National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15           1                   1   1    
C     21   1     1                              
D     22     1                                 1
E     18                           1            
F     24         2                              
G     15   1                                    
H     12             1                         1
I     30         1     1   1             1      
K     15                                        
L     30                               2        
M     3                                        
N     6                                        
P     21                         2              
Q     18             1   1                      
R     12   1               1         1          
S     27         1         1     1     2        
T     15               2                        
V     36               1   1                    
W     3                   1                    
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 France 27894 A 1598 1598
1 France 27895 T 1598 1598
2 France 27896 G 1599 1599
3 France 27897 A 1599 1599
4 France 27898 A 1599 1599
5 France 27899 A 1599 1599
6 France 27900 T 1599 1599
7 France 27901 T 1599 1599
8 France 27902 T 1599 1599
9 France 27903 C 1599 1599
10 France 27904 T 1599 1598
11 France 27905 T 1599 1599
12 France 27906 G 1599 1599
13 France 27907 T 1600 1600
14 France 27908 T 1600 1600
15 France 27909 T 1600 1599
16 France 27910 T 1600 1599
17 France 27911 C T 1600 1598 Phe6Phe
18 France 27912 T 1600 1600
19 France 27913 T 1600 1600
20 France 27914 A 1600 1600
21 France 27915 G 1600 1600
22 France 27916 G 1600 1600
23 France 27917 A 1600 1600
24 France 27918 A 1600 1600
25 France 27919 T 1600 1600
26 France 27920 C 1600 1600
27 France 27921 A 1600 1600
28 France 27922 T 1600 1600
29 France 27923 C T 1600 1593 Ile10Ile
30 France 27924 A 1600 1600
31 France 27925 C T 1600 1599 Thr11Ile
32 France 27926 A 1600 1600
33 France 27927 A 1600 1600
34 France 27928 C 1600 1600
35 France 27929 T 1600 1600
36 France 27930 G 1600 1600
37 France 27931 T 1600 1600
38 France 27932 A 1600 1600
39 France 27933 G 1600 1600
40 France 27934 C 1600 1600
41 France 27935 T 1600 1600
42 France 27936 G 1600 1600
43 France 27937 C 1600 1600
44 France 27938 A 1600 1600
45 France 27939 T 1600 1600
46 France 27940 T 1600 1600
47 France 27941 T 1600 1600
48 France 27942 C T 1600 1597 His17Tyr
49 France 27943 A 1600 1600
50 France 27944 C T 1600 1598 His17His
51 France 27945 C 1600 1600
52 France 27946 A 1600 1600
53 France 27947 A 1600 1600
54 France 27948 G 1600 1600
55 France 27949 A 1600 1600
56 France 27950 A 1600 1600
57 France 27951 T 1600 1600
58 France 27952 G 1600 1600
59 France 27953 T 1600 1600
60 France 27954 A 1600 1600
61 France 27955 G 1600 1600
62 France 27956 T 1600 1600
63 France 27957 T 1600 1600
64 France 27958 T C 1600 1599 Leu22Ser
65 France 27959 A 1600 1600
66 France 27960 C 1600 1600
67 France 27961 A 1600 1600
68 France 27962 G 1600 1600
69 France 27963 T 1600 1600
70 France 27964 C 1600 1600
71 France 27965 A 1600 1600
72 France 27966 T 1600 1600
73 France 27967 G 1600 1600
74 France 27968 T 1600 1600
75 France 27969 A 1600 1600
76 France 27970 C T 1600 1599 Thr26Ile
77 France 27971 T 1600 1600
78 France 27972 C A 1600 1599 Gln27Lys
79 France 27973 A 1600 1600
80 France 27974 A 1600 1600
81 France 27975 C 1600 1600
82 France 27976 A 1600 1600
83 France 27977 T 1601 1601
84 France 27978 C 1601 1601
85 France 27979 A 1601 1601
86 France 27980 A 1601 1601
87 France 27981 C 1601 1601
88 France 27982 C 1601 1601
89 France 27983 A 1601 1601
90 France 27984 T 1601 1601
91 France 27985 A 1601 1601
92 France 27986 T 1601 1601
93 France 27987 G 1601 1601
94 France 27988 T 1601 1601
95 France 27989 A 1601 1601
96 France 27990 G A 1601 1600 Val33Ile
97 France 27991 T 1601 1601
98 France 27992 T 1601 1601
99 France 27993 G 1601 1601
100 France 27994 A 1601 1601
101 France 27995 T 1601 1601
102 France 27996 G T 1601 1593 Asp35Tyr
103 France 27997 A 1601 1601
104 France 27998 C 1601 1601
105 France 27999 C 1601 1601
106 France 28000 C 1601 1601
107 France 28001 G T,A 1601 1596 Pro36Pro-p.Pro36Pro
108 France 28002 T 1601 1601
109 France 28003 G 1601 1601
110 France 28004 T 1601 1601
111 France 28005 C 1601 1601
112 France 28006 C 1601 1601
113 France 28007 T 1601 1601
114 France 28008 A 1601 1601
115 France 28009 T 1601 1601
116 France 28010 T 1601 1601
117 France 28011 C 1601 1601
118 France 28012 A 1601 1601
119 France 28013 C 1601 1601
120 France 28014 T 1601 1601
121 France 28015 T 1601 1601
122 France 28016 C 1601 1601
123 France 28017 T 1601 1601
124 France 28018 A 1601 1601
125 France 28019 T 1601 1601
126 France 28020 T 1601 1601
127 France 28021 C 1601 1601
128 France 28022 T 1601 1601
129 France 28023 A 1601 1601
130 France 28024 A 1601 1601
131 France 28025 A 1601 1601
132 France 28026 T 1601 1601
133 France 28027 G T 1601 1596 Trp45Leu
134 France 28028 G 1601 1601
135 France 28029 T 1601 1601
136 France 28030 A 1601 1601
137 France 28031 T 1601 1601
138 France 28032 A 1601 1601
139 France 28033 T 1601 1601
140 France 28034 T 1601 1601
141 France 28035 A 1601 1601
142 France 28036 G 1601 1601
143 France 28037 A G 1601 1600 Arg48Arg
144 France 28038 G 1601 1601
145 France 28039 T 1601 1601
146 France 28040 A 1601 1601
147 France 28041 G 1601 1601
148 France 28042 G 1601 1601
149 France 28043 A 1601 1601
150 France 28044 G 1601 1601
151 France 28045 C 1601 1601
152 France 28046 T 1601 1601
153 France 28047 A 1601 1601
154 France 28048 G 1601 1601
155 France 28049 A 1601 1601
156 France 28050 A 1601 1601
157 France 28051 A 1601 1601
158 France 28052 A 1601 1601
159 France 28053 T 1601 1601
160 France 28054 C 1601 1601
161 France 28055 A 1601 1601
162 France 28056 G 1601 1601
163 France 28057 C 1601 1601
164 France 28058 A 1601 1601
165 France 28059 C 1601 1601
166 France 28060 C 1601 1601
167 France 28061 T 1601 1601
168 France 28062 T 1601 1601
169 France 28063 T 1601 1601
170 France 28064 A 1601 1601
171 France 28065 A 1602 1602
172 France 28066 T 1602 1602
173 France 28067 T 1602 1602
174 France 28068 G 1602 1602
175 France 28069 A 1602 1602
176 France 28070 A 1602 1602
177 France 28071 T 1602 1602
178 France 28072 T 1602 1602
179 France 28073 G 1602 1602
180 France 28074 T 1602 1602
181 France 28075 G 1602 1602
182 France 28076 C T 1602 1601 Cys61Cys
183 France 28077 G T 1602 1599 Val62Leu
184 France 28078 T 1602 1602
185 France 28079 G 1602 1602
186 France 28080 G 1602 1602
187 France 28081 A 1602 1602
188 France 28082 T 1602 1602
189 France 28083 G C 1602 1601 Glu64Gln
190 France 28084 A 1602 1602
191 France 28085 G 1602 1602
192 France 28086 G T 1602 1587 Ala65Ser
193 France 28087 C T,G 1602 1599 Ala65Val-p.Ala65Gly
194 France 28088 T 1602 1602
195 France 28089 G 1603 1603
196 France 28090 G 1603 1603
197 France 28091 T 1603 1603
198 France 28092 T 1603 1603
199 France 28093 C T 1603 1602 Ser67Phe
200 France 28094 T 1603 1603
201 France 28095 A 1603 1603
202 France 28096 A 1603 1603
203 France 28097 A 1603 1603
204 France 28098 T C 1603 1602 Ser69Pro
205 France 28099 C 1603 1603
206 France 28100 A 1603 1603
207 France 28101 C 1603 1603
208 France 28102 C 1603 1603
209 France 28103 C 1603 1603
210 France 28104 A 1603 1603
211 France 28105 T C 1603 1602 Ile71Thr
212 France 28106 T 1603 1603
213 France 28107 C 1603 1603
214 France 28108 A 1603 1603
215 France 28109 G T 1603 1602 Gln72His
216 France 28110 T 1603 1603
217 France 28111 A 1603 1603
218 France 28112 C 1603 1603
219 France 28113 A 1603 1603
220 France 28114 T 1603 1603
221 France 28115 C 1603 1603
222 France 28116 G 1603 1603
223 France 28117 A 1603 1603
224 France 28118 T 1603 1603
225 France 28119 A 1603 1603
226 France 28120 T 1603 1603
227 France 28121 C 1603 1603
228 France 28122 G T 1603 1602 Gly77Cys
229 France 28123 G 1603 1603
230 France 28124 T 1603 1603
231 France 28125 A 1603 1603
232 France 28126 A 1603 1603
233 France 28127 T 1603 1603
234 France 28128 T 1603 1603
235 France 28129 A 1603 1603
236 France 28130 T 1603 1603
237 France 28131 A 1603 1603
238 France 28132 C 1603 1603
239 France 28133 A 1603 1603
240 France 28134 G 1603 1603
241 France 28135 T 1603 1603
242 France 28136 T 1603 1603
243 France 28137 T 1603 1603
244 France 28138 C 1603 1603
245 France 28139 C T 1603 1602 Ser82Ser
246 France 28140 T 1603 1603
247 France 28141 G 1603 1603
248 France 28142 T 1603 1603
249 France 28143 T 1603 1603
250 France 28144 T C 1603 1598 Leu84Ser
251 France 28145 A 1603 1603
252 France 28146 C 1603 1603
253 France 28147 C 1603 1603
254 France 28148 T 1603 1603
255 France 28149 T 1603 1603
256 France 28150 T 1603 1603
257 France 28151 T 1603 1603
258 France 28152 A 1603 1603
259 France 28153 C 1603 1603
260 France 28154 A 1603 1603
261 France 28155 A 1603 1603
262 France 28156 T 1603 1603
263 France 28157 T 1603 1603
264 France 28158 A 1603 1603
265 France 28159 A 1603 1603
266 France 28160 T 1603 1603
267 France 28161 T 1603 1603
268 France 28162 G 1603 1603
269 France 28163 C 1603 1603
270 France 28164 C 1603 1603
271 France 28165 A 1603 1603
272 France 28166 G 1602 1602
273 France 28167 G 1602 1602
274 France 28168 A 1602 1602
275 France 28169 A 1602 1602
276 France 28170 C 1602 1602
277 France 28171 C 1602 1602
278 France 28172 T 1602 1602
279 France 28173 A 1602 1602
280 France 28174 A 1602 1602
281 France 28175 A 1602 1602
282 France 28176 T 1602 1602
283 France 28177 T 1602 1602
284 France 28178 G 1602 1602
285 France 28179 G 1602 1602
286 France 28180 G 1602 1602
287 France 28181 T 1602 1602
288 France 28182 A 1602 1602
289 France 28183 G 1602 1602
290 France 28184 T 1602 1602
291 France 28185 C 1602 1602
292 France 28186 T 1602 1602
293 France 28187 T 1602 1602
294 France 28188 G 1602 1602
295 France 28189 T 1602 1602
296 France 28190 A 1602 1602
297 France 28191 G 1602 1602
298 France 28192 T 1602 1602
299 France 28193 G 1602 1602
300 France 28194 C 1602 1602
301 France 28195 G T 1602 1601 Arg101Leu
302 France 28196 T 1602 1602
303 France 28197 T 1602 1602
304 France 28198 G T 1602 1566 Cys102Phe
305 France 28199 T 1602 1602
306 France 28200 T 1602 1602
307 France 28201 C T 1602 1601 Ser103Leu
308 France 28202 G A 1602 1599 Ser103Ser
309 France 28203 T 1602 1602
310 France 28204 T 1602 1602
311 France 28205 C 1602 1602
312 France 28206 T 1602 1602
313 France 28207 A 1602 1602
314 France 28208 T 1602 1602
315 France 28209 G 1602 1602
316 France 28210 A 1602 1602
317 France 28211 A 1602 1602
318 France 28212 G 1602 1602
319 France 28213 A 1602 1602
320 France 28214 C 1602 1602
321 France 28215 T 1602 1602
322 France 28216 T 1602 1602
323 France 28217 T 1602 1602
324 France 28218 T 1602 1602
325 France 28219 T 1602 1602
326 France 28220 A 1602 1602
327 France 28221 G 1602 1602
328 France 28222 A 1602 1602
329 France 28223 G 1602 1602
330 France 28224 T 1602 1602
331 France 28225 A 1602 1602
332 France 28226 T 1602 1602
333 France 28227 C 1602 1602
334 France 28228 A 1602 1602
335 France 28229 T 1602 1602
336 France 28230 G 1602 1602
337 France 28231 A 1602 1602
338 France 28232 C T 1602 1601 Asp113Asp
339 France 28233 G 1602 1602
340 France 28234 T 1602 1602
341 France 28235 T 1602 1602
342 France 28236 C T 1602 1601 Arg115Cys
343 France 28237 G 1602 1602
344 France 28238 T 1602 1602
345 France 28239 G 1602 1602
346 France 28240 T 1602 1602
347 France 28241 T 1602 1602
348 France 28242 G 1602 1602
349 France 28243 T 1602 1602
350 France 28244 T 1602 1602
351 France 28245 T 1602 1602
352 France 28246 T 1602 1602
353 France 28247 A 1602 1602
354 France 28248 G 1602 1602
355 France 28249 A 1602 1602
356 France 28250 T 1602 1602
357 France 28251 T 1599 1599
358 France 28252 T 1599 1599
359 France 28253 C T 1599 1572 Phe120Phe
360 France 28254 A T,C 1599 1597 Ile121Phe-p.Ile121Leu
361 France 28255 T 1599 1599
362 France 28256 C 1599 1599
363 France 28257 T 1599 1599
364 France 28258 A 1599 1599
365 France 28259 A 1599 1599