National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                               1        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 27894 A 32 32
1 Iraq 27895 T 32 32
2 Iraq 27896 G 32 32
3 Iraq 27897 A 32 32
4 Iraq 27898 A 32 32
5 Iraq 27899 A 32 32
6 Iraq 27900 T 32 32
7 Iraq 27901 T 32 32
8 Iraq 27902 T 32 32
9 Iraq 27903 C 32 32
10 Iraq 27904 T 32 32
11 Iraq 27905 T 32 32
12 Iraq 27906 G 32 32
13 Iraq 27907 T 32 32
14 Iraq 27908 T 32 32
15 Iraq 27909 T 32 32
16 Iraq 27910 T 32 32
17 Iraq 27911 C 32 32
18 Iraq 27912 T 32 32
19 Iraq 27913 T 32 32
20 Iraq 27914 A 32 31
21 Iraq 27915 G 32 32
22 Iraq 27916 G 32 32
23 Iraq 27917 A 32 32
24 Iraq 27918 A 32 32
25 Iraq 27919 T 32 32
26 Iraq 27920 C 32 32
27 Iraq 27921 A 32 32
28 Iraq 27922 T 32 32
29 Iraq 27923 C 32 32
30 Iraq 27924 A 32 32
31 Iraq 27925 C 32 32
32 Iraq 27926 A 32 32
33 Iraq 27927 A 32 32
34 Iraq 27928 C 32 32
35 Iraq 27929 T 32 32
36 Iraq 27930 G 32 32
37 Iraq 27931 T 32 32
38 Iraq 27932 A 32 32
39 Iraq 27933 G 32 32
40 Iraq 27934 C 32 32
41 Iraq 27935 T 32 32
42 Iraq 27936 G 32 32
43 Iraq 27937 C 32 32
44 Iraq 27938 A 32 32
45 Iraq 27939 T 32 32
46 Iraq 27940 T 32 32
47 Iraq 27941 T 32 32
48 Iraq 27942 C 32 32
49 Iraq 27943 A 32 32
50 Iraq 27944 C 32 32
51 Iraq 27945 C 32 32
52 Iraq 27946 A 32 32
53 Iraq 27947 A 32 32
54 Iraq 27948 G 32 32
55 Iraq 27949 A 32 32
56 Iraq 27950 A 32 32
57 Iraq 27951 T 32 32
58 Iraq 27952 G 32 32
59 Iraq 27953 T 32 32
60 Iraq 27954 A 32 32
61 Iraq 27955 G 32 32
62 Iraq 27956 T 32 32
63 Iraq 27957 T 32 32
64 Iraq 27958 T 32 32
65 Iraq 27959 A 32 32
66 Iraq 27960 C 32 32
67 Iraq 27961 A 32 32
68 Iraq 27962 G 32 32
69 Iraq 27963 T 32 32
70 Iraq 27964 C 32 32
71 Iraq 27965 A 32 32
72 Iraq 27966 T 32 32
73 Iraq 27967 G 32 32
74 Iraq 27968 T 32 32
75 Iraq 27969 A 32 32
76 Iraq 27970 C 32 32
77 Iraq 27971 T 32 32
78 Iraq 27972 C 32 32
79 Iraq 27973 A 32 32
80 Iraq 27974 A 32 32
81 Iraq 27975 C 32 32
82 Iraq 27976 A 32 32
83 Iraq 27977 T 32 32
84 Iraq 27978 C 32 32
85 Iraq 27979 A 32 32
86 Iraq 27980 A 32 32
87 Iraq 27981 C 32 32
88 Iraq 27982 C 32 32
89 Iraq 27983 A 32 32
90 Iraq 27984 T 32 32
91 Iraq 27985 A 32 32
92 Iraq 27986 T 32 32
93 Iraq 27987 G 32 32
94 Iraq 27988 T 32 32
95 Iraq 27989 A 32 32
96 Iraq 27990 G 32 32
97 Iraq 27991 T 32 32
98 Iraq 27992 T 32 32
99 Iraq 27993 G 32 32
100 Iraq 27994 A 32 32
101 Iraq 27995 T 32 32
102 Iraq 27996 G 32 32
103 Iraq 27997 A 32 32
104 Iraq 27998 C 32 32
105 Iraq 27999 C 32 32
106 Iraq 28000 C 32 32
107 Iraq 28001 G 32 32
108 Iraq 28002 T 32 32
109 Iraq 28003 G 32 32
110 Iraq 28004 T 32 32
111 Iraq 28005 C 32 32
112 Iraq 28006 C 32 32
113 Iraq 28007 T 32 32
114 Iraq 28008 A 32 32
115 Iraq 28009 T 32 32
116 Iraq 28010 T 32 32
117 Iraq 28011 C 32 32
118 Iraq 28012 A 32 32
119 Iraq 28013 C 32 32
120 Iraq 28014 T 32 32
121 Iraq 28015 T 32 32
122 Iraq 28016 C 32 32
123 Iraq 28017 T 32 32
124 Iraq 28018 A 32 32
125 Iraq 28019 T 32 32
126 Iraq 28020 T 32 32
127 Iraq 28021 C 32 32
128 Iraq 28022 T 32 32
129 Iraq 28023 A 32 32
130 Iraq 28024 A 32 32
131 Iraq 28025 A 32 32
132 Iraq 28026 T 32 32
133 Iraq 28027 G 32 32
134 Iraq 28028 G 32 32
135 Iraq 28029 T 32 32
136 Iraq 28030 A 32 32
137 Iraq 28031 T 32 32
138 Iraq 28032 A 32 32
139 Iraq 28033 T 32 32
140 Iraq 28034 T 32 32
141 Iraq 28035 A 32 32
142 Iraq 28036 G 32 32
143 Iraq 28037 A 32 32
144 Iraq 28038 G 32 32
145 Iraq 28039 T 32 32
146 Iraq 28040 A 32 32
147 Iraq 28041 G 32 32
148 Iraq 28042 G 32 32
149 Iraq 28043 A 32 32
150 Iraq 28044 G 32 32
151 Iraq 28045 C 32 32
152 Iraq 28046 T 32 32
153 Iraq 28047 A 32 32
154 Iraq 28048 G 32 32
155 Iraq 28049 A 32 32
156 Iraq 28050 A 32 32
157 Iraq 28051 A 32 32
158 Iraq 28052 A 32 32
159 Iraq 28053 T 32 32
160 Iraq 28054 C 32 32
161 Iraq 28055 A 32 32
162 Iraq 28056 G 32 32
163 Iraq 28057 C 32 32
164 Iraq 28058 A 32 32
165 Iraq 28059 C 32 32
166 Iraq 28060 C 32 32
167 Iraq 28061 T 32 32
168 Iraq 28062 T 32 32
169 Iraq 28063 T 32 32
170 Iraq 28064 A 32 32
171 Iraq 28065 A 32 32
172 Iraq 28066 T 32 32
173 Iraq 28067 T 32 32
174 Iraq 28068 G 32 32
175 Iraq 28069 A 32 32
176 Iraq 28070 A 32 32
177 Iraq 28071 T 32 32
178 Iraq 28072 T 32 32
179 Iraq 28073 G 32 32
180 Iraq 28074 T 32 32
181 Iraq 28075 G 32 32
182 Iraq 28076 C 32 32
183 Iraq 28077 G 32 32
184 Iraq 28078 T 32 32
185 Iraq 28079 G 32 32
186 Iraq 28080 G 32 32
187 Iraq 28081 A 32 32
188 Iraq 28082 T 32 32
189 Iraq 28083 G 32 32
190 Iraq 28084 A 32 32
191 Iraq 28085 G 32 32
192 Iraq 28086 G 32 32
193 Iraq 28087 C 32 32
194 Iraq 28088 T 32 32
195 Iraq 28089 G 32 32
196 Iraq 28090 G 32 32
197 Iraq 28091 T 32 32
198 Iraq 28092 T 32 32
199 Iraq 28093 C 32 32
200 Iraq 28094 T 32 32
201 Iraq 28095 A 32 32
202 Iraq 28096 A 32 32
203 Iraq 28097 A 32 32
204 Iraq 28098 T 32 32
205 Iraq 28099 C 32 32
206 Iraq 28100 A 32 32
207 Iraq 28101 C 32 32
208 Iraq 28102 C 32 32
209 Iraq 28103 C 32 32
210 Iraq 28104 A 32 32
211 Iraq 28105 T 32 32
212 Iraq 28106 T 32 32
213 Iraq 28107 C 32 32
214 Iraq 28108 A 32 32
215 Iraq 28109 G 32 32
216 Iraq 28110 T 32 32
217 Iraq 28111 A 32 32
218 Iraq 28112 C 32 32
219 Iraq 28113 A 32 32
220 Iraq 28114 T 32 32
221 Iraq 28115 C 32 32
222 Iraq 28116 G 32 32
223 Iraq 28117 A 32 32
224 Iraq 28118 T 32 32
225 Iraq 28119 A 32 32
226 Iraq 28120 T 32 32
227 Iraq 28121 C 32 32
228 Iraq 28122 G 32 32
229 Iraq 28123 G 32 32
230 Iraq 28124 T 32 32
231 Iraq 28125 A 32 32
232 Iraq 28126 A 32 32
233 Iraq 28127 T 32 32
234 Iraq 28128 T 32 32
235 Iraq 28129 A 32 32
236 Iraq 28130 T 32 32
237 Iraq 28131 A 32 32
238 Iraq 28132 C 32 32
239 Iraq 28133 A 32 32
240 Iraq 28134 G 32 32
241 Iraq 28135 T 32 32
242 Iraq 28136 T 32 32
243 Iraq 28137 T 32 32
244 Iraq 28138 C 32 32
245 Iraq 28139 C 32 32
246 Iraq 28140 T 32 32
247 Iraq 28141 G 32 32
248 Iraq 28142 T 32 32
249 Iraq 28143 T 32 32
250 Iraq 28144 T 32 32
251 Iraq 28145 A 32 32
252 Iraq 28146 C 32 32
253 Iraq 28147 C 32 32
254 Iraq 28148 T 32 32
255 Iraq 28149 T 32 32
256 Iraq 28150 T 32 32
257 Iraq 28151 T 32 32
258 Iraq 28152 A 32 32
259 Iraq 28153 C 32 32
260 Iraq 28154 A 32 32
261 Iraq 28155 A 32 32
262 Iraq 28156 T 32 32
263 Iraq 28157 T 32 32
264 Iraq 28158 A 32 32
265 Iraq 28159 A 32 32
266 Iraq 28160 T 32 32
267 Iraq 28161 T 32 32
268 Iraq 28162 G 32 32
269 Iraq 28163 C 32 32
270 Iraq 28164 C 32 32
271 Iraq 28165 A 32 32
272 Iraq 28166 G 32 32
273 Iraq 28167 G 32 32
274 Iraq 28168 A 32 32
275 Iraq 28169 A 32 32
276 Iraq 28170 C 32 32
277 Iraq 28171 C 32 32
278 Iraq 28172 T 32 32
279 Iraq 28173 A 32 32
280 Iraq 28174 A 32 32
281 Iraq 28175 A 32 32
282 Iraq 28176 T 32 32
283 Iraq 28177 T 32 32
284 Iraq 28178 G 32 32
285 Iraq 28179 G 32 32
286 Iraq 28180 G 32 32
287 Iraq 28181 T 32 32
288 Iraq 28182 A 32 32
289 Iraq 28183 G 32 32
290 Iraq 28184 T 32 32
291 Iraq 28185 C 32 32
292 Iraq 28186 T 32 32
293 Iraq 28187 T 32 32
294 Iraq 28188 G 32 32
295 Iraq 28189 T 32 32
296 Iraq 28190 A 32 32
297 Iraq 28191 G 32 32
298 Iraq 28192 T 32 32
299 Iraq 28193 G 32 32
300 Iraq 28194 C 32 32
301 Iraq 28195 G 32 32
302 Iraq 28196 T 32 32
303 Iraq 28197 T 32 32
304 Iraq 28198 G 32 32
305 Iraq 28199 T 32 32
306 Iraq 28200 T 32 32
307 Iraq 28201 C 32 32
308 Iraq 28202 G 32 32
309 Iraq 28203 T 32 32
310 Iraq 28204 T 32 32
311 Iraq 28205 C 32 32
312 Iraq 28206 T 32 32
313 Iraq 28207 A 32 32
314 Iraq 28208 T 32 32
315 Iraq 28209 G 32 32
316 Iraq 28210 A 32 32
317 Iraq 28211 A 32 32
318 Iraq 28212 G 32 32
319 Iraq 28213 A 32 32
320 Iraq 28214 C 32 32
321 Iraq 28215 T 32 32
322 Iraq 28216 T 32 32
323 Iraq 28217 T 32 32
324 Iraq 28218 T 32 32
325 Iraq 28219 T 32 32
326 Iraq 28220 A 32 32
327 Iraq 28221 G 32 32
328 Iraq 28222 A 32 32
329 Iraq 28223 G 32 32
330 Iraq 28224 T 32 32
331 Iraq 28225 A 32 32
332 Iraq 28226 T 32 32
333 Iraq 28227 C 32 32
334 Iraq 28228 A 32 32
335 Iraq 28229 T 32 32
336 Iraq 28230 G 32 32
337 Iraq 28231 A 32 32
338 Iraq 28232 C 32 32
339 Iraq 28233 G 32 32
340 Iraq 28234 T 32 32
341 Iraq 28235 T 32 32
342 Iraq 28236 C 32 32
343 Iraq 28237 G 32 32
344 Iraq 28238 T 32 32
345 Iraq 28239 G 32 32
346 Iraq 28240 T 32 32
347 Iraq 28241 T 32 32
348 Iraq 28242 G 32 32
349 Iraq 28243 T 32 32
350 Iraq 28244 T 32 32
351 Iraq 28245 T 32 32
352 Iraq 28246 T 32 32
353 Iraq 28247 A 32 32
354 Iraq 28248 G 32 32
355 Iraq 28249 A 32 32
356 Iraq 28250 T 32 32
357 Iraq 28251 T 32 32
358 Iraq 28252 T C 32 31 Phe120Ser
359 Iraq 28253 C 32 32
360 Iraq 28254 A 32 32
361 Iraq 28255 T 32 32
362 Iraq 28256 C 32 32
363 Iraq 28257 T 32 32
364 Iraq 28258 A 32 32
365 Iraq 28259 A 32 32