National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                               1        
C     21   1     1                              
D     22                                        
E 1   18                                        
F     24         1                         1    
G     15     1                       1          
H     12     1       1                         1
I     30               1   1           1 1      
K 1   15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                               1        
Q 1   18                                        
R     12               1                        
S     27                                        
T     15                 1               1      
V     36               1   1                    
W     3                                        
Y     21   1         1                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Finland 27894 A 994 994
1 Finland 27895 T 994 994
2 Finland 27896 G 994 994
3 Finland 27897 A 994 994
4 Finland 27898 A 994 994
5 Finland 27899 A 994 994
6 Finland 27900 T 994 994
7 Finland 27901 T 994 994
8 Finland 27902 T 994 994
9 Finland 27903 C 994 994
10 Finland 27904 T 994 994
11 Finland 27905 T 994 994
12 Finland 27906 G 994 994
13 Finland 27907 T 994 994
14 Finland 27908 T 994 994
15 Finland 27909 T 994 994
16 Finland 27910 T 994 994
17 Finland 27911 C 994 994
18 Finland 27912 T 994 994
19 Finland 27913 T 994 994
20 Finland 27914 A 994 994
21 Finland 27915 G A 994 993 Gly8Arg
22 Finland 27916 G 994 994
23 Finland 27917 A 994 993
24 Finland 27918 A 994 993
25 Finland 27919 T C 994 992 Ile9Thr
26 Finland 27920 C 994 993
27 Finland 27921 A 994 993
28 Finland 27922 T 994 993
29 Finland 27923 C 994 993
30 Finland 27924 A 994 993
31 Finland 27925 C A 994 992 Thr11Lys
32 Finland 27926 A 994 993
33 Finland 27927 A 994 993
34 Finland 27928 C 994 993
35 Finland 27929 T 994 993
36 Finland 27930 G 994 993
37 Finland 27931 T 994 993
38 Finland 27932 A 994 993
39 Finland 27933 G 994 993
40 Finland 27934 C 994 994
41 Finland 27935 T 994 994
42 Finland 27936 G 994 994
43 Finland 27937 C 994 994
44 Finland 27938 A 994 994
45 Finland 27939 T 994 994
46 Finland 27940 T 994 994
47 Finland 27941 T 994 994
48 Finland 27942 C T 994 993 His17Tyr
49 Finland 27943 A 994 994
50 Finland 27944 C T 994 992 His17His
51 Finland 27945 C 994 994
52 Finland 27946 A 994 994
53 Finland 27947 A 994 994
54 Finland 27948 G 994 994
55 Finland 27949 A 994 994
56 Finland 27950 A 994 994
57 Finland 27951 T 994 994
58 Finland 27952 G 994 994
59 Finland 27953 T 994 994
60 Finland 27954 A 994 994
61 Finland 27955 G 994 994
62 Finland 27956 T 994 994
63 Finland 27957 T 994 994
64 Finland 27958 T 994 994
65 Finland 27959 A 994 994
66 Finland 27960 C 994 994
67 Finland 27961 A 994 994
68 Finland 27962 G 994 994
69 Finland 27963 T 994 994
70 Finland 27964 C 994 994
71 Finland 27965 A 994 994
72 Finland 27966 T 994 994
73 Finland 27967 G 994 994
74 Finland 27968 T 994 994
75 Finland 27969 A 994 994
76 Finland 27970 C 994 994
77 Finland 27971 T 994 994
78 Finland 27972 C T 994 953 Gln27*
79 Finland 27973 A 994 994
80 Finland 27974 A 994 994
81 Finland 27975 C 994 994
82 Finland 27976 A 994 994
83 Finland 27977 T 994 994
84 Finland 27978 C 994 994
85 Finland 27979 A 994 994
86 Finland 27980 A 994 994
87 Finland 27981 C 994 994
88 Finland 27982 C 994 994
89 Finland 27983 A 994 994
90 Finland 27984 T 994 994
91 Finland 27985 A 994 994
92 Finland 27986 T 994 994
93 Finland 27987 G A 994 993 Val32Ile
94 Finland 27988 T 994 994
95 Finland 27989 A 994 994
96 Finland 27990 G 994 994
97 Finland 27991 T 994 994
98 Finland 27992 T 994 994
99 Finland 27993 G 994 994
100 Finland 27994 A 994 994
101 Finland 27995 T 994 994
102 Finland 27996 G 994 994
103 Finland 27997 A 994 994
104 Finland 27998 C 994 994
105 Finland 27999 C 994 994
106 Finland 28000 C 994 994
107 Finland 28001 G 994 994
108 Finland 28002 T 994 994
109 Finland 28003 G T 994 987 Cys37Phe
110 Finland 28004 T 994 994
111 Finland 28005 C T 994 993 Pro38Ser
112 Finland 28006 C 994 994
113 Finland 28007 T 994 994
114 Finland 28008 A 994 994
115 Finland 28009 T G 994 977 Ile39Ser
116 Finland 28010 T C 994 991 Ile39Ile
117 Finland 28011 C G 994 993 His40Asp
118 Finland 28012 A 994 994
119 Finland 28013 C 994 994
120 Finland 28014 T 994 994
121 Finland 28015 T 994 994
122 Finland 28016 C 994 994
123 Finland 28017 T 994 994
124 Finland 28018 A 994 994
125 Finland 28019 T 994 994
126 Finland 28020 T 994 994
127 Finland 28021 C 994 994
128 Finland 28022 T 994 994
129 Finland 28023 A 994 994
130 Finland 28024 A 993 993
131 Finland 28025 A 993 993
132 Finland 28026 T 993 993
133 Finland 28027 G 993 993
134 Finland 28028 G 993 993
135 Finland 28029 T 993 993
136 Finland 28030 A 993 993
137 Finland 28031 T 993 993
138 Finland 28032 A 993 993
139 Finland 28033 T 993 993
140 Finland 28034 T 993 993
141 Finland 28035 A 993 993
142 Finland 28036 G 993 993
143 Finland 28037 A 993 993
144 Finland 28038 G 993 993
145 Finland 28039 T 993 993
146 Finland 28040 A 993 993
147 Finland 28041 G 993 993
148 Finland 28042 G 993 993
149 Finland 28043 A 993 993
150 Finland 28044 G 993 993
151 Finland 28045 C 993 993
152 Finland 28046 T 993 993
153 Finland 28047 A 993 993
154 Finland 28048 G T 993 953 Arg52Ile
155 Finland 28049 A 993 993
156 Finland 28050 A 993 993
157 Finland 28051 A 993 993
158 Finland 28052 A 993 993
159 Finland 28053 T 993 993
160 Finland 28054 C 993 993
161 Finland 28055 A 993 993
162 Finland 28056 G 993 993
163 Finland 28057 C 993 993
164 Finland 28058 A 993 993
165 Finland 28059 C 993 993
166 Finland 28060 C 993 993
167 Finland 28061 T 993 993
168 Finland 28062 T 993 993
169 Finland 28063 T 993 993
170 Finland 28064 A 993 993
171 Finland 28065 A 993 993
172 Finland 28066 T 993 993
173 Finland 28067 T 993 993
174 Finland 28068 G 993 993
175 Finland 28069 A 993 993
176 Finland 28070 A 993 993
177 Finland 28071 T 993 993
178 Finland 28072 T 993 993
179 Finland 28073 G 993 993
180 Finland 28074 T 993 993
181 Finland 28075 G 993 993
182 Finland 28076 C 993 993
183 Finland 28077 G T 993 988 Val62Leu
184 Finland 28078 T 993 993
185 Finland 28079 G 993 993
186 Finland 28080 G 993 993
187 Finland 28081 A 993 993
188 Finland 28082 T 993 993
189 Finland 28083 G T 993 992 Glu64*
190 Finland 28084 A 993 993
191 Finland 28085 G 993 993
192 Finland 28086 G T 993 992 Ala65Ser
193 Finland 28087 C 993 993
194 Finland 28088 T 993 993
195 Finland 28089 G 993 993
196 Finland 28090 G A 993 991 Gly66Asp
197 Finland 28091 T 993 992
198 Finland 28092 T 993 992
199 Finland 28093 C 993 992
200 Finland 28094 T 993 992
201 Finland 28095 A T 993 987 Lys68*
202 Finland 28096 A 993 993
203 Finland 28097 A 993 993
204 Finland 28098 T 993 993
205 Finland 28099 C 993 993
206 Finland 28100 A 993 993
207 Finland 28101 C 993 993
208 Finland 28102 C 993 993
209 Finland 28103 C 993 993
210 Finland 28104 A 993 993
211 Finland 28105 T 993 993
212 Finland 28106 T 993 993
213 Finland 28107 C 993 993
214 Finland 28108 A 993 993
215 Finland 28109 G 993 993
216 Finland 28110 T C 993 992 Tyr73His
217 Finland 28111 A G 993 953 Tyr73Cys
218 Finland 28112 C 993 993
219 Finland 28113 A 993 993
220 Finland 28114 T 993 993
221 Finland 28115 C 993 993
222 Finland 28116 G 993 993
223 Finland 28117 A 993 993
224 Finland 28118 T 993 993
225 Finland 28119 A 993 993
226 Finland 28120 T 993 993
227 Finland 28121 C 993 993
228 Finland 28122 G 993 993
229 Finland 28123 G 993 993
230 Finland 28124 T 993 993
231 Finland 28125 A 993 993
232 Finland 28126 A 993 993
233 Finland 28127 T 993 993
234 Finland 28128 T 993 993
235 Finland 28129 A 993 993
236 Finland 28130 T 993 993
237 Finland 28131 A 993 993
238 Finland 28132 C 993 993
239 Finland 28133 A T 993 989 Thr80Thr
240 Finland 28134 G 993 992
241 Finland 28135 T 993 992
242 Finland 28136 T 993 992
243 Finland 28137 T 993 992
244 Finland 28138 C 993 992
245 Finland 28139 C 993 992
246 Finland 28140 T 993 992
247 Finland 28141 G 993 992
248 Finland 28142 T 993 992
249 Finland 28143 T 993 992
250 Finland 28144 T 993 992
251 Finland 28145 A 993 992
252 Finland 28146 C 993 993
253 Finland 28147 C 993 993
254 Finland 28148 T 993 993
255 Finland 28149 T 993 993
256 Finland 28150 T 993 993
257 Finland 28151 T 993 993
258 Finland 28152 A 993 993
259 Finland 28153 C 993 993
260 Finland 28154 A 993 993
261 Finland 28155 A 993 993
262 Finland 28156 T 993 993
263 Finland 28157 T 993 993
264 Finland 28158 A 993 993
265 Finland 28159 A 993 993
266 Finland 28160 T 993 993
267 Finland 28161 T 993 993
268 Finland 28162 G 993 993
269 Finland 28163 C T 993 992 Cys90Cys
270 Finland 28164 C 993 993
271 Finland 28165 A 993 993
272 Finland 28166 G 993 993
273 Finland 28167 G 993 993
274 Finland 28168 A 993 993
275 Finland 28169 A 993 993
276 Finland 28170 C 993 993
277 Finland 28171 C 993 993
278 Finland 28172 T 993 993
279 Finland 28173 A 993 993
280 Finland 28174 A 993 993
281 Finland 28175 A 993 993
282 Finland 28176 T 993 993
283 Finland 28177 T 993 993
284 Finland 28178 G 993 993
285 Finland 28179 G 993 993
286 Finland 28180 G 993 993
287 Finland 28181 T 993 993
288 Finland 28182 A 993 993
289 Finland 28183 G 993 993
290 Finland 28184 T 993 993
291 Finland 28185 C 993 993
292 Finland 28186 T 993 993
293 Finland 28187 T 993 993
294 Finland 28188 G 993 993
295 Finland 28189 T 993 993
296 Finland 28190 A 993 993
297 Finland 28191 G 993 993
298 Finland 28192 T 993 993
299 Finland 28193 G 993 993
300 Finland 28194 C 993 993
301 Finland 28195 G 993 993
302 Finland 28196 T 993 993
303 Finland 28197 T 993 993
304 Finland 28198 G 993 993
305 Finland 28199 T 993 993
306 Finland 28200 T 993 993
307 Finland 28201 C 993 993
308 Finland 28202 G 993 993
309 Finland 28203 T 993 993
310 Finland 28204 T 993 993
311 Finland 28205 C 994 994
312 Finland 28206 T 994 994
313 Finland 28207 A 994 994
314 Finland 28208 T 994 994
315 Finland 28209 G 994 994
316 Finland 28210 A 994 994
317 Finland 28211 A 994 994
318 Finland 28212 G 994 994
319 Finland 28213 A 994 994
320 Finland 28214 C 994 994
321 Finland 28215 T 994 994
322 Finland 28216 T 994 994
323 Finland 28217 T 994 994
324 Finland 28218 T 994 994
325 Finland 28219 T 994 994
326 Finland 28220 A 994 994
327 Finland 28221 G 994 994
328 Finland 28222 A 994 994
329 Finland 28223 G 994 994
330 Finland 28224 T 994 994
331 Finland 28225 A 994 994
332 Finland 28226 T 994 994
333 Finland 28227 C 994 994
334 Finland 28228 A 994 994
335 Finland 28229 T 994 994
336 Finland 28230 G 994 994
337 Finland 28231 A 994 994
338 Finland 28232 C 994 994
339 Finland 28233 G 994 994
340 Finland 28234 T 994 994
341 Finland 28235 T 994 994
342 Finland 28236 C 994 994
343 Finland 28237 G 994 994
344 Finland 28238 T 994 994
345 Finland 28239 G 994 994
346 Finland 28240 T 994 994
347 Finland 28241 T 994 994
348 Finland 28242 G 994 994
349 Finland 28243 T 994 994
350 Finland 28244 T 994 994
351 Finland 28245 T 994 994
352 Finland 28246 T 994 994
353 Finland 28247 A 994 994
354 Finland 28248 G 994 994
355 Finland 28249 A 994 994
356 Finland 28250 T 994 994
357 Finland 28251 T G 993 991 Phe120Val
358 Finland 28252 T 993 993
359 Finland 28253 C T 993 933 Phe120Phe
360 Finland 28254 A C 993 992 Ile121Leu
361 Finland 28255 T 993 993
362 Finland 28256 C 993 993
363 Finland 28257 T 993 993
364 Finland 28258 A 993 993
365 Finland 28259 A 993 993