thr
40 Ireland 27934 C 1943 1943
41 Ireland 27935 T 1944 1944
42 Ireland 27936 G 1944 1944
43 Ireland 27937 C 1944 1944
44 Ireland 27938 A 1944 1944
45 Ireland 27939 T 1944 1944
46 Ireland 27940 T 1944 1944
47 Ireland 27941 T 1944 1944
48 Ireland 27942 C T 1944 1943 His17Tyr
49 Ireland 27943 A 1944 1944
50 Ireland 27944 C T 1944 1434 His17His
51 Ireland 27945 C T 1944 1943 Gln18*
52 Ireland 27946 A G 1944 1918 Gln18Arg
53 Ireland 27947 A 1944 1944
54 Ireland 27948 G T 1944 1943 Glu19*
55 Ireland 27949 A 1944 1944
56 Ireland 27950 A 1944 1944
57 Ireland 27951 T 1944 1944
58 Ireland 27952 G 1944 1944
59 Ireland 27953 T 1945 1945
60 Ireland 27954 A 1945 1945
61 Ireland 27955 G 1945 1945
62 Ireland 27956 T 1945 1945
63 Ireland 27957 T 1945 1945
64 Ireland 27958 T 1945 1945
65 Ireland 27959 A 1945 1945
66 Ireland 27960 C 1945 1945
67 Ireland 27961 A 1945 1945
68 Ireland 27962 G 1945 1945
69 Ireland 27963 T 1945 1945
70 Ireland 27964 C 1945 1945
71 Ireland 27965 A 1945 1945
72 Ireland 27966 T 1945 1945
73 Ireland 27967 G T 1945 1944 Cys25Phe
74 Ireland 27968 T 1945 1945
75 Ireland 27969 A 1945 1945
76 Ireland 27970 C T 1945 1944 Thr26Ile
77 Ireland 27971 T 1945 1944
78 Ireland 27972 C T 1945 1786 Gln27*
79 Ireland 27973 A 1945 1945
80 Ireland 27974 A 1945 1945
81 Ireland 27975 C 1945 1945
82 Ireland 27976 A T 1945 1944 His28Leu
83 Ireland 27977 T 1945 1945
84 Ireland 27978 C 1945 1945
85 Ireland 27979 A 1945 1945
86 Ireland 27980 A 1945 1945
87 Ireland 27981 C 1945 1945
88 Ireland 27982 C 1945 1945
89 Ireland 27983 A 1945 1945
90 Ireland 27984 T 1945 1945
91 Ireland 27985 A 1945 1945
92 Ireland 27986 T 1945 1945
93 Ireland 27987 G T 1945 1940 Val32Leu
94 Ireland 27988 T 1945 1945
95 Ireland 27989 A 1945 1944
96 Ireland 27990 G 1945 1945
97 Ireland 27991 T 1945 1945
98 Ireland 27992 T 1945 1945
99 Ireland 27993 G 1945 1945
100 Ireland 27994 A 1945 1945
101 Ireland 27995 T 1945 1945
102 Ireland 27996 G 1945 1945
103 Ireland 27997 A 1945 1945
104 Ireland 27998 C A 1945 1943 Asp35Glu
105 Ireland 27999 C 1945 1944
106 Ireland 28000 C 1945 1945
107 Ireland 28001 G T 1945 1941 Pro36Pro
108 Ireland 28002 T 1945 1945
109 Ireland 28003 G 1945 1945
110 Ireland 28004 T 1945 1945
111 Ireland 28005 C 1945 1945
112 Ireland 28006 C 1945 1945
113 Ireland 28007 T 1945 1945
114 Ireland 28008 A 1945 1945
115 Ireland 28009 T 1945 1945
116 Ireland 28010 T C 1945 1941 Ile39Ile
117 Ireland 28011 C T 1945 1918 His40Tyr
118 Ireland 28012 A 1945 1945
119 Ireland 28013 C 1945 1945
120 Ireland 28014 T 1945 1945
121 Ireland 28015 T 1945 1945
122 Ireland 28016 C 1945 1945
123 Ireland 28017 T 1945 1945
124 Ireland 28018 A 1945 1945
125 Ireland 28019 T 1945 1945
126 Ireland 28020 T C 1945 1944 Ser43Pro
127 Ireland 28021 C 1945 1945
128 Ireland 28022 T 1945 1945
129 Ireland 28023 A 1945 1945
130 Ireland 28024 A 1945 1945
131 Ireland 28025 A 1945 1945
132 Ireland 28026 T 1945 1945
133 Ireland 28027 G T 1945 1944 Trp45Leu
134 Ireland 28028 G 1945 1945
135 Ireland 28029 T 1945 1945
136 Ireland 28030 A 1945 1945
137 Ireland 28031 T 1945 1944
138 Ireland 28032 A 1945 1944
139 Ireland 28033 T 1945 1945
140 Ireland 28034 T 1945 1945
141 Ireland 28035 A 1945 1945
142 Ireland 28036 G 1945 1945
143 Ireland 28037 A 1945 1945
144 Ireland 28038 G 1945 1945
145 Ireland 28039 T 1945 1944
146 Ireland 28040 A 1945 1944
147 Ireland 28041 G 1945 1945
148 Ireland 28042 G 1945 1945
149 Ireland 28043 A 1945 1945
150 Ireland 28044 G 1945 1945
151 Ireland 28045 C T 1945 1944 Ala51Val
152 Ireland 28046 T 1945 1945
153 Ireland 28047 A 1945 1945
154 Ireland 28048 G T 1945 1783 Arg52Ile
155 Ireland 28049 A 1945 1945
156 Ireland 28050 A 1945 1945
157 Ireland 28051 A 1945 1945
158 Ireland 28052 A 1945 1945
159 Ireland 28053 T 1945 1944
160 Ireland 28054 C 1945 1944
161 Ireland 28055 A 1945 1944
162 Ireland 28056 G 1945 1944
163 Ireland 28057 C 1945 1944
164 Ireland 28058 A 1946 1946
165 Ireland 28059 C 1946 1946
166 Ireland 28060 C 1946 1946
167 Ireland 28061 T 1946 1946
168 Ireland 28062 T 1946 1946
169 Ireland 28063 T 1946 1946
170 Ireland 28064 A 1946 1946
171 Ireland 28065 A 1946 1946
172 Ireland 28066 T 1946 1946
173 Ireland 28067 T 1946 1946
174 Ireland 28068 G 1946 1946
175 Ireland 28069 A 1946 1946
176 Ireland 28070 A 1947 1946
177 Ireland 28071 T 1947 1946
178 Ireland 28072 T 1947 1946
179 Ireland 28073 G T 1947 1945 Leu60Phe
180 Ireland 28074 T 1947 1946
181 Ireland 28075 G 1947 1946
182 Ireland 28076 C T 1947 1945 Cys61Cys
183 Ireland 28077 G 1947 1947
184 Ireland 28078 T 1947 1947
185 Ireland 28079 G 1947 1946
186 Ireland 28080 G T 1947 1945 Asp63Tyr
187 Ireland 28081 A 1949 1949
188 Ireland 28082 T 1949 1949
189 Ireland 28083 G T 1949 1944 Glu64*
190 Ireland 28084 A 1949 1949
191 Ireland 28085 G 1949 1949
192 Ireland 28086 G 1949 1949
193 Ireland 28087 C T 1949 1945 Ala65Val
194 Ireland 28088 T 1950 1950
195 Ireland 28089 G 1950 1950
196 Ireland 28090 G 1950 1950
197 Ireland 28091 T 1950 1950
198 Ireland 28092 T 1950 1950
199 Ireland 28093 C T 1950 1949 Ser67Phe
200 Ireland 28094 T 1950 1950
201 Ireland 28095 A T 1950 1942 Lys68*
202 Ireland 28096 A 1950 1950
203 Ireland 28097 A 1950 1950
204 Ireland 28098 T C,G 1950 1945 Ser69Pro-p.Ser69Ala
205 Ireland 28099 C 1950 1950
206 Ireland 28100 A 1950 1950
207 Ireland 28101 C 1950 1949
208 Ireland 28102 C 1950 1949
209 Ireland 28103 C 1950 1949
210 Ireland 28104 A 1950 1949
211 Ireland 28105 T 1958 1957
212 Ireland 28106 T 1958 1957
213 Ireland 28107 C 1958 1957
214 Ireland 28108 A T 1958 1956 Gln72Leu
215 Ireland 28109 G 1958 1957
216 Ireland 28110 T C 1958 1957 Tyr73His
217 Ireland 28111 A G 1958 1799 Tyr73Cys
218 Ireland 28112 C 1958 1958
219 Ireland 28113 A 1958 1958
220 Ireland 28114 T 1958 1958
221 Ireland 28115 C 1958 1958
222 Ireland 28116 G 1958 1958
223 Ireland 28117 A 1958 1958
224 Ireland 28118 T 1959 1959
225 Ireland 28119 A 1959 1959
226 Ireland 28120 T 1959 1959
227 Ireland 28121 C 1960 1960
228 Ireland 28122 G A 1960 1958 Gly77Ser
229 Ireland 28123 G 1960 1959
230 Ireland 28124 T 1960 1959
231 Ireland 28125 A 1960 1959
232 Ireland 28126 A 1960 1959
233 Ireland 28127 T 1960 1960
234 Ireland 28128 T 1960 1959
235 Ireland 28129 A 1960 1959
236 Ireland 28130 T 1960 1959
237 Ireland 28131 A 1960 1959
238 Ireland 28132 C 1960 1959
239 Ireland 28133 A T 1960 1959 Thr80Thr
240 Ireland 28134 G 1960 1960
241 Ireland 28135 T 1960 1960
242 Ireland 28136 T 1960 1960
243 Ireland 28137 T 1960 1960
244 Ireland 28138 C 1960 1960
245 Ireland 28139 C 1960 1960
246 Ireland 28140 T 1960 1960
247 Ireland 28141 G 1960 1960
248 Ireland 28142 T 1960 1960
249 Ireland 28143 T 1960 1960
250 Ireland 28144 T C 1960 1946 Leu84Ser
251 Ireland 28145 A 1960 1960
252 Ireland 28146 C 1960 1960
253 Ireland 28147 C 1960 1960
254 Ireland 28148 T 1960 1960
255 Ireland 28149 T 1960 1960
256 Ireland 28150 T 1960 1960
257 Ireland 28151 T 1960 1960
258 Ireland 28152 A 1960 1960
259 Ireland 28153 C T 1960 1959 Thr87Ile
260 Ireland 28154 A 1960 1960
261 Ireland 28155 A 1960 1960
262 Ireland 28156 T 1960 1960
263 Ireland 28157 T 1960 1960
264 Ireland 28158 A 1960 1960
265 Ireland 28159 A 1960 1960
266 Ireland 28160 T 1960 1960
267 Ireland 28161 T 1960 1960
268 Ireland 28162 G 1960 1960
269 Ireland 28163 C T 1960 1959 Cys90Cys
270 Ireland 28164 C 1960 1960
271 Ireland 28165 A 1960 1960
272 Ireland 28166 G 1960 1960
273 Ireland 28167 G 1960 1960
274 Ireland 28168 A 1960 1960
275 Ireland 28169 A G 1960 1959 Glu92Glu
276 Ireland 28170 C 1960 1960
277 Ireland 28171 C 1960 1960
278 Ireland 28172 T 1960 1960
279 Ireland 28173 A 1964 1964
280 Ireland 28174 A 1964 1964
281 Ireland 28175 A 1964 1964
282 Ireland 28176 T 1964 1964
283 Ireland 28177 T C 1964 1952 Leu95Ser
284 Ireland 28178 G T 1964 1963 Leu95Phe
285 Ireland 28179 G 1964 1964
286 Ireland 28180 G 1964 1964
287 Ireland 28181 T 1964 1964
288 Ireland 28182 A 1964 1964
289 Ireland 28183 G 1964 1964
290 Ireland 28184 T 1964 1964
291 Ireland 28185 C 1964 1964
292 Ireland 28186 T 1964 1964
293 Ireland 28187 T 1964 1964
294 Ireland 28188 G 1964 1964
295 Ireland 28189 T 1964 1964
296 Ireland 28190 A 1964 1964
297 Ireland 28191 G 1964 1964
298 Ireland 28192 T 1964 1964
299 Ireland 28193 G 1964 1964
300 Ireland 28194 C 1964 1964
301 Ireland 28195 G 1964 1964
302 Ireland 28196 T 1964 1964
303 Ireland 28197 T 1964 1964
304 Ireland 28198 G 1964 1964
305 Ireland 28199 T 1964 1964
306 Ireland 28200 T 1964 1964
307 Ireland 28201 C 1964 1964
308 Ireland 28202 G A 1964 1963 Ser103Ser
309 Ireland 28203 T 1964 1964
310 Ireland 28204 T 1964 1964
311 Ireland 28205 C 1964 1964
312 Ireland 28206 T 1964 1964
313 Ireland 28207 A 1964 1964
314 Ireland 28208 T 1964 1964
315 Ireland 28209 G 1964 1964
316 Ireland 28210 A 1964 1964
317 Ireland 28211 A 1964 1964
318 Ireland 28212 G 1964 1964
319 Ireland 28213 A 1964 1964
320 Ireland 28214 C 1964 1962
321 Ireland 28215 T 1964 1964
322 Ireland 28216 T 1964 1964
323 Ireland 28217 T 1964 1964
324 Ireland 28218 T 1964 1964
325 Ireland 28219 T 1964 1964
326 Ireland 28220 A 1964 1964
327 Ireland 28221 G 1964 1964
328 Ireland 28222 A 1964 1964
329 Ireland 28223 G 1964 1964
330 Ireland 28224 T 1964 1964
331 Ireland 28225 A 1964 1964
332 Ireland 28226 T 1964 1964
333 Ireland 28227 C 1964 1964
334 Ireland 28228 A 1964 1964
335 Ireland 28229 T 1964 1964
336 Ireland 28230 G 1964 1964
337 Ireland 28231 A 1964 1964
338 Ireland 28232 C 1964 1964
339 Ireland 28233 G 1964 1964
340 Ireland 28234 T 1964 1963
341 Ireland 28235 T 1964 1964
342 Ireland 28236 C 1964 1964
343 Ireland 28237 G 1964 1964
344 Ireland 28238 T 1964 1964
345 Ireland 28239 G 1964 1964
346 Ireland 28240 T 1964 1964
347 Ireland 28241 T 1964 1964
348 Ireland 28242 G 1964 1964
349 Ireland 28243 T 1964 1964
350 Ireland 28244 T 1964 1964
351 Ireland 28245 T 1964 1964
352 Ireland 28246 T 1964 1964
353 Ireland 28247 A 1964 1964
354 Ireland 28248 G T 1964 1959 Asp119Tyr
355 Ireland 28249 A 1964 1964
356 Ireland 28250 T 1964 1964
357 Ireland 28251 T 1964 1964
358 Ireland 28252 T 1964 1964
359 Ireland 28253 C T 1964 1943 Phe120Phe
360 Ireland 28254 A 1964 1964
361 Ireland 28255 T C 1964 1963 Ile121Thr
362 Ireland 28256 C 1964 1964
363 Ireland 28257 T 1964 1964
364 Ireland 28258 A 1964 1964
365 Ireland 28259 A 1964 1964