National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12             1                          
I     30                                        
K     15                                        
L     30                               1        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36               1                        
W     3                   1                    
Y 1   21   1                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Georgia 27894 A 26 25
1 Georgia 27895 T 26 25
2 Georgia 27896 G 26 25
3 Georgia 27897 A 26 25
4 Georgia 27898 A 26 25
5 Georgia 27899 A 26 25
6 Georgia 27900 T 26 25
7 Georgia 27901 T 26 25
8 Georgia 27902 T 26 25
9 Georgia 27903 C 26 25
10 Georgia 27904 T 26 25
11 Georgia 27905 T 26 25
12 Georgia 27906 G 26 25
13 Georgia 27907 T 26 25
14 Georgia 27908 T 26 25
15 Georgia 27909 T 26 25
16 Georgia 27910 T 26 25
17 Georgia 27911 C 26 25
18 Georgia 27912 T 26 25
19 Georgia 27913 T 26 25
20 Georgia 27914 A 26 25
21 Georgia 27915 G 26 25
22 Georgia 27916 G 26 25
23 Georgia 27917 A 26 25
24 Georgia 27918 A 26 25
25 Georgia 27919 T 26 25
26 Georgia 27920 C 26 25
27 Georgia 27921 A 26 25
28 Georgia 27922 T 26 25
29 Georgia 27923 C 26 25
30 Georgia 27924 A 26 25
31 Georgia 27925 C 26 25
32 Georgia 27926 A 26 25
33 Georgia 27927 A 26 25
34 Georgia 27928 C 26 25
35 Georgia 27929 T 26 25
36 Georgia 27930 G 26 25
37 Georgia 27931 T 26 25
38 Georgia 27932 A 26 25
39 Georgia 27933 G 26 25
40 Georgia 27934 C 26 25
41 Georgia 27935 T 26 25
42 Georgia 27936 G 26 25
43 Georgia 27937 C 26 25
44 Georgia 27938 A 26 25
45 Georgia 27939 T 26 25
46 Georgia 27940 T 26 25
47 Georgia 27941 T 26 25
48 Georgia 27942 C 26 25
49 Georgia 27943 A 26 25
50 Georgia 27944 C T 26 24 His17His
51 Georgia 27945 C 26 25
52 Georgia 27946 A 26 25
53 Georgia 27947 A 26 25
54 Georgia 27948 G 26 25
55 Georgia 27949 A 26 25
56 Georgia 27950 A 26 25
57 Georgia 27951 T 26 25
58 Georgia 27952 G 26 25
59 Georgia 27953 T 26 25
60 Georgia 27954 A 26 25
61 Georgia 27955 G 26 25
62 Georgia 27956 T 26 25
63 Georgia 27957 T 26 25
64 Georgia 27958 T 26 25
65 Georgia 27959 A 26 25
66 Georgia 27960 C 26 25
67 Georgia 27961 A 26 25
68 Georgia 27962 G 26 25
69 Georgia 27963 T 26 25
70 Georgia 27964 C 26 25
71 Georgia 27965 A 26 25
72 Georgia 27966 T 26 25
73 Georgia 27967 G 26 25
74 Georgia 27968 T 26 25
75 Georgia 27969 A 26 25
76 Georgia 27970 C 26 25
77 Georgia 27971 T 26 25
78 Georgia 27972 C 26 25
79 Georgia 27973 A 26 25
80 Georgia 27974 A 26 25
81 Georgia 27975 C 26 25
82 Georgia 27976 A 26 25
83 Georgia 27977 T 26 25
84 Georgia 27978 C 26 25
85 Georgia 27979 A 26 25
86 Georgia 27980 A 26 25
87 Georgia 27981 C 26 25
88 Georgia 27982 C 26 25
89 Georgia 27983 A 26 25
90 Georgia 27984 T 26 25
91 Georgia 27985 A G 26 24 Tyr31Cys
92 Georgia 27986 T A 26 24 Tyr31*
93 Georgia 27987 G A 26 24 Val32Ile
94 Georgia 27988 T 26 25
95 Georgia 27989 A 26 25
96 Georgia 27990 G 26 25
97 Georgia 27991 T 26 25
98 Georgia 27992 T 26 25
99 Georgia 27993 G 26 25
100 Georgia 27994 A 26 25
101 Georgia 27995 T 26 25
102 Georgia 27996 G 26 25
103 Georgia 27997 A 26 25
104 Georgia 27998 C 26 25
105 Georgia 27999 C 26 25
106 Georgia 28000 C 26 25
107 Georgia 28001 G 26 25
108 Georgia 28002 T 26 25
109 Georgia 28003 G 26 25
110 Georgia 28004 T 26 25
111 Georgia 28005 C 26 25
112 Georgia 28006 C 26 25
113 Georgia 28007 T 26 25
114 Georgia 28008 A 26 25
115 Georgia 28009 T 26 25
116 Georgia 28010 T 26 25
117 Georgia 28011 C 26 25
118 Georgia 28012 A 26 25
119 Georgia 28013 C 26 25
120 Georgia 28014 T 26 25
121 Georgia 28015 T 26 25
122 Georgia 28016 C 26 25
123 Georgia 28017 T 26 25
124 Georgia 28018 A 26 25
125 Georgia 28019 T 26 25
126 Georgia 28020 T 26 25
127 Georgia 28021 C 26 25
128 Georgia 28022 T 26 25
129 Georgia 28023 A 26 25
130 Georgia 28024 A 26 25
131 Georgia 28025 A 26 25
132 Georgia 28026 T 26 25
133 Georgia 28027 G T 26 24 Trp45Leu
134 Georgia 28028 G 26 25
135 Georgia 28029 T 26 25
136 Georgia 28030 A 26 25
137 Georgia 28031 T 26 25
138 Georgia 28032 A 26 25
139 Georgia 28033 T 26 25
140 Georgia 28034 T 26 25
141 Georgia 28035 A 26 25
142 Georgia 28036 G 26 25
143 Georgia 28037 A 26 25
144 Georgia 28038 G 26 25
145 Georgia 28039 T 26 25
146 Georgia 28040 A 26 25
147 Georgia 28041 G 26 25
148 Georgia 28042 G 26 25
149 Georgia 28043 A 26 25
150 Georgia 28044 G 26 25
151 Georgia 28045 C 26 25
152 Georgia 28046 T 26 25
153 Georgia 28047 A 26 25
154 Georgia 28048 G 26 25
155 Georgia 28049 A 26 25
156 Georgia 28050 A 26 25
157 Georgia 28051 A 26 25
158 Georgia 28052 A 26 25
159 Georgia 28053 T 26 25
160 Georgia 28054 C 26 25
161 Georgia 28055 A 26 25
162 Georgia 28056 G 26 25
163 Georgia 28057 C 26 25
164 Georgia 28058 A 26 25
165 Georgia 28059 C 26 25
166 Georgia 28060 C 26 25
167 Georgia 28061 T 26 25
168 Georgia 28062 T 26 25
169 Georgia 28063 T 26 25
170 Georgia 28064 A 26 25
171 Georgia 28065 A 26 25
172 Georgia 28066 T 26 25
173 Georgia 28067 T 26 25
174 Georgia 28068 G 26 25
175 Georgia 28069 A 26 25
176 Georgia 28070 A 26 25
177 Georgia 28071 T 26 25
178 Georgia 28072 T 26 25
179 Georgia 28073 G 26 25
180 Georgia 28074 T 26 25
181 Georgia 28075 G 26 25
182 Georgia 28076 C 26 25
183 Georgia 28077 G 26 25
184 Georgia 28078 T 26 25
185 Georgia 28079 G 26 25
186 Georgia 28080 G 26 25
187 Georgia 28081 A 26 25
188 Georgia 28082 T 26 25
189 Georgia 28083 G 26 25
190 Georgia 28084 A 26 25
191 Georgia 28085 G 26 25
192 Georgia 28086 G 26 25
193 Georgia 28087 C 26 25
194 Georgia 28088 T 26 25
195 Georgia 28089 G 26 25
196 Georgia 28090 G 26 25
197 Georgia 28091 T 26 25
198 Georgia 28092 T 26 25
199 Georgia 28093 C 26 25
200 Georgia 28094 T 26 25
201 Georgia 28095 A 26 25
202 Georgia 28096 A 26 25
203 Georgia 28097 A 26 25
204 Georgia 28098 T 26 25
205 Georgia 28099 C 26 25
206 Georgia 28100 A 26 25
207 Georgia 28101 C 26 25
208 Georgia 28102 C 26 25
209 Georgia 28103 C 26 25
210 Georgia 28104 A 26 25
211 Georgia 28105 T 26 25
212 Georgia 28106 T 26 25
213 Georgia 28107 C 26 25
214 Georgia 28108 A 26 25
215 Georgia 28109 G 26 25
216 Georgia 28110 T 26 25
217 Georgia 28111 A 26 25
218 Georgia 28112 C 26 25
219 Georgia 28113 A 26 25
220 Georgia 28114 T 26 25
221 Georgia 28115 C 26 25
222 Georgia 28116 G 26 25
223 Georgia 28117 A 26 25
224 Georgia 28118 T 26 25
225 Georgia 28119 A 26 25
226 Georgia 28120 T 26 25
227 Georgia 28121 C 26 25
228 Georgia 28122 G 26 25
229 Georgia 28123 G 26 25
230 Georgia 28124 T 26 25
231 Georgia 28125 A 26 25
232 Georgia 28126 A 26 25
233 Georgia 28127 T 26 25
234 Georgia 28128 T 26 25
235 Georgia 28129 A 26 25
236 Georgia 28130 T 26 25
237 Georgia 28131 A 26 25
238 Georgia 28132 C 26 25
239 Georgia 28133 A 26 25
240 Georgia 28134 G 26 25
241 Georgia 28135 T 26 25
242 Georgia 28136 T 26 25
243 Georgia 28137 T 26 25
244 Georgia 28138 C 26 25
245 Georgia 28139 C 26 25
246 Georgia 28140 T 26 25
247 Georgia 28141 G 26 25
248 Georgia 28142 T 26 25
249 Georgia 28143 T 26 25
250 Georgia 28144 T C 26 24 Leu84Ser
251 Georgia 28145 A 26 25
252 Georgia 28146 C 26 25
253 Georgia 28147 C 26 25
254 Georgia 28148 T 26 25
255 Georgia 28149 T 26 25
256 Georgia 28150 T 26 25
257 Georgia 28151 T 26 25
258 Georgia 28152 A 26 25
259 Georgia 28153 C 26 25
260 Georgia 28154 A 26 25
261 Georgia 28155 A 26 25
262 Georgia 28156 T 26 25
263 Georgia 28157 T 26 25
264 Georgia 28158 A 26 25
265 Georgia 28159 A 26 25
266 Georgia 28160 T 26 25
267 Georgia 28161 T 26 25
268 Georgia 28162 G 26 25
269 Georgia 28163 C 26 25
270 Georgia 28164 C 26 25
271 Georgia 28165 A 26 25
272 Georgia 28166 G 26 25
273 Georgia 28167 G 26 25
274 Georgia 28168 A 26 25
275 Georgia 28169 A 26 25
276 Georgia 28170 C 26 25
277 Georgia 28171 C 26 25
278 Georgia 28172 T 26 25
279 Georgia 28173 A 26 25
280 Georgia 28174 A 26 25
281 Georgia 28175 A 26 25
282 Georgia 28176 T 26 25
283 Georgia 28177 T 26 25
284 Georgia 28178 G 26 25
285 Georgia 28179 G 26 25
286 Georgia 28180 G 26 25
287 Georgia 28181 T 26 25
288 Georgia 28182 A 26 25
289 Georgia 28183 G 26 25
290 Georgia 28184 T 26 25
291 Georgia 28185 C 26 25
292 Georgia 28186 T 26 25
293 Georgia 28187 T 26 25
294 Georgia 28188 G 26 25
295 Georgia 28189 T 26 25
296 Georgia 28190 A 26 25
297 Georgia 28191 G 26 25
298 Georgia 28192 T 26 25
299 Georgia 28193 G 26 25
300 Georgia 28194 C 26 25
301 Georgia 28195 G 26 25
302 Georgia 28196 T 26 25
303 Georgia 28197 T 26 25
304 Georgia 28198 G 26 25
305 Georgia 28199 T 26 25
306 Georgia 28200 T 26 25
307 Georgia 28201 C 26 25
308 Georgia 28202 G 26 25
309 Georgia 28203 T 26 25
310 Georgia 28204 T 26 25
311 Georgia 28205 C 26 25
312 Georgia 28206 T 26 25
313 Georgia 28207 A 26 25
314 Georgia 28208 T 26 25
315 Georgia 28209 G 26 25
316 Georgia 28210 A 26 25
317 Georgia 28211 A 26 25
318 Georgia 28212 G 26 25
319 Georgia 28213 A 26 25
320 Georgia 28214 C 26 25
321 Georgia 28215 T 26 25
322 Georgia 28216 T 26 25
323 Georgia 28217 T 26 25
324 Georgia 28218 T 26 25
325 Georgia 28219 T 26 25
326 Georgia 28220 A 26 25
327 Georgia 28221 G 26 25
328 Georgia 28222 A 26 25
329 Georgia 28223 G 26 25
330 Georgia 28224 T 26 25
331 Georgia 28225 A 26 25
332 Georgia 28226 T 26 25
333 Georgia 28227 C 26 25
334 Georgia 28228 A 26 25
335 Georgia 28229 T 26 25
336 Georgia 28230 G 26 25
337 Georgia 28231 A 26 25
338 Georgia 28232 C 26 25
339 Georgia 28233 G 26 25
340 Georgia 28234 T 26 25
341 Georgia 28235 T 26 25
342 Georgia 28236 C 26 25
343 Georgia 28237 G 26 25
344 Georgia 28238 T 26 25
345 Georgia 28239 G 26 25
346 Georgia 28240 T 26 25
347 Georgia 28241 T 26 25
348 Georgia 28242 G 26 25
349 Georgia 28243 T 26 25
350 Georgia 28244 T 26 25
351 Georgia 28245 T 26 25
352 Georgia 28246 T 26 25
353 Georgia 28247 A 26 25
354 Georgia 28248 G 26 25
355 Georgia 28249 A 26 25
356 Georgia 28250 T 26 25
357 Georgia 28251 T 26 25
358 Georgia 28252 T 26 25
359 Georgia 28253 C 26 25
360 Georgia 28254 A 26 25
361 Georgia 28255 T 26 25
362 Georgia 28256 C 26 25
363 Georgia 28257 T 26 25
364 Georgia 28258 A 26 25
365 Georgia 28259 A 26 25