National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                   3    
C     21                                        
D     22                                        
E     18                                        
F     24         2         1                    
G     15                                        
H     12                                        
I     30                               1 1      
K     15                 2                      
L     30                   1           1        
M     3                                        
N     6                                        
P     21                   1                    
Q     18                                        
R     12                   1                    
S     27                                        
T     15               3                        
V     36               1   2               1    
W     3                   1                    
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 England 27894 A 1573 1573
1 England 27895 T 1573 1573
2 England 27896 G 1573 1573
3 England 27897 A 1574 1574
4 England 27898 A 1574 1574
5 England 27899 A 1574 1574
6 England 27900 T 1574 1574
7 England 27901 T 1574 1574
8 England 27902 T 1575 1575
9 England 27903 C 1575 1575
10 England 27904 T 1575 1575
11 England 27905 T 1575 1575
12 England 27906 G 1575 1575
13 England 27907 T 1575 1575
14 England 27908 T 1575 1574
15 England 27909 T 1575 1575
16 England 27910 T 1576 1576
17 England 27911 C T 1576 1574 Phe6Phe
18 England 27912 T 1576 1576
19 England 27913 T 1576 1575
20 England 27914 A 1576 1576
21 England 27915 G 1576 1576
22 England 27916 G 1576 1575
23 England 27917 A 1576 1575
24 England 27918 A 1576 1575
25 England 27919 T 1576 1576
26 England 27920 C 1576 1576
27 England 27921 A 1576 1576
28 England 27922 T G 1576 1572 Ile10Ser
29 England 27923 C 1576 1576
30 England 27924 A 1576 1576
31 England 27925 C T 1576 1574 Thr11Ile
32 England 27926 A 1576 1576
33 England 27927 A 1576 1576
34 England 27928 C T 1576 1575 Thr12Ile
35 England 27929 T 1576 1576
36 England 27930 G 1576 1576
37 England 27931 T 1576 1576
38 England 27932 A 1576 1576
39 England 27933 G 1576 1576
40 England 27934 C 1576 1576
41 England 27935 T 1576 1576
42 England 27936 G 1576 1575
43 England 27937 C 1576 1576
44 England 27938 A 1576 1576
45 England 27939 T 1576 1576
46 England 27940 T 1576 1576
47 England 27941 T 1576 1576
48 England 27942 C 1576 1576
49 England 27943 A 1576 1576
50 England 27944 C 1576 1576
51 England 27945 C 1576 1576
52 England 27946 A 1576 1576
53 England 27947 A 1576 1576
54 England 27948 G 1576 1576
55 England 27949 A 1576 1576
56 England 27950 A 1576 1576
57 England 27951 T 1576 1576
58 England 27952 G 1576 1576
59 England 27953 T 1576 1576
60 England 27954 A 1576 1576
61 England 27955 G 1576 1576
62 England 27956 T 1576 1576
63 England 27957 T 1576 1576
64 England 27958 T 1576 1576
65 England 27959 A 1576 1576
66 England 27960 C 1576 1576
67 England 27961 A 1576 1576
68 England 27962 G 1576 1576
69 England 27963 T 1576 1576
70 England 27964 C 1576 1576
71 England 27965 A 1576 1576
72 England 27966 T 1576 1576
73 England 27967 G 1576 1576
74 England 27968 T 1576 1576
75 England 27969 A 1576 1575
76 England 27970 C 1576 1576
77 England 27971 T 1576 1576
78 England 27972 C 1576 1576
79 England 27973 A 1576 1576
80 England 27974 A 1576 1576
81 England 27975 C 1576 1576
82 England 27976 A 1576 1576
83 England 27977 T 1576 1576
84 England 27978 C 1576 1576
85 England 27979 A 1576 1576
86 England 27980 A 1576 1576
87 England 27981 C 1576 1576
88 England 27982 C 1576 1576
89 England 27983 A 1576 1576
90 England 27984 T 1576 1576
91 England 27985 A 1576 1576
92 England 27986 T 1576 1576
93 England 27987 G T 1576 1575 Val32Leu
94 England 27988 T 1576 1576
95 England 27989 A 1576 1576
96 England 27990 G 1576 1576
97 England 27991 T 1576 1576
98 England 27992 T 1576 1576
99 England 27993 G 1576 1576
100 England 27994 A 1576 1576
101 England 27995 T 1576 1576
102 England 27996 G 1576 1576
103 England 27997 A 1576 1576
104 England 27998 C 1576 1576
105 England 27999 C 1576 1576
106 England 28000 C T 1576 1575 Pro36Leu
107 England 28001 G 1576 1576
108 England 28002 T 1576 1576
109 England 28003 G 1576 1576
110 England 28004 T 1576 1576
111 England 28005 C 1576 1576
112 England 28006 C 1576 1576
113 England 28007 T 1576 1576
114 England 28008 A 1576 1576
115 England 28009 T 1576 1576
116 England 28010 T 1576 1576
117 England 28011 C 1576 1576
118 England 28012 A 1576 1575
119 England 28013 C 1576 1576
120 England 28014 T 1576 1576
121 England 28015 T 1576 1576
122 England 28016 C 1576 1576
123 England 28017 T 1576 1576
124 England 28018 A 1576 1576
125 England 28019 T 1576 1576
126 England 28020 T 1576 1576
127 England 28021 C 1576 1576
128 England 28022 T 1576 1576
129 England 28023 A 1576 1576
130 England 28024 A 1576 1576
131 England 28025 A G 1576 1575 Lys44Lys
132 England 28026 T 1576 1576
133 England 28027 G T 1576 1575 Trp45Leu
134 England 28028 G 1576 1576
135 England 28029 T 1576 1576
136 England 28030 A 1576 1576
137 England 28031 T 1576 1576
138 England 28032 A 1576 1576
139 England 28033 T 1576 1576
140 England 28034 T 1576 1576
141 England 28035 A 1576 1576
142 England 28036 G 1576 1576
143 England 28037 A 1576 1576
144 England 28038 G 1576 1576
145 England 28039 T 1576 1576
146 England 28040 A 1576 1576
147 England 28041 G 1576 1576
148 England 28042 G 1576 1576
149 England 28043 A 1576 1576
150 England 28044 G 1576 1576
151 England 28045 C T 1576 1575 Ala51Val
152 England 28046 T 1576 1576
153 England 28047 A 1576 1576
154 England 28048 G 1576 1576
155 England 28049 A 1576 1576
156 England 28050 A 1576 1576
157 England 28051 A 1576 1576
158 England 28052 A 1576 1575
159 England 28053 T 1576 1576
160 England 28054 C 1576 1576
161 England 28055 A 1576 1576
162 England 28056 G 1576 1576
163 England 28057 C T 1576 1575 Ala55Val
164 England 28058 A 1576 1576
165 England 28059 C 1576 1576
166 England 28060 C 1576 1576
167 England 28061 T 1576 1576
168 England 28062 T 1576 1576
169 England 28063 T 1576 1576
170 England 28064 A 1576 1576
171 England 28065 A 1576 1576
172 England 28066 T C 1576 1575 Ile58Thr
173 England 28067 T 1576 1576
174 England 28068 G 1576 1576
175 England 28069 A 1576 1576
176 England 28070 A 1576 1576
177 England 28071 T 1576 1576
178 England 28072 T 1576 1576
179 England 28073 G 1576 1576
180 England 28074 T 1575 1575
181 England 28075 G 1575 1575
182 England 28076 C 1575 1575
183 England 28077 G T 1575 1566 Val62Leu
184 England 28078 T 1575 1575
185 England 28079 G T 1575 1574 Val62Val
186 England 28080 G 1575 1575
187 England 28081 A 1575 1575
188 England 28082 T 1575 1575
189 England 28083 G 1575 1575
190 England 28084 A 1575 1575
191 England 28085 G 1575 1575
192 England 28086 G 1575 1575
193 England 28087 C T 1575 1574 Ala65Val
194 England 28088 T 1575 1574
195 England 28089 G 1578 1578
196 England 28090 G 1578 1578
197 England 28091 T 1578 1578
198 England 28092 T 1578 1578
199 England 28093 C 1578 1577
200 England 28094 T 1578 1578
201 England 28095 A 1578 1578
202 England 28096 A 1578 1578
203 England 28097 A 1578 1578
204 England 28098 T 1578 1578
205 England 28099 C 1578 1578
206 England 28100 A 1578 1578
207 England 28101 C 1578 1578
208 England 28102 C 1578 1578
209 England 28103 C 1578 1578
210 England 28104 A 1578 1578
211 England 28105 T 1578 1578
212 England 28106 T 1578 1578
213 England 28107 C 1578 1578
214 England 28108 A 1578 1578
215 England 28109 G 1578 1578
216 England 28110 T 1578 1578
217 England 28111 A 1578 1578
218 England 28112 C 1578 1578
219 England 28113 A 1578 1578
220 England 28114 T 1578 1577
221 England 28115 C 1578 1578
222 England 28116 G 1578 1578
223 England 28117 A 1578 1578
224 England 28118 T 1578 1578
225 England 28119 A 1578 1578
226 England 28120 T 1578 1578
227 England 28121 C 1578 1578
228 England 28122 G 1578 1578
229 England 28123 G 1578 1578
230 England 28124 T 1578 1578
231 England 28125 A 1578 1578
232 England 28126 A 1578 1578
233 England 28127 T 1578 1578
234 England 28128 T 1578 1578
235 England 28129 A 1578 1578
236 England 28130 T 1578 1578
237 England 28131 A 1578 1578
238 England 28132 C 1578 1578
239 England 28133 A 1578 1578
240 England 28134 G 1579 1579
241 England 28135 T 1579 1579
242 England 28136 T 1579 1579
243 England 28137 T 1579 1579
244 England 28138 C 1579 1579
245 England 28139 C 1579 1579
246 England 28140 T 1579 1579
247 England 28141 G 1579 1579
248 England 28142 T 1579 1579
249 England 28143 T 1579 1579
250 England 28144 T C 1579 1572 Leu84Ser
251 England 28145 A 1579 1579
252 England 28146 C 1579 1579
253 England 28147 C 1579 1579
254 England 28148 T 1579 1579
255 England 28149 T 1579 1579
256 England 28150 T 1579 1579
257 England 28151 T 1579 1579
258 England 28152 A 1579 1579
259 England 28153 C T 1579 1577 Thr87Ile
260 England 28154 A 1579 1579
261 England 28155 A 1579 1579
262 England 28156 T 1579 1579
263 England 28157 T 1579 1579
264 England 28158 A 1579 1578
265 England 28159 A 1579 1579
266 England 28160 T 1579 1579
267 England 28161 T 1579 1579
268 England 28162 G 1579 1579
269 England 28163 C 1579 1578
270 England 28164 C 1579 1578
271 England 28165 A 1579 1579
272 England 28166 G 1579 1579
273 England 28167 G 1579 1579
274 England 28168 A 1579 1579
275 England 28169 A 1579 1577
276 England 28170 C 1579 1579
277 England 28171 C 1579 1579
278 England 28172 T 1579 1579
279 England 28173 A 1579 1579
280 England 28174 A 1579 1579
281 England 28175 A G 1579 1578 Lys94Lys
282 England 28176 T 1579 1579
283 England 28177 T 1579 1579
284 England 28178 G A 1579 1578 Leu95Leu
285 England 28179 G 1579 1579
286 England 28180 G 1579 1579
287 England 28181 T 1579 1579
288 England 28182 A 1579 1579
289 England 28183 G 1579 1579
290 England 28184 T 1579 1579
291 England 28185 C 1579 1579
292 England 28186 T 1579 1579
293 England 28187 T 1579 1579
294 England 28188 G 1579 1579
295 England 28189 T 1579 1579
296 England 28190 A 1579 1579
297 England 28191 G 1579 1579
298 England 28192 T 1579 1579
299 England 28193 G 1579 1579
300 England 28194 C 1579 1579
301 England 28195 G 1579 1579
302 England 28196 T 1579 1579
303 England 28197 T 1579 1579
304 England 28198 G 1579 1579
305 England 28199 T 1579 1579
306 England 28200 T 1579 1579
307 England 28201 C 1579 1579
308 England 28202 G 1579 1579
309 England 28203 T 1579 1579
310 England 28204 T 1579 1579
311 England 28205 C 1579 1579
312 England 28206 T 1579 1579
313 England 28207 A 1579 1579
314 England 28208 T 1579 1579
315 England 28209 G 1579 1579
316 England 28210 A 1579 1579
317 England 28211 A 1579 1579
318 England 28212 G 1579 1579
319 England 28213 A 1579 1579
320 England 28214 C 1579 1579
321 England 28215 T 1579 1579
322 England 28216 T 1579 1579
323 England 28217 T 1579 1579
324 England 28218 T 1579 1579
325 England 28219 T 1579 1579
326 England 28220 A 1579 1579
327 England 28221 G 1579 1579
328 England 28222 A 1579 1579
329 England 28223 G 1579 1579
330 England 28224 T 1579 1579
331 England 28225 A 1579 1579
332 England 28226 T 1579 1579
333 England 28227 C 1579 1579
334 England 28228 A 1579 1579
335 England 28229 T 1579 1579
336 England 28230 G 1579 1579
337 England 28231 A 1579 1579
338 England 28232 C 1579 1579
339 England 28233 G A 1579 1578 Val114Ile
340 England 28234 T 1579 1579
341 England 28235 T 1579 1579
342 England 28236 C 1579 1579
343 England 28237 G T 1579 1578 Arg115Leu
344 England 28238 T 1579 1579
345 England 28239 G 1579 1579
346 England 28240 T 1579 1579
347 England 28241 T 1579 1579
348 England 28242 G 1579 1579
349 England 28243 T 1579 1579
350 England 28244 T 1579 1579
351 England 28245 T 1579 1579
352 England 28246 T 1579 1579
353 England 28247 A 1579 1579
354 England 28248 G 1579 1579
355 England 28249 A 1579 1579
356 England 28250 T 1579 1579
357 England 28251 T C 1579 1578 Phe120Leu
358 England 28252 T 1579 1579
359 England 28253 C T 1579 1565 Phe120Phe
360 England 28254 A 1579 1578
361 England 28255 T 1579 1579
362 England 28256 C 1579 1579
363 England 28257 T 1579 1579
364 England 28258 A 1579 1579
365 England 28259 A 1579 1579