National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15 1                             1 1 1    
C     21   2     2                     1        
D     22 1   2     1 1         1                
E 4   18 1   2 1   1     1         1            
F     24         1         2                    
G 1   15                             1     1    
H     12             1               1         3
I     30         1     5   1             2      
K 1   15                 1     1                
L     30         2         4           1        
M     3                                        
N     6                                        
P     21                   3     3     3        
Q 3   18                 1                      
R     12   1           1                        
S     27         1         2   1       3        
T     15               3                 2      
V     36                   4               2    
W     3                   1                    
Y     21   1     1   1                         1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Germany 27894 A 3873 3873
1 Germany 27895 T 3873 3873
2 Germany 27896 G 3873 3873
3 Germany 27897 A 3873 3873
4 Germany 27898 A 3873 3873
5 Germany 27899 A T 3873 3872 Lys2Asn
6 Germany 27900 T C 3873 3867 Phe3Leu
7 Germany 27901 T 3873 3873
8 Germany 27902 T 3873 3873
9 Germany 27903 C T 3873 3856 Leu4Phe
10 Germany 27904 T 3873 3873
11 Germany 27905 T 3873 3873
12 Germany 27906 G 3873 3873
13 Germany 27907 T 3874 3874
14 Germany 27908 T 3874 3874
15 Germany 27909 T 3874 3874
16 Germany 27910 T 3874 3874
17 Germany 27911 C 3874 3874
18 Germany 27912 T 3874 3874
19 Germany 27913 T 3874 3874
20 Germany 27914 A G,T 3874 3871 Leu7Phe-p.Leu7Leu
21 Germany 27915 G A 3874 3871 Gly8Arg
22 Germany 27916 G T 3874 3873 Gly8Val
23 Germany 27917 A 3874 3874
24 Germany 27918 A 3874 3874
25 Germany 27919 T 3874 3874
26 Germany 27920 C T 3874 3871 Ile9Ile
27 Germany 27921 A 3874 3874
28 Germany 27922 T C 3874 3858 Ile10Thr
29 Germany 27923 C T 3875 3874 Ile10Ile
30 Germany 27924 A 3875 3875
31 Germany 27925 C T 3875 3874 Thr11Ile
32 Germany 27926 A 3875 3875
33 Germany 27927 A 3875 3875
34 Germany 27928 C 3875 3875
35 Germany 27929 T C 3875 3874 Thr12Thr
36 Germany 27930 G 3875 3875
37 Germany 27931 T 3875 3875
38 Germany 27932 A 3875 3875
39 Germany 27933 G 3875 3875
40 Germany 27934 C 3875 3875
41 Germany 27935 T 3875 3875
42 Germany 27936 G 3875 3875
43 Germany 27937 C 3875 3875
44 Germany 27938 A 3875 3875
45 Germany 27939 T 3875 3875
46 Germany 27940 T 3875 3875
47 Germany 27941 T 3875 3875
48 Germany 27942 C T 3875 3872 His17Tyr
49 Germany 27943 A 3875 3875
50 Germany 27944 C T 3875 3658 His17His
51 Germany 27945 C T,A 3875 3872 Gln18*-p.Gln18Lys
52 Germany 27946 A 3875 3875
53 Germany 27947 A 3875 3875
54 Germany 27948 G T 3875 3872 Glu19*
55 Germany 27949 A 3875 3875
56 Germany 27950 A 3875 3875
57 Germany 27951 T 3875 3875
58 Germany 27952 G 3875 3875
59 Germany 27953 T 3875 3875
60 Germany 27954 A 3875 3875
61 Germany 27955 G A 3875 3874 Ser21Asn
62 Germany 27956 T 3875 3875
63 Germany 27957 T 3875 3875
64 Germany 27958 T 3875 3875
65 Germany 27959 A 3875 3875
66 Germany 27960 C T 3875 3874 Gln23*
67 Germany 27961 A 3875 3875
68 Germany 27962 G 3875 3875
69 Germany 27963 T 3875 3875
70 Germany 27964 C T 3875 3873 Ser24Leu
71 Germany 27965 A T 3875 3874 Ser24Ser
72 Germany 27966 T 3875 3875
73 Germany 27967 G 3875 3875
74 Germany 27968 T 3875 3875
75 Germany 27969 A 3875 3875
76 Germany 27970 C T 3875 3867 Thr26Ile
77 Germany 27971 T 3875 3875
78 Germany 27972 C T 3875 3857 Gln27*
79 Germany 27973 A 3875 3875
80 Germany 27974 A 3875 3875
81 Germany 27975 C 3875 3875
82 Germany 27976 A 3875 3875
83 Germany 27977 T 3875 3875
84 Germany 27978 C 3875 3875
85 Germany 27979 A 3875 3875
86 Germany 27980 A 3875 3875
87 Germany 27981 C 3875 3875
88 Germany 27982 C T 3875 3848 Pro30Leu
89 Germany 27983 A 3875 3874
90 Germany 27984 T 3875 3874
91 Germany 27985 A 3875 3874
92 Germany 27986 T 3875 3874
93 Germany 27987 G T 3875 3872 Val32Leu
94 Germany 27988 T 3875 3874
95 Germany 27989 A 3875 3874
96 Germany 27990 G 3875 3874
97 Germany 27991 T 3875 3874
98 Germany 27992 T 3875 3874
99 Germany 27993 G 3875 3874
100 Germany 27994 A 3875 3874
101 Germany 27995 T 3875 3874
102 Germany 27996 G A 3875 3873 Asp35Asn
103 Germany 27997 A G 3875 3873 Asp35Gly
104 Germany 27998 C 3875 3874
105 Germany 27999 C T 3875 3857 Pro36Ser
106 Germany 28000 C T 3875 3872 Pro36Leu
107 Germany 28001 G T,A 3875 3867 Pro36Pro-p.Pro36Pro
108 Germany 28002 T 3875 3874
109 Germany 28003 G T,C 3872 3869 Cys37Phe-p.Cys37Ser
110 Germany 28004 T 3872 3871
111 Germany 28005 C 3872 3871
112 Germany 28006 C 3869 3868
113 Germany 28007 T 3867 3866
114 Germany 28008 A 3866 3865
115 Germany 28009 T C 3865 3863 Ile39Thr
116 Germany 28010 T 3864 3861
117 Germany 28011 C T 3864 3860 His40Tyr
118 Germany 28012 A 3864 3861
119 Germany 28013 C 3864 3859
120 Germany 28014 T 3864 3859
121 Germany 28015 T 3863 3858
122 Germany 28016 C 3863 3858
123 Germany 28017 T 3863 3858
124 Germany 28018 A T 3863 3858 Tyr42Phe
125 Germany 28019 T 3863 3859
126 Germany 28020 T 3863 3859
127 Germany 28021 C 3863 3859
128 Germany 28022 T 3863 3859
129 Germany 28023 A 3863 3859
130 Germany 28024 A 3863 3859
131 Germany 28025 A G 3863 3849 Lys44Lys
132 Germany 28026 T 3863 3859
133 Germany 28027 G T 3863 3858 Trp45Leu
134 Germany 28028 G 3863 3858
135 Germany 28029 T 3863 3859
136 Germany 28030 A 3863 3859
137 Germany 28031 T 3863 3859
138 Germany 28032 A 3863 3859
139 Germany 28033 T 3863 3859
140 Germany 28034 T 3863 3859
141 Germany 28035 A 3863 3858
142 Germany 28036 G 3863 3858
143 Germany 28037 A 3863 3858
144 Germany 28038 G 3863 3858
145 Germany 28039 T 3863 3858
146 Germany 28040 A 3863 3858
147 Germany 28041 G T 3863 3858 Gly50*
148 Germany 28042 G 3863 3859
149 Germany 28043 A 3863 3859
150 Germany 28044 G 3863 3860
151 Germany 28045 C 3863 3861
152 Germany 28046 T 3863 3861
153 Germany 28047 A 3863 3861
154 Germany 28048 G T 3863 3843 Arg52Ile
155 Germany 28049 A 3863 3861
156 Germany 28050 A 3863 3861
157 Germany 28051 A 3863 3861
158 Germany 28052 A 3863 3860
159 Germany 28053 T 3863 3861
160 Germany 28054 C T 3863 3858 Ser54Leu
161 Germany 28055 A 3863 3861
162 Germany 28056 G A 3863 3856 Ala55Thr
163 Germany 28057 C 3863 3861
164 Germany 28058 A 3863 3861
165 Germany 28059 C 3863 3861
166 Germany 28060 C 3863 3862
167 Germany 28061 T 3863 3862
168 Germany 28062 T 3863 3862
169 Germany 28063 T 3863 3862
170 Germany 28064 A G 3863 3860 Leu57Leu
171 Germany 28065 A T 3863 3860 Ile58Phe
172 Germany 28066 T 3863 3861
173 Germany 28067 T 3863 3861
174 Germany 28068 G 3863 3862
175 Germany 28069 A 3863 3862
176 Germany 28070 A 3863 3862
177 Germany 28071 T 3863 3862
178 Germany 28072 T 3863 3862
179 Germany 28073 G A 3863 3861 Leu60Leu
180 Germany 28074 T 3858 3857
181 Germany 28075 G 3858 3857
182 Germany 28076 C T 3858 3856 Cys61Cys
183 Germany 28077 G T,C 3858 3840 Val62Leu-p.Val62Leu
184 Germany 28078 T 3858 3857
185 Germany 28079 G T 3858 3851 Val62Val
186 Germany 28080 G 3858 3857
187 Germany 28081 A 3858 3857
188 Germany 28082 T 3859 3859
189 Germany 28083 G T 3860 3857 Glu64*
190 Germany 28084 A C 3860 3858 Glu64Ala
191 Germany 28085 G T 3861 3855 Glu64Asp
192 Germany 28086 G T 3862 3856 Ala65Ser
193 Germany 28087 C T 3862 3850 Ala65Val
194 Germany 28088 T C 3864 3859 Ala65Ala
195 Germany 28089 G 3866 3866
196 Germany 28090 G 3867 3867
197 Germany 28091 T 3867 3867
198 Germany 28092 T 3867 3867
199 Germany 28093 C T 3867 3856 Ser67Phe
200 Germany 28094 T 3867 3867
201 Germany 28095 A T 3867 3863 Lys68*
202 Germany 28096 A 3867 3867
203 Germany 28097 A 3867 3867
204 Germany 28098 T 3867 3867
205 Germany 28099 C 3869 3869
206 Germany 28100 A 3869 3869
207 Germany 28101 C T 3870 3869 Pro70Ser
208 Germany 28102 C 3870 3870
209 Germany 28103 C 3870 3870
210 Germany 28104 A 3871 3871
211 Germany 28105 T 3881 3881
212 Germany 28106 T 3892 3892
213 Germany 28107 C 3892 3892
214 Germany 28108 A 3892 3892
215 Germany 28109 G 3892 3892
216 Germany 28110 T C 3892 3891 Tyr73His
217 Germany 28111 A G 3892 3875 Tyr73Cys
218 Germany 28112 C 3892 3892
219 Germany 28113 A 3892 3892
220 Germany 28114 T 3892 3892
221 Germany 28115 C 3892 3892
222 Germany 28116 G 3892 3892
223 Germany 28117 A 3892 3892
224 Germany 28118 T 3892 3892
225 Germany 28119 A 3892 3892
226 Germany 28120 T 3892 3892
227 Germany 28121 C T 3892 3890 Ile76Ile
228 Germany 28122 G 3892 3892
229 Germany 28123 G 3892 3892
230 Germany 28124 T 3892 3892
231 Germany 28125 A 3892 3892
232 Germany 28126 A 3892 3892
233 Germany 28127 T 3892 3892
234 Germany 28128 T 3892 3892
235 Germany 28129 A 3892 3892
236 Germany 28130 T 3892 3892
237 Germany 28131 A 3892 3892
238 Germany 28132 C 3892 3892
239 Germany 28133 A T 3892 3831 Thr80Thr
240 Germany 28134 G C 3896 3895 Val81Leu
241 Germany 28135 T 3896 3896
242 Germany 28136 T 3896 3896
243 Germany 28137 T 3896 3895
244 Germany 28138 C 3896 3896
245 Germany 28139 C A 3896 3893 Ser82Ser
246 Germany 28140 T 3896 3895
247 Germany 28141 G 3896 3896
248 Germany 28142 T 3896 3896
249 Germany 28143 T 3896 3896
250 Germany 28144 T C 3895 3708 Leu84Ser
251 Germany 28145 A 3895 3895
252 Germany 28146 C T 3894 3893 Pro85Ser
253 Germany 28147 C 3894 3894
254 Germany 28148 T 3894 3894
255 Germany 28149 T C 3894 3893 Phe86Leu
256 Germany 28150 T 3894 3894
257 Germany 28151 T 3894 3894
258 Germany 28152 A 3894 3894
259 Germany 28153 C T 3894 3893 Thr87Ile
260 Germany 28154 A 3893 3893
261 Germany 28155 A 3892 3892
262 Germany 28156 T 3891 3891
263 Germany 28157 T 3890 3890
264 Germany 28158 A 3890 3890
265 Germany 28159 A 3890 3889
266 Germany 28160 T 3890 3889
267 Germany 28161 T 3890 3889
268 Germany 28162 G 3890 3889
269 Germany 28163 C T 3889 3887 Cys90Cys
270 Germany 28164 C 3887 3886
271 Germany 28165 A 3886 3885
272 Germany 28166 G 3885 3884
273 Germany 28167 G A 3885 3883 Glu92Lys
274 Germany 28168 A 3885 3883
275 Germany 28169 A G 3885 3879 Glu92Glu
276 Germany 28170 C 3885 3883
277 Germany 28171 C T 3885 3881 Pro93Leu
278 Germany 28172 T C 3885 3882 Pro93Pro
279 Germany 28173 A 3884 3882
280 Germany 28174 A 3884 3881
281 Germany 28175 A 3884 3881
282 Germany 28176 T 3884 3881
283 Germany 28177 T 3884 3881
284 Germany 28178 G 3884 3881
285 Germany 28179 G 3884 3881
286 Germany 28180 G 3884 3881
287 Germany 28181 T 3884 3881
288 Germany 28182 A 3884 3881
289 Germany 28183 G 3884 3882
290 Germany 28184 T 3884 3882
291 Germany 28185 C 3884 3883
292 Germany 28186 T 3884 3883
293 Germany 28187 T C 3884 3882 Leu98Leu
294 Germany 28188 G 3884 3883
295 Germany 28189 T 3884 3883
296 Germany 28190 A 3884 3883
297 Germany 28191 G 3884 3883
298 Germany 28192 T 3884 3883
299 Germany 28193 G 3885 3884
300 Germany 28194 C T 3885 3883 Arg101Cys
301 Germany 28195 G 3885 3884
302 Germany 28196 T 3885 3884
303 Germany 28197 T 3885 3884
304 Germany 28198 G T 3885 3883 Cys102Phe
305 Germany 28199 T 3885 3885
306 Germany 28200 T 3885 3885
307 Germany 28201 C 3885 3885
308 Germany 28202 G A 3885 3884 Ser103Ser
309 Germany 28203 T 3885 3885
310 Germany 28204 T 3885 3885
311 Germany 28205 C 3885 3885
312 Germany 28206 T 3885 3885
313 Germany 28207 A 3885 3885
314 Germany 28208 T 3885 3885
315 Germany 28209 G C,T 3885 3871 Glu106*-p.Glu106Gln
316 Germany 28210 A 3885 3885
317 Germany 28211 A 3885 3885
318 Germany 28212 G 3885 3885
319 Germany 28213 A 3885 3885
320 Germany 28214 C T 3885 3884 Asp107Asp
321 Germany 28215 T 3885 3885
322 Germany 28216 T 3885 3885
323 Germany 28217 T 3885 3885
324 Germany 28218 T 3885 3885
325 Germany 28219 T 3885 3885
326 Germany 28220 A 3885 3885
327 Germany 28221 G T 3885 3884 Glu110*
328 Germany 28222 A G 3884 3883 Glu110Gly
329 Germany 28223 G T 3884 3879 Glu110Asp
330 Germany 28224 T 3884 3884
331 Germany 28225 A 3885 3885
332 Germany 28226 T C 3885 3883 Tyr111Tyr
333 Germany 28227 C T 3885 3884 His112Tyr
334 Germany 28228 A G 3885 3879 His112Arg
335 Germany 28229 T 3885 3885
336 Germany 28230 G C 3885 3884 Asp113His
337 Germany 28231 A 3885 3885
338 Germany 28232 C T 3885 3884 Asp113Asp
339 Germany 28233 G 3885 3885
340 Germany 28234 T 3885 3885
341 Germany 28235 T 3885 3885
342 Germany 28236 C 3885 3885
343 Germany 28237 G 3885 3885
344 Germany 28238 T 3885 3885
345 Germany 28239 G 3885 3885
346 Germany 28240 T 3885 3885
347 Germany 28241 T 3885 3885
348 Germany 28242 G 3885 3885
349 Germany 28243 T 3885 3885
350 Germany 28244 T C 3885 3881 Val117Val
351 Germany 28245 T 3885 3885
352 Germany 28246 T 3885 3884
353 Germany 28247 A 3885 3884
354 Germany 28248 G 3885 3885
355 Germany 28249 A C 3885 3884 Asp119Ala
356 Germany 28250 T 3885 3885
357 Germany 28251 T 3882 3882
358 Germany 28252 T 3882 3882
359 Germany 28253 C T 3882 3839 Phe120Phe
360 Germany 28254 A C 3882 3869 Ile121Leu
361 Germany 28255 T 3882 3882
362 Germany 28256 C T,A 3882 3880 Ile121Ile-p.Ile121Ile
363 Germany 28257 T 3882 3882
364 Germany 28258 A 3882 3882
365 Germany 28259 A 3882 3882