National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1        
C     21                                        
D     22     1                                  
E     18           1                            
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q 1   18                                        
R     12               1                        
S     27                                        
T     15                                        
V     36                   1               1    
W     3                                        
Y     21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Greece 27894 A 140 140
1 Greece 27895 T 140 140
2 Greece 27896 G 140 140
3 Greece 27897 A 140 140
4 Greece 27898 A 140 140
5 Greece 27899 A 140 140
6 Greece 27900 T 140 140
7 Greece 27901 T 140 140
8 Greece 27902 T 140 140
9 Greece 27903 C 140 140
10 Greece 27904 T 140 140
11 Greece 27905 T 140 140
12 Greece 27906 G 140 140
13 Greece 27907 T 140 140
14 Greece 27908 T 140 140
15 Greece 27909 T 140 140
16 Greece 27910 T 140 140
17 Greece 27911 C 140 140
18 Greece 27912 T 140 140
19 Greece 27913 T 140 140
20 Greece 27914 A 140 140
21 Greece 27915 G 140 140
22 Greece 27916 G 140 140
23 Greece 27917 A 140 140
24 Greece 27918 A 140 140
25 Greece 27919 T 140 140
26 Greece 27920 C 140 140
27 Greece 27921 A 140 140
28 Greece 27922 T 140 140
29 Greece 27923 C 140 140
30 Greece 27924 A 140 140
31 Greece 27925 C 140 140
32 Greece 27926 A 140 140
33 Greece 27927 A 140 140
34 Greece 27928 C 140 140
35 Greece 27929 T 140 140
36 Greece 27930 G 140 140
37 Greece 27931 T 140 140
38 Greece 27932 A 140 140
39 Greece 27933 G 140 140
40 Greece 27934 C 140 140
41 Greece 27935 T 140 140
42 Greece 27936 G 140 140
43 Greece 27937 C 140 140
44 Greece 27938 A 140 140
45 Greece 27939 T 140 140
46 Greece 27940 T 140 140
47 Greece 27941 T 140 140
48 Greece 27942 C 140 140
49 Greece 27943 A 140 140
50 Greece 27944 C 140 140
51 Greece 27945 C 140 140
52 Greece 27946 A 140 140
53 Greece 27947 A 140 140
54 Greece 27948 G 140 140
55 Greece 27949 A 140 140
56 Greece 27950 A 140 140
57 Greece 27951 T 140 140
58 Greece 27952 G 140 140
59 Greece 27953 T 140 140
60 Greece 27954 A 140 140
61 Greece 27955 G 140 140
62 Greece 27956 T 140 140
63 Greece 27957 T 140 140
64 Greece 27958 T 140 140
65 Greece 27959 A 140 140
66 Greece 27960 C 140 140
67 Greece 27961 A 140 140
68 Greece 27962 G 140 140
69 Greece 27963 T 140 140
70 Greece 27964 C 140 140
71 Greece 27965 A 140 140
72 Greece 27966 T 140 140
73 Greece 27967 G 140 140
74 Greece 27968 T 140 140
75 Greece 27969 A 140 140
76 Greece 27970 C 140 140
77 Greece 27971 T 140 140
78 Greece 27972 C T 140 136 Gln27*
79 Greece 27973 A 140 140
80 Greece 27974 A 140 140
81 Greece 27975 C 140 140
82 Greece 27976 A 140 140
83 Greece 27977 T 140 140
84 Greece 27978 C 140 140
85 Greece 27979 A 140 140
86 Greece 27980 A 140 140
87 Greece 27981 C 140 140
88 Greece 27982 C 140 140
89 Greece 27983 A 140 140
90 Greece 27984 T 140 140
91 Greece 27985 A 140 140
92 Greece 27986 T 140 140
93 Greece 27987 G 140 140
94 Greece 27988 T 140 140
95 Greece 27989 A 140 140
96 Greece 27990 G 140 140
97 Greece 27991 T 140 140
98 Greece 27992 T 140 140
99 Greece 27993 G 140 140
100 Greece 27994 A 140 140
101 Greece 27995 T 140 140
102 Greece 27996 G 140 140
103 Greece 27997 A 140 140
104 Greece 27998 C T 140 139 Asp35Asp
105 Greece 27999 C 140 140
106 Greece 28000 C 140 140
107 Greece 28001 G 140 140
108 Greece 28002 T 140 140
109 Greece 28003 G 140 140
110 Greece 28004 T 140 140
111 Greece 28005 C 140 140
112 Greece 28006 C 140 140
113 Greece 28007 T 140 140
114 Greece 28008 A 140 140
115 Greece 28009 T 140 140
116 Greece 28010 T 140 140
117 Greece 28011 C 140 140
118 Greece 28012 A 140 140
119 Greece 28013 C 140 140
120 Greece 28014 T 140 140
121 Greece 28015 T 140 140
122 Greece 28016 C 140 140
123 Greece 28017 T 140 140
124 Greece 28018 A 140 140
125 Greece 28019 T 140 140
126 Greece 28020 T 140 140
127 Greece 28021 C 140 140
128 Greece 28022 T 140 140
129 Greece 28023 A 140 140
130 Greece 28024 A 140 140
131 Greece 28025 A 140 140
132 Greece 28026 T 140 140
133 Greece 28027 G 140 140
134 Greece 28028 G 140 140
135 Greece 28029 T 140 140
136 Greece 28030 A 140 140
137 Greece 28031 T 140 140
138 Greece 28032 A 140 140
139 Greece 28033 T 140 140
140 Greece 28034 T 140 140
141 Greece 28035 A 140 140
142 Greece 28036 G 140 140
143 Greece 28037 A 140 140
144 Greece 28038 G 140 140
145 Greece 28039 T 140 140
146 Greece 28040 A 140 140
147 Greece 28041 G 140 140
148 Greece 28042 G 140 140
149 Greece 28043 A 140 140
150 Greece 28044 G 140 140
151 Greece 28045 C 140 140
152 Greece 28046 T 140 140
153 Greece 28047 A 140 140
154 Greece 28048 G T 140 136 Arg52Ile
155 Greece 28049 A 140 140
156 Greece 28050 A 140 140
157 Greece 28051 A 140 140
158 Greece 28052 A 140 140
159 Greece 28053 T 140 140
160 Greece 28054 C 140 140
161 Greece 28055 A 140 140
162 Greece 28056 G 140 140
163 Greece 28057 C 140 140
164 Greece 28058 A 140 140
165 Greece 28059 C 140 140
166 Greece 28060 C 140 140
167 Greece 28061 T 140 140
168 Greece 28062 T 140 140
169 Greece 28063 T 140 140
170 Greece 28064 A 140 140
171 Greece 28065 A 140 140
172 Greece 28066 T 140 140
173 Greece 28067 T 140 140
174 Greece 28068 G 140 140
175 Greece 28069 A 140 140
176 Greece 28070 A 140 140
177 Greece 28071 T 140 140
178 Greece 28072 T 140 140
179 Greece 28073 G 140 140
180 Greece 28074 T 140 140
181 Greece 28075 G 140 140
182 Greece 28076 C 140 140
183 Greece 28077 G T 140 139 Val62Leu
184 Greece 28078 T 140 140
185 Greece 28079 G T 140 139 Val62Val
186 Greece 28080 G 140 140
187 Greece 28081 A 140 140
188 Greece 28082 T 140 140
189 Greece 28083 G 140 140
190 Greece 28084 A 140 140
191 Greece 28085 G 140 140
192 Greece 28086 G T 140 139 Ala65Ser
193 Greece 28087 C 140 140
194 Greece 28088 T 140 140
195 Greece 28089 G 140 140
196 Greece 28090 G 140 140
197 Greece 28091 T 140 140
198 Greece 28092 T 140 140
199 Greece 28093 C 140 140
200 Greece 28094 T 140 137
201 Greece 28095 A 140 137
202 Greece 28096 A 140 137
203 Greece 28097 A 140 137
204 Greece 28098 T 140 137
205 Greece 28099 C 140 137
206 Greece 28100 A 140 137
207 Greece 28101 C 140 137
208 Greece 28102 C 140 137
209 Greece 28103 C 140 137
210 Greece 28104 A 140 137
211 Greece 28105 T 140 137
212 Greece 28106 T 140 137
213 Greece 28107 C 140 137
214 Greece 28108 A 140 137
215 Greece 28109 G 140 137
216 Greece 28110 T 140 137
217 Greece 28111 A G 140 133 Tyr73Cys
218 Greece 28112 C 140 137
219 Greece 28113 A 140 137
220 Greece 28114 T 140 137
221 Greece 28115 C 140 137
222 Greece 28116 G 140 137
223 Greece 28117 A 140 137
224 Greece 28118 T 140 137
225 Greece 28119 A 140 137
226 Greece 28120 T 140 137
227 Greece 28121 C 140 137
228 Greece 28122 G 140 137
229 Greece 28123 G 140 137
230 Greece 28124 T 140 137
231 Greece 28125 A 140 137
232 Greece 28126 A 140 137
233 Greece 28127 T 140 137
234 Greece 28128 T 140 137
235 Greece 28129 A 140 137
236 Greece 28130 T 140 137
237 Greece 28131 A 140 137
238 Greece 28132 C 140 140
239 Greece 28133 A 140 140
240 Greece 28134 G 140 140
241 Greece 28135 T 140 140
242 Greece 28136 T 140 140
243 Greece 28137 T 140 140
244 Greece 28138 C 140 140
245 Greece 28139 C 140 140
246 Greece 28140 T 140 140
247 Greece 28141 G 140 140
248 Greece 28142 T 140 140
249 Greece 28143 T 140 140
250 Greece 28144 T C 140 134 Leu84Ser
251 Greece 28145 A 140 140
252 Greece 28146 C 140 140
253 Greece 28147 C 140 140
254 Greece 28148 T 140 140
255 Greece 28149 T 140 140
256 Greece 28150 T 140 140
257 Greece 28151 T 140 140
258 Greece 28152 A 140 140
259 Greece 28153 C 140 140
260 Greece 28154 A 140 140
261 Greece 28155 A 140 140
262 Greece 28156 T 140 140
263 Greece 28157 T 140 140
264 Greece 28158 A 140 140
265 Greece 28159 A 140 140
266 Greece 28160 T 140 140
267 Greece 28161 T 140 140
268 Greece 28162 G 140 140
269 Greece 28163 C 140 140
270 Greece 28164 C 140 140
271 Greece 28165 A 140 140
272 Greece 28166 G 140 140
273 Greece 28167 G 140 140
274 Greece 28168 A 140 140
275 Greece 28169 A 140 140
276 Greece 28170 C 140 140
277 Greece 28171 C 140 140
278 Greece 28172 T 140 140
279 Greece 28173 A 140 140
280 Greece 28174 A 140 140
281 Greece 28175 A 140 140
282 Greece 28176 T 140 140
283 Greece 28177 T 140 140
284 Greece 28178 G 140 140
285 Greece 28179 G 140 140
286 Greece 28180 G 140 140
287 Greece 28181 T 140 140
288 Greece 28182 A 139 139
289 Greece 28183 G 139 139
290 Greece 28184 T 139 139
291 Greece 28185 C 139 139
292 Greece 28186 T 139 139
293 Greece 28187 T 139 139
294 Greece 28188 G 139 139
295 Greece 28189 T 139 139
296 Greece 28190 A 139 139
297 Greece 28191 G 139 139
298 Greece 28192 T 139 139
299 Greece 28193 G 139 139
300 Greece 28194 C 139 139
301 Greece 28195 G 139 139
302 Greece 28196 T 139 139
303 Greece 28197 T 139 139
304 Greece 28198 G 139 139
305 Greece 28199 T 139 139
306 Greece 28200 T 139 139
307 Greece 28201 C 139 139
308 Greece 28202 G 139 139
309 Greece 28203 T 139 139
310 Greece 28204 T 139 139
311 Greece 28205 C 139 139
312 Greece 28206 T 139 139
313 Greece 28207 A 139 139
314 Greece 28208 T 139 139
315 Greece 28209 G 139 139
316 Greece 28210 A G 139 138 Glu106Gly
317 Greece 28211 A 139 139
318 Greece 28212 G 139 139
319 Greece 28213 A 139 139
320 Greece 28214 C 139 139
321 Greece 28215 T 139 139
322 Greece 28216 T 139 139
323 Greece 28217 T 139 139
324 Greece 28218 T 139 139
325 Greece 28219 T 139 139
326 Greece 28220 A 139 139
327 Greece 28221 G 139 139
328 Greece 28222 A 139 139
329 Greece 28223 G 139 139
330 Greece 28224 T 139 139
331 Greece 28225 A 139 139
332 Greece 28226 T 139 139
333 Greece 28227 C 139 139
334 Greece 28228 A 139 139
335 Greece 28229 T 139 139
336 Greece 28230 G 139 139
337 Greece 28231 A 139 139
338 Greece 28232 C 139 139
339 Greece 28233 G 139 139
340 Greece 28234 T 139 139
341 Greece 28235 T 139 139
342 Greece 28236 C 139 139
343 Greece 28237 G 139 139
344 Greece 28238 T 139 139
345 Greece 28239 G 139 139
346 Greece 28240 T 139 139
347 Greece 28241 T 139 139
348 Greece 28242 G 139 139
349 Greece 28243 T 139 139
350 Greece 28244 T 139 139
351 Greece 28245 T 139 139
352 Greece 28246 T 139 139
353 Greece 28247 A 139 139
354 Greece 28248 G 139 139
355 Greece 28249 A 139 139
356 Greece 28250 T 139 139
357 Greece 28251 T 139 139
358 Greece 28252 T 139 139
359 Greece 28253 C 139 138
360 Greece 28254 A 139 139
361 Greece 28255 T 139 139
362 Greece 28256 C 139 139
363 Greece 28257 T 139 139
364 Greece 28258 A 139 139
365 Greece 28259 A 139 139