National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               2   2    
C     21   1     1                              
D     22           1                            
E 3   18     1                             1    
F     24         1         1                    
G 1   15       1                           1    
H     12             1                          
I     30               2   1             1      
K     15               1                        
L     30                               1        
M     3                                        
N     6                                        
P     21                   1     1     1        
Q     18                 1                      
R     12               1                        
S     27         1         1           1        
T     15               1       1                
V     36 1                 3                    
W     3   1                                    
Y     21                       1                

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 27894 A 1821 1821
1 India 27895 T 1821 1821
2 India 27896 G 1821 1820
3 India 27897 A 1821 1819
4 India 27898 A 1821 1821
5 India 27899 A 1821 1820
6 India 27900 T 1821 1821
7 India 27901 T 1821 1821
8 India 27902 T 1821 1821
9 India 27903 C 1821 1821
10 India 27904 T 1821 1821
11 India 27905 T 1821 1821
12 India 27906 G 1821 1821
13 India 27907 T 1821 1821
14 India 27908 T 1821 1821
15 India 27909 T 1821 1821
16 India 27910 T 1821 1820
17 India 27911 C 1821 1821
18 India 27912 T 1821 1821
19 India 27913 T 1821 1821
20 India 27914 A 1821 1821
21 India 27915 G T 1821 1819 Gly8*
22 India 27916 G T,A 1821 1819 Gly8Val-p.Gly8Glu
23 India 27917 A 1821 1821
24 India 27918 A 1821 1821
25 India 27919 T 1821 1821
26 India 27920 C 1821 1819
27 India 27921 A 1821 1821
28 India 27922 T 1821 1821
29 India 27923 C 1821 1821
30 India 27924 A 1821 1821
31 India 27925 C 1821 1820
32 India 27926 A 1821 1820
33 India 27927 A 1821 1820
34 India 27928 C A 1821 1820 Thr12Asn
35 India 27929 T 1821 1821
36 India 27930 G 1821 1821
37 India 27931 T 1821 1821
38 India 27932 A 1821 1821
39 India 27933 G T 1821 1820 Ala14Ser
40 India 27934 C 1821 1821
41 India 27935 T 1821 1821
42 India 27936 G 1821 1819
43 India 27937 C 1821 1819
44 India 27938 A 1821 1819
45 India 27939 T 1821 1819
46 India 27940 T 1821 1819
47 India 27941 T 1821 1821
48 India 27942 C 1821 1821
49 India 27943 A 1821 1819
50 India 27944 C T 1821 1820 His17His
51 India 27945 C A 1823 1822 Gln18Lys
52 India 27946 A 1823 1823
53 India 27947 A 1823 1821
54 India 27948 G 1823 1823
55 India 27949 A 1823 1821
56 India 27950 A 1823 1823
57 India 27951 T 1823 1823
58 India 27952 G 1823 1823
59 India 27953 T 1823 1823
60 India 27954 A 1823 1823
61 India 27955 G 1823 1823
62 India 27956 T 1823 1823
63 India 27957 T 1823 1823
64 India 27958 T 1823 1823
65 India 27959 A 1824 1824
66 India 27960 C 1824 1824
67 India 27961 A 1824 1823
68 India 27962 G 1824 1824
69 India 27963 T 1824 1824
70 India 27964 C 1824 1824
71 India 27965 A 1824 1824
72 India 27966 T 1824 1824
73 India 27967 G 1824 1824
74 India 27968 T 1824 1824
75 India 27969 A 1824 1823
76 India 27970 C 1825 1825
77 India 27971 T 1825 1825
78 India 27972 C 1825 1825
79 India 27973 A 1826 1826
80 India 27974 A 1826 1826
81 India 27975 C 1826 1826
82 India 27976 A 1826 1826
83 India 27977 T 1826 1826
84 India 27978 C 1826 1826
85 India 27979 A 1826 1826
86 India 27980 A 1826 1826
87 India 27981 C 1826 1826
88 India 27982 C 1826 1826
89 India 27983 A 1826 1826
90 India 27984 T 1826 1826
91 India 27985 A 1826 1826
92 India 27986 T 1826 1826
93 India 27987 G T 1826 1825 Val32Leu
94 India 27988 T 1826 1825
95 India 27989 A 1826 1826
96 India 27990 G 1826 1826
97 India 27991 T 1826 1826
98 India 27992 T 1826 1826
99 India 27993 G 1826 1826
100 India 27994 A 1827 1826
101 India 27995 T 1827 1827
102 India 27996 G 1827 1827
103 India 27997 A 1827 1826
104 India 27998 C 1827 1827
105 India 27999 C T 1827 1826 Pro36Ser
106 India 28000 C 1827 1827
107 India 28001 G T 1827 1821 Pro36Pro
108 India 28002 T 1827 1827
109 India 28003 G 1827 1827
110 India 28004 T 1827 1827
111 India 28005 C 1827 1826
112 India 28006 C 1827 1827
113 India 28007 T 1827 1826
114 India 28008 A 1827 1826
115 India 28009 T 1827 1826
116 India 28010 T 1827 1826
117 India 28011 C 1827 1824
118 India 28012 A 1827 1826
119 India 28013 C 1827 1826
120 India 28014 T 1827 1826
121 India 28015 T 1827 1826
122 India 28016 C 1827 1825
123 India 28017 T 1827 1826
124 India 28018 A 1827 1825
125 India 28019 T 1827 1825
126 India 28020 T 1827 1825
127 India 28021 C 1827 1825
128 India 28022 T 1827 1825
129 India 28023 A 1827 1823
130 India 28024 A 1827 1825
131 India 28025 A 1827 1826
132 India 28026 T 1827 1826
133 India 28027 G 1827 1826
134 India 28028 G C 1827 1825 Trp45Cys
135 India 28029 T 1827 1826
136 India 28030 A 1827 1826
137 India 28031 T 1827 1826
138 India 28032 A 1827 1826
139 India 28033 T 1827 1826
140 India 28034 T 1827 1826
141 India 28035 A 1828 1827
142 India 28036 G 1828 1827
143 India 28037 A 1828 1824
144 India 28038 G 1828 1826
145 India 28039 T 1828 1826
146 India 28040 A 1828 1826
147 India 28041 G 1828 1826
148 India 28042 G 1828 1826
149 India 28043 A 1828 1826
150 India 28044 G 1828 1825
151 India 28045 C T 1828 1824 Ala51Val
152 India 28046 T 1828 1825
153 India 28047 A 1828 1825
154 India 28048 G T 1828 1822 Arg52Ile
155 India 28049 A 1828 1825
156 India 28050 A 1828 1825
157 India 28051 A 1828 1825
158 India 28052 A 1828 1825
159 India 28053 T 1828 1825
160 India 28054 C T 1828 1822 Ser54Leu
161 India 28055 A 1828 1825
162 India 28056 G 1829 1825
163 India 28057 C 1829 1825
164 India 28058 A 1828 1823
165 India 28059 C 1828 1822
166 India 28060 C 1828 1822
167 India 28061 T 1827 1821
168 India 28062 T 1827 1821
169 India 28063 T 1827 1821
170 India 28064 A 1827 1821
171 India 28065 A 1827 1822
172 India 28066 T 1827 1822
173 India 28067 T 1828 1823
174 India 28068 G 1828 1824
175 India 28069 A 1828 1824
176 India 28070 A 1828 1823
177 India 28071 T 1828 1822
178 India 28072 T 1828 1821
179 India 28073 G 1828 1821
180 India 28074 T 1828 1820
181 India 28075 G 1828 1823
182 India 28076 C 1829 1824
183 India 28077 G T 1829 1816 Val62Leu
184 India 28078 T C 1829 1822 Val62Ala
185 India 28079 G 1830 1824
186 India 28080 G 1830 1824
187 India 28081 A 1830 1824
188 India 28082 T 1839 1836
189 India 28083 G T 1840 1831 Glu64*
190 India 28084 A T 1840 1836 Glu64Val
191 India 28085 G T 1853 1852 Glu64Asp
192 India 28086 G T 1867 1866 Ala65Ser
193 India 28087 C T 1869 1864 Ala65Val
194 India 28088 T 1869 1869
195 India 28089 G 1870 1869
196 India 28090 G 1870 1870
197 India 28091 T 1870 1870
198 India 28092 T 1870 1870
199 India 28093 C T 1870 1869 Ser67Phe
200 India 28094 T 1870 1870
201 India 28095 A 1870 1869
202 India 28096 A 1870 1870
203 India 28097 A 1870 1870
204 India 28098 T 1870 1870
205 India 28099 C 1870 1870
206 India 28100 A 1870 1869
207 India 28101 C 1870 1869
208 India 28102 C 1870 1869
209 India 28103 C 1870 1869
210 India 28104 A 1870 1869
211 India 28105 T C 1871 1869 Ile71Thr
212 India 28106 T 1871 1869
213 India 28107 C 1871 1869
214 India 28108 A 1871 1869
215 India 28109 G 1869 1867
216 India 28110 T A 1869 1867 Tyr73Asn
217 India 28111 A 1869 1868
218 India 28112 C 1869 1868
219 India 28113 A 1869 1868
220 India 28114 T 1869 1868
221 India 28115 C T 1869 1866 Ile74Ile
222 India 28116 G 1869 1868
223 India 28117 A 1869 1868
224 India 28118 T 1869 1868
225 India 28119 A 1869 1868
226 India 28120 T 1869 1868
227 India 28121 C 1869 1869
228 India 28122 G 1870 1870
229 India 28123 G 1870 1870
230 India 28124 T 1870 1870
231 India 28125 A 1870 1870
232 India 28126 A 1870 1870
233 India 28127 T 1870 1870
234 India 28128 T 1870 1870
235 India 28129 A 1870 1870
236 India 28130 T 1870 1870
237 India 28131 A 1870 1870
238 India 28132 C 1870 1870
239 India 28133 A 1870 1870
240 India 28134 G 1870 1870
241 India 28135 T 1870 1870
242 India 28136 T 1870 1870
243 India 28137 T 1870 1870
244 India 28138 C 1870 1870
245 India 28139 C T 1870 1867 Ser82Ser
246 India 28140 T 1870 1870
247 India 28141 G 1870 1870
248 India 28142 T 1870 1870
249 India 28143 T 1870 1870
250 India 28144 T C 1870 1788 Leu84Ser
251 India 28145 A 1870 1870
252 India 28146 C 1870 1870
253 India 28147 C T 1870 1869 Pro85Leu
254 India 28148 T 1869 1869
255 India 28149 T 1869 1869
256 India 28150 T 1869 1869
257 India 28151 T 1868 1867
258 India 28152 A 1868 1867
259 India 28153 C T 1868 1866 Thr87Ile
260 India 28154 A 1868 1867
261 India 28155 A 1868 1867
262 India 28156 T 1868 1867
263 India 28157 T 1868 1867
264 India 28158 A 1868 1867
265 India 28159 A 1868 1867
266 India 28160 T 1868 1867
267 India 28161 T 1868 1867
268 India 28162 G 1868 1867
269 India 28163 C T 1868 1866 Cys90Cys
270 India 28164 C 1868 1867
271 India 28165 A 1868 1867
272 India 28166 G 1868 1867
273 India 28167 G 1868 1868
274 India 28168 A 1868 1868
275 India 28169 A 1868 1868
276 India 28170 C 1868 1868
277 India 28171 C 1868 1868
278 India 28172 T 1868 1867
279 India 28173 A 1867 1866
280 India 28174 A T 1866 1864 Lys94Ile
281 India 28175 A 1866 1865
282 India 28176 T 1866 1865
283 India 28177 T 1866 1866
284 India 28178 G 1866 1866
285 India 28179 G 1866 1866
286 India 28180 G 1866 1866
287 India 28181 T 1866 1866
288 India 28182 A 1866 1866
289 India 28183 G 1866 1866
290 India 28184 T 1866 1866
291 India 28185 C 1866 1866
292 India 28186 T 1866 1866
293 India 28187 T 1866 1866
294 India 28188 G C 1866 1865 Val99Leu
295 India 28189 T 1866 1866
296 India 28190 A 1866 1866
297 India 28191 G 1866 1866
298 India 28192 T 1866 1866
299 India 28193 G 1866 1866
300 India 28194 C 1866 1866
301 India 28195 G 1866 1866
302 India 28196 T 1866 1865
303 India 28197 T 1866 1865
304 India 28198 G T 1866 1863 Cys102Phe
305 India 28199 T 1866 1865
306 India 28200 T 1866 1864
307 India 28201 C 1866 1865
308 India 28202 G 1866 1865
309 India 28203 T 1866 1865
310 India 28204 T 1866 1865
311 India 28205 C 1866 1865
312 India 28206 T 1866 1865
313 India 28207 A 1866 1864
314 India 28208 T 1866 1864
315 India 28209 G T 1866 1863 Glu106*
316 India 28210 A 1866 1865
317 India 28211 A 1866 1865
318 India 28212 G 1866 1865
319 India 28213 A 1866 1865
320 India 28214 C 1866 1865
321 India 28215 T 1866 1865
322 India 28216 T 1865 1864
323 India 28217 T 1865 1864
324 India 28218 T 1865 1864
325 India 28219 T 1866 1865
326 India 28220 A 1866 1865
327 India 28221 G T 1866 1851 Glu110*
328 India 28222 A 1866 1865
329 India 28223 G 1866 1865
330 India 28224 T 1866 1865
331 India 28225 A 1866 1865
332 India 28226 T 1866 1866
333 India 28227 C 1866 1866
334 India 28228 A 1866 1866
335 India 28229 T 1866 1866
336 India 28230 G 1865 1865
337 India 28231 A 1865 1865
338 India 28232 C 1865 1865
339 India 28233 G 1865 1865
340 India 28234 T 1865 1865
341 India 28235 T 1865 1865
342 India 28236 C 1865 1864
343 India 28237 G 1865 1864
344 India 28238 T 1865 1864
345 India 28239 G 1865 1864
346 India 28240 T 1865 1864
347 India 28241 T 1865 1864
348 India 28242 G 1865 1864
349 India 28243 T 1863 1862
350 India 28244 T 1863 1863
351 India 28245 T 1860 1860
352 India 28246 T 1859 1859
353 India 28247 A 1858 1858
354 India 28248 G 1858 1858
355 India 28249 A G 1858 1857 Asp119Gly
356 India 28250 T 1858 1858
357 India 28251 T 1858 1858
358 India 28252 T 1858 1858
359 India 28253 C T,A 1858 1850 Phe120Leu-p.Phe120Phe
360 India 28254 A C 1858 1853 Ile121Leu
361 India 28255 T 1858 1858
362 India 28256 C T 1858 1857 Ile121Ile
363 India 28257 T 1858 1858
364 India 28258 A 1858 1858
365 India 28259 A 1858 1858