National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   1    
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K 1   15                 1                      
L     30                                        
M     3                                        
N     6                                        
P     21                         1              
Q 1   18                                        
R     12               1                        
S     27                                        
T     15                                        
V     36                                        
W     3                                        
Y     21   1         1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Hungary 27894 A 278 278
1 Hungary 27895 T 278 278
2 Hungary 27896 G 278 278
3 Hungary 27897 A 278 278
4 Hungary 27898 A 278 278
5 Hungary 27899 A 278 278
6 Hungary 27900 T 278 278
7 Hungary 27901 T 278 278
8 Hungary 27902 T 278 278
9 Hungary 27903 C 278 278
10 Hungary 27904 T 278 278
11 Hungary 27905 T 278 278
12 Hungary 27906 G 278 278
13 Hungary 27907 T 278 278
14 Hungary 27908 T 278 278
15 Hungary 27909 T 278 278
16 Hungary 27910 T 278 278
17 Hungary 27911 C 278 278
18 Hungary 27912 T 278 278
19 Hungary 27913 T 278 278
20 Hungary 27914 A 278 278
21 Hungary 27915 G 278 278
22 Hungary 27916 G 278 278
23 Hungary 27917 A 278 278
24 Hungary 27918 A 278 278
25 Hungary 27919 T 278 278
26 Hungary 27920 C 278 278
27 Hungary 27921 A 278 278
28 Hungary 27922 T 278 278
29 Hungary 27923 C 278 278
30 Hungary 27924 A 278 278
31 Hungary 27925 C 278 278
32 Hungary 27926 A 278 278
33 Hungary 27927 A 278 278
34 Hungary 27928 C 278 278
35 Hungary 27929 T 278 278
36 Hungary 27930 G 278 278
37 Hungary 27931 T 278 278
38 Hungary 27932 A 278 278
39 Hungary 27933 G 278 278
40 Hungary 27934 C 278 278
41 Hungary 27935 T 278 278
42 Hungary 27936 G 278 278
43 Hungary 27937 C 278 278
44 Hungary 27938 A 278 278
45 Hungary 27939 T 278 278
46 Hungary 27940 T 278 278
47 Hungary 27941 T 278 278
48 Hungary 27942 C 278 278
49 Hungary 27943 A 278 278
50 Hungary 27944 C 278 278
51 Hungary 27945 C 278 278
52 Hungary 27946 A 278 278
53 Hungary 27947 A 278 278
54 Hungary 27948 G 278 278
55 Hungary 27949 A 278 278
56 Hungary 27950 A 278 278
57 Hungary 27951 T 278 278
58 Hungary 27952 G 278 278
59 Hungary 27953 T 278 278
60 Hungary 27954 A 278 278
61 Hungary 27955 G 278 278
62 Hungary 27956 T 278 278
63 Hungary 27957 T 278 278
64 Hungary 27958 T 278 278
65 Hungary 27959 A 278 278
66 Hungary 27960 C 278 278
67 Hungary 27961 A 278 278
68 Hungary 27962 G 278 278
69 Hungary 27963 T 278 278
70 Hungary 27964 C 278 278
71 Hungary 27965 A 278 278
72 Hungary 27966 T 278 278
73 Hungary 27967 G 278 278
74 Hungary 27968 T 278 278
75 Hungary 27969 A 278 278
76 Hungary 27970 C 278 278
77 Hungary 27971 T 278 278
78 Hungary 27972 C T 278 273 Gln27*
79 Hungary 27973 A 278 278
80 Hungary 27974 A 278 278
81 Hungary 27975 C 278 278
82 Hungary 27976 A 278 278
83 Hungary 27977 T 278 278
84 Hungary 27978 C 278 278
85 Hungary 27979 A 278 278
86 Hungary 27980 A 278 278
87 Hungary 27981 C 278 278
88 Hungary 27982 C 278 278
89 Hungary 27983 A 278 278
90 Hungary 27984 T C 278 277 Tyr31His
91 Hungary 27985 A 278 278
92 Hungary 27986 T 278 278
93 Hungary 27987 G 278 278
94 Hungary 27988 T 278 278
95 Hungary 27989 A 278 278
96 Hungary 27990 G 278 278
97 Hungary 27991 T 278 278
98 Hungary 27992 T 278 278
99 Hungary 27993 G 278 278
100 Hungary 27994 A 278 278
101 Hungary 27995 T 278 278
102 Hungary 27996 G 278 278
103 Hungary 27997 A 278 278
104 Hungary 27998 C 278 278
105 Hungary 27999 C 278 278
106 Hungary 28000 C 278 278
107 Hungary 28001 G T 278 275 Pro36Pro
108 Hungary 28002 T 278 278
109 Hungary 28003 G 278 278
110 Hungary 28004 T 278 278
111 Hungary 28005 C 278 278
112 Hungary 28006 C 278 278
113 Hungary 28007 T 278 278
114 Hungary 28008 A 278 278
115 Hungary 28009 T 278 278
116 Hungary 28010 T 278 278
117 Hungary 28011 C 278 278
118 Hungary 28012 A 278 278
119 Hungary 28013 C 278 278
120 Hungary 28014 T 278 278
121 Hungary 28015 T 278 278
122 Hungary 28016 C 278 278
123 Hungary 28017 T 278 278
124 Hungary 28018 A 278 278
125 Hungary 28019 T 278 278
126 Hungary 28020 T 278 278
127 Hungary 28021 C 278 278
128 Hungary 28022 T 278 278
129 Hungary 28023 A 278 278
130 Hungary 28024 A 278 278
131 Hungary 28025 A G 278 277 Lys44Lys
132 Hungary 28026 T 278 278
133 Hungary 28027 G 278 278
134 Hungary 28028 G 278 278
135 Hungary 28029 T 278 278
136 Hungary 28030 A 278 278
137 Hungary 28031 T 278 278
138 Hungary 28032 A 278 278
139 Hungary 28033 T 278 278
140 Hungary 28034 T 278 278
141 Hungary 28035 A 278 278
142 Hungary 28036 G 278 278
143 Hungary 28037 A 278 278
144 Hungary 28038 G 278 278
145 Hungary 28039 T 278 278
146 Hungary 28040 A 278 278
147 Hungary 28041 G 278 278
148 Hungary 28042 G 278 278
149 Hungary 28043 A 278 278
150 Hungary 28044 G 278 278
151 Hungary 28045 C 278 278
152 Hungary 28046 T 278 278
153 Hungary 28047 A 278 278
154 Hungary 28048 G T 278 273 Arg52Ile
155 Hungary 28049 A 278 278
156 Hungary 28050 A 278 278
157 Hungary 28051 A 278 278
158 Hungary 28052 A 278 278
159 Hungary 28053 T 278 278
160 Hungary 28054 C 278 278
161 Hungary 28055 A 278 278
162 Hungary 28056 G 278 278
163 Hungary 28057 C 278 278
164 Hungary 28058 A 278 278
165 Hungary 28059 C 278 278
166 Hungary 28060 C 278 278
167 Hungary 28061 T 278 278
168 Hungary 28062 T 278 278
169 Hungary 28063 T 278 278
170 Hungary 28064 A 278 278
171 Hungary 28065 A 278 278
172 Hungary 28066 T 278 278
173 Hungary 28067 T 278 278
174 Hungary 28068 G 278 278
175 Hungary 28069 A 278 278
176 Hungary 28070 A 278 278
177 Hungary 28071 T 278 278
178 Hungary 28072 T 278 278
179 Hungary 28073 G 278 278
180 Hungary 28074 T 278 278
181 Hungary 28075 G 278 278
182 Hungary 28076 C 278 278
183 Hungary 28077 G 278 278
184 Hungary 28078 T 278 278
185 Hungary 28079 G 278 278
186 Hungary 28080 G 278 278
187 Hungary 28081 A 278 278
188 Hungary 28082 T 278 278
189 Hungary 28083 G 278 278
190 Hungary 28084 A 278 278
191 Hungary 28085 G 278 278
192 Hungary 28086 G 278 278
193 Hungary 28087 C T 278 258 Ala65Val
194 Hungary 28088 T 278 278
195 Hungary 28089 G 278 278
196 Hungary 28090 G 278 278
197 Hungary 28091 T 278 278
198 Hungary 28092 T 278 278
199 Hungary 28093 C 278 278
200 Hungary 28094 T 278 278
201 Hungary 28095 A T 278 275 Lys68*
202 Hungary 28096 A 278 278
203 Hungary 28097 A 278 278
204 Hungary 28098 T 278 278
205 Hungary 28099 C 278 278
206 Hungary 28100 A 278 278
207 Hungary 28101 C 278 278
208 Hungary 28102 C 278 278
209 Hungary 28103 C 278 278
210 Hungary 28104 A 278 278
211 Hungary 28105 T 278 278
212 Hungary 28106 T 278 278
213 Hungary 28107 C 278 278
214 Hungary 28108 A 278 278
215 Hungary 28109 G 278 278
216 Hungary 28110 T 278 278
217 Hungary 28111 A G 278 273 Tyr73Cys
218 Hungary 28112 C 278 278
219 Hungary 28113 A 278 278
220 Hungary 28114 T 278 278
221 Hungary 28115 C 278 278
222 Hungary 28116 G 278 278
223 Hungary 28117 A 278 278
224 Hungary 28118 T 278 278
225 Hungary 28119 A 278 278
226 Hungary 28120 T 278 278
227 Hungary 28121 C 278 278
228 Hungary 28122 G 278 278
229 Hungary 28123 G 278 278
230 Hungary 28124 T 278 278
231 Hungary 28125 A 278 278
232 Hungary 28126 A 278 278
233 Hungary 28127 T 278 278
234 Hungary 28128 T 278 278
235 Hungary 28129 A 278 278
236 Hungary 28130 T 278 278
237 Hungary 28131 A 278 278
238 Hungary 28132 C 278 278
239 Hungary 28133 A 278 278
240 Hungary 28134 G 278 278
241 Hungary 28135 T 278 278
242 Hungary 28136 T 278 278
243 Hungary 28137 T 278 278
244 Hungary 28138 C 278 278
245 Hungary 28139 C 278 278
246 Hungary 28140 T 278 278
247 Hungary 28141 G 278 278
248 Hungary 28142 T 278 278
249 Hungary 28143 T 278 278
250 Hungary 28144 T 278 278
251 Hungary 28145 A 278 278
252 Hungary 28146 C 278 278
253 Hungary 28147 C 278 278
254 Hungary 28148 T 278 278
255 Hungary 28149 T 278 278
256 Hungary 28150 T 278 278
257 Hungary 28151 T 278 278
258 Hungary 28152 A 278 278
259 Hungary 28153 C 278 278
260 Hungary 28154 A 278 278
261 Hungary 28155 A 278 278
262 Hungary 28156 T 278 278
263 Hungary 28157 T 278 278
264 Hungary 28158 A 278 278
265 Hungary 28159 A 278 278
266 Hungary 28160 T 278 278
267 Hungary 28161 T 278 278
268 Hungary 28162 G 278 278
269 Hungary 28163 C 278 278
270 Hungary 28164 C 278 278
271 Hungary 28165 A 278 278
272 Hungary 28166 G 278 278
273 Hungary 28167 G 278 278
274 Hungary 28168 A 278 278
275 Hungary 28169 A 278 278
276 Hungary 28170 C 278 278
277 Hungary 28171 C 278 278
278 Hungary 28172 T 278 278
279 Hungary 28173 A 278 278
280 Hungary 28174 A 278 278
281 Hungary 28175 A 278 278
282 Hungary 28176 T 278 278
283 Hungary 28177 T 278 278
284 Hungary 28178 G 278 278
285 Hungary 28179 G 278 278
286 Hungary 28180 G 278 278
287 Hungary 28181 T 278 278
288 Hungary 28182 A 278 278
289 Hungary 28183 G 278 278
290 Hungary 28184 T 278 278
291 Hungary 28185 C 278 278
292 Hungary 28186 T 278 278
293 Hungary 28187 T 278 278
294 Hungary 28188 G 278 278
295 Hungary 28189 T 278 278
296 Hungary 28190 A 278 278
297 Hungary 28191 G 278 278
298 Hungary 28192 T 278 278
299 Hungary 28193 G 278 278
300 Hungary 28194 C 278 278
301 Hungary 28195 G 278 278
302 Hungary 28196 T 278 278
303 Hungary 28197 T 278 278
304 Hungary 28198 G 278 278
305 Hungary 28199 T 278 278
306 Hungary 28200 T 278 278
307 Hungary 28201 C 278 278
308 Hungary 28202 G 278 278
309 Hungary 28203 T 278 278
310 Hungary 28204 T 278 278
311 Hungary 28205 C 278 278
312 Hungary 28206 T 278 278
313 Hungary 28207 A 278 278
314 Hungary 28208 T 278 278
315 Hungary 28209 G 278 278
316 Hungary 28210 A 278 278
317 Hungary 28211 A 278 278
318 Hungary 28212 G 278 278
319 Hungary 28213 A 278 278
320 Hungary 28214 C 278 278
321 Hungary 28215 T 278 278
322 Hungary 28216 T 278 278
323 Hungary 28217 T 278 278
324 Hungary 28218 T 278 278
325 Hungary 28219 T 278 278
326 Hungary 28220 A 278 278
327 Hungary 28221 G 278 278
328 Hungary 28222 A 278 278
329 Hungary 28223 G 278 278
330 Hungary 28224 T 278 278
331 Hungary 28225 A 278 278
332 Hungary 28226 T C 278 277 Tyr111Tyr
333 Hungary 28227 C 278 278
334 Hungary 28228 A 278 278
335 Hungary 28229 T 278 278
336 Hungary 28230 G 278 278
337 Hungary 28231 A 278 278
338 Hungary 28232 C 278 278
339 Hungary 28233 G 278 278
340 Hungary 28234 T 278 278
341 Hungary 28235 T 278 278
342 Hungary 28236 C 278 278
343 Hungary 28237 G 278 278
344 Hungary 28238 T 278 278
345 Hungary 28239 G 278 278
346 Hungary 28240 T 278 278
347 Hungary 28241 T 278 278
348 Hungary 28242 G 278 278
349 Hungary 28243 T 278 278
350 Hungary 28244 T 278 278
351 Hungary 28245 T 278 278
352 Hungary 28246 T 278 278
353 Hungary 28247 A 278 278
354 Hungary 28248 G 278 278
355 Hungary 28249 A 278 278
356 Hungary 28250 T 278 278
357 Hungary 28251 T 278 278
358 Hungary 28252 T 278 278
359 Hungary 28253 C 278 278
360 Hungary 28254 A 278 278
361 Hungary 28255 T 278 278
362 Hungary 28256 C 278 278
363 Hungary 28257 T 278 278
364 Hungary 28258 A 278 278
365 Hungary 28259 A 278 278