National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24         1                              
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                   1                    
T     15                                        
V     36                   1                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Guatemala 27894 A 32 32
1 Guatemala 27895 T 32 32
2 Guatemala 27896 G 32 32
3 Guatemala 27897 A 32 32
4 Guatemala 27898 A 32 32
5 Guatemala 27899 A 32 32
6 Guatemala 27900 T 32 32
7 Guatemala 27901 T 32 32
8 Guatemala 27902 T 32 32
9 Guatemala 27903 C 32 32
10 Guatemala 27904 T 32 32
11 Guatemala 27905 T 32 32
12 Guatemala 27906 G 32 32
13 Guatemala 27907 T 32 32
14 Guatemala 27908 T 32 32
15 Guatemala 27909 T 32 32
16 Guatemala 27910 T 32 32
17 Guatemala 27911 C 32 32
18 Guatemala 27912 T 32 32
19 Guatemala 27913 T 32 32
20 Guatemala 27914 A 32 32
21 Guatemala 27915 G 32 32
22 Guatemala 27916 G 32 32
23 Guatemala 27917 A 32 32
24 Guatemala 27918 A 32 32
25 Guatemala 27919 T 32 32
26 Guatemala 27920 C 32 32
27 Guatemala 27921 A 32 32
28 Guatemala 27922 T 32 32
29 Guatemala 27923 C 32 32
30 Guatemala 27924 A 32 32
31 Guatemala 27925 C 32 32
32 Guatemala 27926 A 32 32
33 Guatemala 27927 A 32 32
34 Guatemala 27928 C 32 32
35 Guatemala 27929 T 32 32
36 Guatemala 27930 G 32 32
37 Guatemala 27931 T 32 32
38 Guatemala 27932 A 32 32
39 Guatemala 27933 G 32 32
40 Guatemala 27934 C 32 32
41 Guatemala 27935 T 32 32
42 Guatemala 27936 G 32 32
43 Guatemala 27937 C 32 32
44 Guatemala 27938 A 32 32
45 Guatemala 27939 T 32 32
46 Guatemala 27940 T 32 32
47 Guatemala 27941 T 32 32
48 Guatemala 27942 C 32 32
49 Guatemala 27943 A 32 32
50 Guatemala 27944 C 32 32
51 Guatemala 27945 C 32 32
52 Guatemala 27946 A 32 32
53 Guatemala 27947 A 32 32
54 Guatemala 27948 G 32 32
55 Guatemala 27949 A 32 32
56 Guatemala 27950 A 32 32
57 Guatemala 27951 T 32 32
58 Guatemala 27952 G 32 32
59 Guatemala 27953 T 32 32
60 Guatemala 27954 A 32 32
61 Guatemala 27955 G 32 32
62 Guatemala 27956 T 32 32
63 Guatemala 27957 T 32 32
64 Guatemala 27958 T 32 32
65 Guatemala 27959 A 32 32
66 Guatemala 27960 C 32 32
67 Guatemala 27961 A 32 32
68 Guatemala 27962 G 32 32
69 Guatemala 27963 T 32 32
70 Guatemala 27964 C T 32 30 Ser24Leu
71 Guatemala 27965 A 32 32
72 Guatemala 27966 T 32 32
73 Guatemala 27967 G 32 32
74 Guatemala 27968 T 32 32
75 Guatemala 27969 A 32 32
76 Guatemala 27970 C 32 32
77 Guatemala 27971 T 32 32
78 Guatemala 27972 C 32 32
79 Guatemala 27973 A 32 32
80 Guatemala 27974 A 32 32
81 Guatemala 27975 C 32 32
82 Guatemala 27976 A 32 32
83 Guatemala 27977 T 32 32
84 Guatemala 27978 C 32 32
85 Guatemala 27979 A 32 32
86 Guatemala 27980 A 32 32
87 Guatemala 27981 C 32 32
88 Guatemala 27982 C 32 32
89 Guatemala 27983 A 32 32
90 Guatemala 27984 T 32 32
91 Guatemala 27985 A 32 32
92 Guatemala 27986 T 32 32
93 Guatemala 27987 G 32 32
94 Guatemala 27988 T 32 32
95 Guatemala 27989 A 32 32
96 Guatemala 27990 G 32 32
97 Guatemala 27991 T 32 32
98 Guatemala 27992 T 32 32
99 Guatemala 27993 G 32 32
100 Guatemala 27994 A 32 32
101 Guatemala 27995 T 32 32
102 Guatemala 27996 G 32 32
103 Guatemala 27997 A 32 32
104 Guatemala 27998 C 32 32
105 Guatemala 27999 C 32 32
106 Guatemala 28000 C 32 32
107 Guatemala 28001 G 32 32
108 Guatemala 28002 T 32 32
109 Guatemala 28003 G 32 32
110 Guatemala 28004 T 32 32
111 Guatemala 28005 C 32 32
112 Guatemala 28006 C 32 32
113 Guatemala 28007 T 32 32
114 Guatemala 28008 A 32 32
115 Guatemala 28009 T 32 32
116 Guatemala 28010 T 32 32
117 Guatemala 28011 C 32 32
118 Guatemala 28012 A 32 32
119 Guatemala 28013 C 32 32
120 Guatemala 28014 T 32 32
121 Guatemala 28015 T 32 32
122 Guatemala 28016 C 32 32
123 Guatemala 28017 T 32 32
124 Guatemala 28018 A 32 32
125 Guatemala 28019 T 32 32
126 Guatemala 28020 T 32 32
127 Guatemala 28021 C 32 32
128 Guatemala 28022 T 32 32
129 Guatemala 28023 A 32 32
130 Guatemala 28024 A 32 32
131 Guatemala 28025 A 32 32
132 Guatemala 28026 T 32 32
133 Guatemala 28027 G 32 32
134 Guatemala 28028 G 32 32
135 Guatemala 28029 T 32 32
136 Guatemala 28030 A 32 32
137 Guatemala 28031 T 32 32
138 Guatemala 28032 A 32 32
139 Guatemala 28033 T 32 32
140 Guatemala 28034 T 32 32
141 Guatemala 28035 A 32 32
142 Guatemala 28036 G 32 32
143 Guatemala 28037 A 32 32
144 Guatemala 28038 G 32 32
145 Guatemala 28039 T 32 32
146 Guatemala 28040 A 32 32
147 Guatemala 28041 G 32 32
148 Guatemala 28042 G 32 32
149 Guatemala 28043 A 32 32
150 Guatemala 28044 G 32 32
151 Guatemala 28045 C 32 32
152 Guatemala 28046 T 32 32
153 Guatemala 28047 A 32 32
154 Guatemala 28048 G 32 32
155 Guatemala 28049 A 32 32
156 Guatemala 28050 A 32 32
157 Guatemala 28051 A 32 32
158 Guatemala 28052 A 32 32
159 Guatemala 28053 T 32 32
160 Guatemala 28054 C 32 32
161 Guatemala 28055 A 32 32
162 Guatemala 28056 G 32 32
163 Guatemala 28057 C 32 32
164 Guatemala 28058 A 32 32
165 Guatemala 28059 C 32 32
166 Guatemala 28060 C 32 32
167 Guatemala 28061 T 32 32
168 Guatemala 28062 T 32 32
169 Guatemala 28063 T 32 32
170 Guatemala 28064 A 32 32
171 Guatemala 28065 A 32 32
172 Guatemala 28066 T 32 32
173 Guatemala 28067 T 32 32
174 Guatemala 28068 G 32 32
175 Guatemala 28069 A 32 32
176 Guatemala 28070 A 32 32
177 Guatemala 28071 T 32 32
178 Guatemala 28072 T 32 32
179 Guatemala 28073 G 32 32
180 Guatemala 28074 T 32 32
181 Guatemala 28075 G 32 32
182 Guatemala 28076 C 32 32
183 Guatemala 28077 G C 32 31 Val62Leu
184 Guatemala 28078 T 32 32
185 Guatemala 28079 G 32 32
186 Guatemala 28080 G 32 32
187 Guatemala 28081 A 32 32
188 Guatemala 28082 T 32 32
189 Guatemala 28083 G 32 32
190 Guatemala 28084 A 32 32
191 Guatemala 28085 G 32 32
192 Guatemala 28086 G 32 32
193 Guatemala 28087 C 32 32
194 Guatemala 28088 T 32 32
195 Guatemala 28089 G 32 32
196 Guatemala 28090 G 32 32
197 Guatemala 28091 T 32 32
198 Guatemala 28092 T 32 32
199 Guatemala 28093 C 32 32
200 Guatemala 28094 T 32 32
201 Guatemala 28095 A 32 32
202 Guatemala 28096 A 32 32
203 Guatemala 28097 A 32 32
204 Guatemala 28098 T 32 32
205 Guatemala 28099 C 32 32
206 Guatemala 28100 A 32 32
207 Guatemala 28101 C 32 32
208 Guatemala 28102 C 32 32
209 Guatemala 28103 C 32 32
210 Guatemala 28104 A 32 32
211 Guatemala 28105 T 32 32
212 Guatemala 28106 T 32 32
213 Guatemala 28107 C 32 32
214 Guatemala 28108 A 32 32
215 Guatemala 28109 G 32 32
216 Guatemala 28110 T 32 32
217 Guatemala 28111 A 32 32
218 Guatemala 28112 C 32 32
219 Guatemala 28113 A 32 32
220 Guatemala 28114 T 32 32
221 Guatemala 28115 C 32 32
222 Guatemala 28116 G 32 32
223 Guatemala 28117 A 32 32
224 Guatemala 28118 T 32 32
225 Guatemala 28119 A 32 32
226 Guatemala 28120 T 32 32
227 Guatemala 28121 C 32 32
228 Guatemala 28122 G 32 32
229 Guatemala 28123 G 32 32
230 Guatemala 28124 T 32 32
231 Guatemala 28125 A 32 32
232 Guatemala 28126 A 32 32
233 Guatemala 28127 T 32 32
234 Guatemala 28128 T 32 32
235 Guatemala 28129 A 32 32
236 Guatemala 28130 T 32 32
237 Guatemala 28131 A 32 32
238 Guatemala 28132 C 32 32
239 Guatemala 28133 A 32 32
240 Guatemala 28134 G 32 32
241 Guatemala 28135 T 32 32
242 Guatemala 28136 T 32 32
243 Guatemala 28137 T 32 32
244 Guatemala 28138 C 32 32
245 Guatemala 28139 C 32 32
246 Guatemala 28140 T 32 32
247 Guatemala 28141 G 32 32
248 Guatemala 28142 T 32 32
249 Guatemala 28143 T 32 32
250 Guatemala 28144 T C 32 31 Leu84Ser
251 Guatemala 28145 A 32 32
252 Guatemala 28146 C 32 32
253 Guatemala 28147 C 32 32
254 Guatemala 28148 T 32 32
255 Guatemala 28149 T 32 32
256 Guatemala 28150 T 32 32
257 Guatemala 28151 T 32 32
258 Guatemala 28152 A 32 32
259 Guatemala 28153 C 32 32
260 Guatemala 28154 A 32 32
261 Guatemala 28155 A 32 32
262 Guatemala 28156 T 32 32
263 Guatemala 28157 T 32 32
264 Guatemala 28158 A 32 32
265 Guatemala 28159 A 32 32
266 Guatemala 28160 T 32 32
267 Guatemala 28161 T 32 32
268 Guatemala 28162 G 32 32
269 Guatemala 28163 C 32 32
270 Guatemala 28164 C 32 32
271 Guatemala 28165 A 32 32
272 Guatemala 28166 G 32 32
273 Guatemala 28167 G 32 32
274 Guatemala 28168 A 32 32
275 Guatemala 28169 A 32 32
276 Guatemala 28170 C 32 32
277 Guatemala 28171 C 32 32
278 Guatemala 28172 T 32 32
279 Guatemala 28173 A 32 32
280 Guatemala 28174 A 32 32
281 Guatemala 28175 A 32 32
282 Guatemala 28176 T 32 32
283 Guatemala 28177 T 32 32
284 Guatemala 28178 G 32 32
285 Guatemala 28179 G 32 32
286 Guatemala 28180 G 32 32
287 Guatemala 28181 T 32 32
288 Guatemala 28182 A 32 32
289 Guatemala 28183 G 32 32
290 Guatemala 28184 T 32 32
291 Guatemala 28185 C 32 32
292 Guatemala 28186 T 32 32
293 Guatemala 28187 T 32 32
294 Guatemala 28188 G 32 32
295 Guatemala 28189 T 32 32
296 Guatemala 28190 A 32 32
297 Guatemala 28191 G 32 32
298 Guatemala 28192 T 32 32
299 Guatemala 28193 G 32 32
300 Guatemala 28194 C 32 32
301 Guatemala 28195 G 32 32
302 Guatemala 28196 T 32 32
303 Guatemala 28197 T 32 32
304 Guatemala 28198 G 32 32
305 Guatemala 28199 T 32 32
306 Guatemala 28200 T 32 32
307 Guatemala 28201 C 32 32
308 Guatemala 28202 G 32 32
309 Guatemala 28203 T 32 32
310 Guatemala 28204 T 32 32
311 Guatemala 28205 C 32 32
312 Guatemala 28206 T 32 32
313 Guatemala 28207 A 32 32
314 Guatemala 28208 T 32 32
315 Guatemala 28209 G 32 32
316 Guatemala 28210 A 32 32
317 Guatemala 28211 A 32 32
318 Guatemala 28212 G 32 32
319 Guatemala 28213 A 32 32
320 Guatemala 28214 C 32 32
321 Guatemala 28215 T 32 32
322 Guatemala 28216 T 32 32
323 Guatemala 28217 T 32 32
324 Guatemala 28218 T 32 32
325 Guatemala 28219 T 32 32
326 Guatemala 28220 A 32 32
327 Guatemala 28221 G 32 32
328 Guatemala 28222 A 32 32
329 Guatemala 28223 G 32 32
330 Guatemala 28224 T 32 32
331 Guatemala 28225 A 32 32
332 Guatemala 28226 T 32 32
333 Guatemala 28227 C 32 32
334 Guatemala 28228 A 32 32
335 Guatemala 28229 T 32 32
336 Guatemala 28230 G 32 32
337 Guatemala 28231 A 32 32
338 Guatemala 28232 C 32 32
339 Guatemala 28233 G 32 32
340 Guatemala 28234 T 32 32
341 Guatemala 28235 T 32 32
342 Guatemala 28236 C 32 32
343 Guatemala 28237 G 32 32
344 Guatemala 28238 T 32 32
345 Guatemala 28239 G 32 32
346 Guatemala 28240 T 32 32
347 Guatemala 28241 T 32 32
348 Guatemala 28242 G 32 32
349 Guatemala 28243 T 32 32
350 Guatemala 28244 T 32 32
351 Guatemala 28245 T 32 32
352 Guatemala 28246 T 32 32
353 Guatemala 28247 A 32 32
354 Guatemala 28248 G 32 32
355 Guatemala 28249 A 32 32
356 Guatemala 28250 T 32 32
357 Guatemala 28251 T 32 32
358 Guatemala 28252 T 32 32
359 Guatemala 28253 C T 32 30 Phe120Phe
360 Guatemala 28254 A 32 32
361 Guatemala 28255 T 32 32
362 Guatemala 28256 C 32 32
363 Guatemala 28257 T 32 32
364 Guatemala 28258 A 32 32
365 Guatemala 28259 A 32 32