National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E     18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                         1              
Q     18                                        
R     12                                        
S     27                   1                    
T     15                                        
V     36                   1                    
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 El_Salvador 27894 A 6 6
1 El_Salvador 27895 T 6 6
2 El_Salvador 27896 G 6 6
3 El_Salvador 27897 A 6 6
4 El_Salvador 27898 A 6 6
5 El_Salvador 27899 A 6 6
6 El_Salvador 27900 T 6 6
7 El_Salvador 27901 T 6 6
8 El_Salvador 27902 T 6 6
9 El_Salvador 27903 C 6 6
10 El_Salvador 27904 T 6 6
11 El_Salvador 27905 T 6 6
12 El_Salvador 27906 G 6 6
13 El_Salvador 27907 T 6 6
14 El_Salvador 27908 T 6 6
15 El_Salvador 27909 T 6 6
16 El_Salvador 27910 T 6 6
17 El_Salvador 27911 C 6 6
18 El_Salvador 27912 T 6 6
19 El_Salvador 27913 T 6 6
20 El_Salvador 27914 A 6 6
21 El_Salvador 27915 G 6 6
22 El_Salvador 27916 G 6 6
23 El_Salvador 27917 A 6 6
24 El_Salvador 27918 A 6 6
25 El_Salvador 27919 T 6 6
26 El_Salvador 27920 C 6 6
27 El_Salvador 27921 A 6 6
28 El_Salvador 27922 T 6 6
29 El_Salvador 27923 C 6 6
30 El_Salvador 27924 A 6 6
31 El_Salvador 27925 C 6 6
32 El_Salvador 27926 A 6 6
33 El_Salvador 27927 A 6 6
34 El_Salvador 27928 C 6 6
35 El_Salvador 27929 T 6 6
36 El_Salvador 27930 G 6 6
37 El_Salvador 27931 T 6 6
38 El_Salvador 27932 A 6 6
39 El_Salvador 27933 G 6 6
40 El_Salvador 27934 C 6 6
41 El_Salvador 27935 T 6 6
42 El_Salvador 27936 G 6 6
43 El_Salvador 27937 C 6 6
44 El_Salvador 27938 A 6 6
45 El_Salvador 27939 T 6 6
46 El_Salvador 27940 T 6 6
47 El_Salvador 27941 T 6 6
48 El_Salvador 27942 C 6 6
49 El_Salvador 27943 A 6 6
50 El_Salvador 27944 C 6 6
51 El_Salvador 27945 C 6 6
52 El_Salvador 27946 A 6 6
53 El_Salvador 27947 A 6 6
54 El_Salvador 27948 G 6 6
55 El_Salvador 27949 A 6 6
56 El_Salvador 27950 A 6 6
57 El_Salvador 27951 T 6 6
58 El_Salvador 27952 G 6 6
59 El_Salvador 27953 T 6 6
60 El_Salvador 27954 A 6 6
61 El_Salvador 27955 G 6 6
62 El_Salvador 27956 T 6 6
63 El_Salvador 27957 T 6 6
64 El_Salvador 27958 T 6 6
65 El_Salvador 27959 A 6 6
66 El_Salvador 27960 C 6 6
67 El_Salvador 27961 A 6 6
68 El_Salvador 27962 G 6 6
69 El_Salvador 27963 T 6 6
70 El_Salvador 27964 C T 6 0 Ser24Leu
71 El_Salvador 27965 A 6 6
72 El_Salvador 27966 T 6 6
73 El_Salvador 27967 G 6 6
74 El_Salvador 27968 T 6 6
75 El_Salvador 27969 A 6 6
76 El_Salvador 27970 C 6 6
77 El_Salvador 27971 T 6 6
78 El_Salvador 27972 C 6 6
79 El_Salvador 27973 A 6 6
80 El_Salvador 27974 A 6 6
81 El_Salvador 27975 C 6 6
82 El_Salvador 27976 A 6 6
83 El_Salvador 27977 T 6 6
84 El_Salvador 27978 C 6 6
85 El_Salvador 27979 A 6 6
86 El_Salvador 27980 A 6 6
87 El_Salvador 27981 C 6 6
88 El_Salvador 27982 C 6 6
89 El_Salvador 27983 A G 6 5 Pro30Pro
90 El_Salvador 27984 T 6 6
91 El_Salvador 27985 A 6 6
92 El_Salvador 27986 T 6 6
93 El_Salvador 27987 G 6 6
94 El_Salvador 27988 T 6 6
95 El_Salvador 27989 A 6 6
96 El_Salvador 27990 G 6 6
97 El_Salvador 27991 T 6 6
98 El_Salvador 27992 T 6 6
99 El_Salvador 27993 G 6 6
100 El_Salvador 27994 A 6 6
101 El_Salvador 27995 T 6 6
102 El_Salvador 27996 G 6 6
103 El_Salvador 27997 A 6 6
104 El_Salvador 27998 C 6 6
105 El_Salvador 27999 C 6 6
106 El_Salvador 28000 C 6 6
107 El_Salvador 28001 G 6 6
108 El_Salvador 28002 T 6 6
109 El_Salvador 28003 G 6 6
110 El_Salvador 28004 T 6 6
111 El_Salvador 28005 C 6 6
112 El_Salvador 28006 C 6 6
113 El_Salvador 28007 T 6 6
114 El_Salvador 28008 A 6 6
115 El_Salvador 28009 T 6 6
116 El_Salvador 28010 T 6 6
117 El_Salvador 28011 C 6 6
118 El_Salvador 28012 A 6 6
119 El_Salvador 28013 C 6 6
120 El_Salvador 28014 T 6 6
121 El_Salvador 28015 T 6 6
122 El_Salvador 28016 C 6 6
123 El_Salvador 28017 T 6 6
124 El_Salvador 28018 A 6 6
125 El_Salvador 28019 T 6 6
126 El_Salvador 28020 T 6 6
127 El_Salvador 28021 C 6 6
128 El_Salvador 28022 T 6 6
129 El_Salvador 28023 A 6 6
130 El_Salvador 28024 A 6 6
131 El_Salvador 28025 A 6 6
132 El_Salvador 28026 T 6 6
133 El_Salvador 28027 G 6 6
134 El_Salvador 28028 G 6 6
135 El_Salvador 28029 T 6 6
136 El_Salvador 28030 A 6 6
137 El_Salvador 28031 T 6 6
138 El_Salvador 28032 A 6 6
139 El_Salvador 28033 T 6 6
140 El_Salvador 28034 T 6 6
141 El_Salvador 28035 A 6 6
142 El_Salvador 28036 G 6 6
143 El_Salvador 28037 A 6 6
144 El_Salvador 28038 G 6 6
145 El_Salvador 28039 T 6 6
146 El_Salvador 28040 A 6 6
147 El_Salvador 28041 G 6 6
148 El_Salvador 28042 G 6 6
149 El_Salvador 28043 A 6 6
150 El_Salvador 28044 G 6 6
151 El_Salvador 28045 C 6 6
152 El_Salvador 28046 T 6 6
153 El_Salvador 28047 A 6 6
154 El_Salvador 28048 G 6 6
155 El_Salvador 28049 A 6 6
156 El_Salvador 28050 A 6 6
157 El_Salvador 28051 A 6 6
158 El_Salvador 28052 A 6 6
159 El_Salvador 28053 T 6 6
160 El_Salvador 28054 C 6 6
161 El_Salvador 28055 A 6 6
162 El_Salvador 28056 G 6 6
163 El_Salvador 28057 C 6 6
164 El_Salvador 28058 A 6 6
165 El_Salvador 28059 C 6 6
166 El_Salvador 28060 C 6 6
167 El_Salvador 28061 T 6 6
168 El_Salvador 28062 T 6 6
169 El_Salvador 28063 T 6 6
170 El_Salvador 28064 A 6 6
171 El_Salvador 28065 A 6 6
172 El_Salvador 28066 T 6 6
173 El_Salvador 28067 T 6 6
174 El_Salvador 28068 G 6 6
175 El_Salvador 28069 A 6 6
176 El_Salvador 28070 A 6 6
177 El_Salvador 28071 T 6 6
178 El_Salvador 28072 T 6 6
179 El_Salvador 28073 G 6 6
180 El_Salvador 28074 T 6 6
181 El_Salvador 28075 G 6 6
182 El_Salvador 28076 C 6 6
183 El_Salvador 28077 G T 6 5 Val62Leu
184 El_Salvador 28078 T 6 6
185 El_Salvador 28079 G 6 6
186 El_Salvador 28080 G 6 6
187 El_Salvador 28081 A 6 6
188 El_Salvador 28082 T 6 6
189 El_Salvador 28083 G 6 6
190 El_Salvador 28084 A 6 6
191 El_Salvador 28085 G 6 6
192 El_Salvador 28086 G 6 6
193 El_Salvador 28087 C 6 6
194 El_Salvador 28088 T 6 6
195 El_Salvador 28089 G 6 6
196 El_Salvador 28090 G 6 6
197 El_Salvador 28091 T 6 6
198 El_Salvador 28092 T 6 6
199 El_Salvador 28093 C 6 6
200 El_Salvador 28094 T 6 6
201 El_Salvador 28095 A 6 6
202 El_Salvador 28096 A 6 6
203 El_Salvador 28097 A 6 6
204 El_Salvador 28098 T 6 6
205 El_Salvador 28099 C 6 6
206 El_Salvador 28100 A 6 6
207 El_Salvador 28101 C 6 6
208 El_Salvador 28102 C 6 6
209 El_Salvador 28103 C 6 6
210 El_Salvador 28104 A 6 6
211 El_Salvador 28105 T 6 6
212 El_Salvador 28106 T 6 6
213 El_Salvador 28107 C 6 6
214 El_Salvador 28108 A 6 6
215 El_Salvador 28109 G 6 6
216 El_Salvador 28110 T 6 6
217 El_Salvador 28111 A 6 6
218 El_Salvador 28112 C 6 6
219 El_Salvador 28113 A 6 6
220 El_Salvador 28114 T 6 6
221 El_Salvador 28115 C 6 6
222 El_Salvador 28116 G 6 6
223 El_Salvador 28117 A 6 6
224 El_Salvador 28118 T 6 6
225 El_Salvador 28119 A 6 6
226 El_Salvador 28120 T 6 6
227 El_Salvador 28121 C 6 6
228 El_Salvador 28122 G 6 6
229 El_Salvador 28123 G 6 6
230 El_Salvador 28124 T 6 6
231 El_Salvador 28125 A 6 6
232 El_Salvador 28126 A 6 6
233 El_Salvador 28127 T 6 6
234 El_Salvador 28128 T 6 6
235 El_Salvador 28129 A 6 6
236 El_Salvador 28130 T 6 6
237 El_Salvador 28131 A 6 6
238 El_Salvador 28132 C 6 6
239 El_Salvador 28133 A 6 6
240 El_Salvador 28134 G 6 6
241 El_Salvador 28135 T 6 6
242 El_Salvador 28136 T 6 6
243 El_Salvador 28137 T 6 6
244 El_Salvador 28138 C 6 6
245 El_Salvador 28139 C 6 6
246 El_Salvador 28140 T 6 6
247 El_Salvador 28141 G 6 6
248 El_Salvador 28142 T 6 6
249 El_Salvador 28143 T 6 6
250 El_Salvador 28144 T 6 6
251 El_Salvador 28145 A 6 6
252 El_Salvador 28146 C 6 6
253 El_Salvador 28147 C 6 6
254 El_Salvador 28148 T 6 6
255 El_Salvador 28149 T 6 6
256 El_Salvador 28150 T 6 6
257 El_Salvador 28151 T 6 6
258 El_Salvador 28152 A 6 6
259 El_Salvador 28153 C 6 6
260 El_Salvador 28154 A 6 6
261 El_Salvador 28155 A 6 6
262 El_Salvador 28156 T 6 6
263 El_Salvador 28157 T 6 6
264 El_Salvador 28158 A 6 6
265 El_Salvador 28159 A 6 6
266 El_Salvador 28160 T 6 6
267 El_Salvador 28161 T 6 6
268 El_Salvador 28162 G 6 6
269 El_Salvador 28163 C 6 6
270 El_Salvador 28164 C 6 6
271 El_Salvador 28165 A 6 6
272 El_Salvador 28166 G 6 6
273 El_Salvador 28167 G 6 6
274 El_Salvador 28168 A 6 6
275 El_Salvador 28169 A 6 6
276 El_Salvador 28170 C 6 6
277 El_Salvador 28171 C 6 6
278 El_Salvador 28172 T 6 6
279 El_Salvador 28173 A 6 6
280 El_Salvador 28174 A 6 6
281 El_Salvador 28175 A 6 6
282 El_Salvador 28176 T 6 6
283 El_Salvador 28177 T 6 6
284 El_Salvador 28178 G 6 6
285 El_Salvador 28179 G 6 6
286 El_Salvador 28180 G 6 6
287 El_Salvador 28181 T 6 6
288 El_Salvador 28182 A 6 6
289 El_Salvador 28183 G 6 6
290 El_Salvador 28184 T 6 6
291 El_Salvador 28185 C 6 6
292 El_Salvador 28186 T 6 6
293 El_Salvador 28187 T 6 6
294 El_Salvador 28188 G 6 6
295 El_Salvador 28189 T 6 6
296 El_Salvador 28190 A 6 6
297 El_Salvador 28191 G 6 6
298 El_Salvador 28192 T 6 6
299 El_Salvador 28193 G 6 6
300 El_Salvador 28194 C 6 6
301 El_Salvador 28195 G 6 6
302 El_Salvador 28196 T 6 6
303 El_Salvador 28197 T 6 6
304 El_Salvador 28198 G 6 6
305 El_Salvador 28199 T 6 6
306 El_Salvador 28200 T 6 6
307 El_Salvador 28201 C 6 6
308 El_Salvador 28202 G 6 6
309 El_Salvador 28203 T 6 6
310 El_Salvador 28204 T 6 6
311 El_Salvador 28205 C 6 6
312 El_Salvador 28206 T 6 6
313 El_Salvador 28207 A 6 6
314 El_Salvador 28208 T 6 6
315 El_Salvador 28209 G 6 6
316 El_Salvador 28210 A 6 6
317 El_Salvador 28211 A 6 6
318 El_Salvador 28212 G 6 6
319 El_Salvador 28213 A 6 6
320 El_Salvador 28214 C 6 6
321 El_Salvador 28215 T 6 6
322 El_Salvador 28216 T 6 6
323 El_Salvador 28217 T 6 6
324 El_Salvador 28218 T 6 6
325 El_Salvador 28219 T 6 6
326 El_Salvador 28220 A 6 6
327 El_Salvador 28221 G 6 6
328 El_Salvador 28222 A 6 6
329 El_Salvador 28223 G 6 6
330 El_Salvador 28224 T 6 6
331 El_Salvador 28225 A 6 6
332 El_Salvador 28226 T 6 6
333 El_Salvador 28227 C 6 6
334 El_Salvador 28228 A 6 6
335 El_Salvador 28229 T 6 6
336 El_Salvador 28230 G 6 6
337 El_Salvador 28231 A 6 6
338 El_Salvador 28232 C 6 6
339 El_Salvador 28233 G 6 6
340 El_Salvador 28234 T 6 6
341 El_Salvador 28235 T 6 6
342 El_Salvador 28236 C 6 6
343 El_Salvador 28237 G 6 6
344 El_Salvador 28238 T 6 6
345 El_Salvador 28239 G 6 6
346 El_Salvador 28240 T 6 6
347 El_Salvador 28241 T 6 6
348 El_Salvador 28242 G 6 6
349 El_Salvador 28243 T 6 6
350 El_Salvador 28244 T 6 6
351 El_Salvador 28245 T 6 6
352 El_Salvador 28246 T 6 6
353 El_Salvador 28247 A 6 6
354 El_Salvador 28248 G 6 6
355 El_Salvador 28249 A 6 6
356 El_Salvador 28250 T 6 6
357 El_Salvador 28251 T 6 6
358 El_Salvador 28252 T 6 6
359 El_Salvador 28253 C 6 6
360 El_Salvador 28254 A 6 6
361 El_Salvador 28255 T 6 6
362 El_Salvador 28256 C 6 6
363 El_Salvador 28257 T 6 6
364 El_Salvador 28258 A 6 6
365 El_Salvador 28259 A 6 6