National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21   1                                    
D     22           1                           1
E     18     1                     1            
F     24         1                     1        
G     15                                        
H     12                                        
I     30         1                       1      
K     15                                        
L     30         1                     1        
M     3                                        
N     6                                        
P     21                                 1      
Q     18                                        
R     12               1   1                    
S     27         1                   1 3        
T     15                                        
V     36         1         1               1    
W     3                                        
Y     21                                       1

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Egypt 27894 A 366 366
1 Egypt 27895 T 366 366
2 Egypt 27896 G 366 366
3 Egypt 27897 A 366 366
4 Egypt 27898 A 366 366
5 Egypt 27899 A 366 366
6 Egypt 27900 T 366 366
7 Egypt 27901 T C 366 364 Phe3Ser
8 Egypt 27902 T 366 366
9 Egypt 27903 C 366 366
10 Egypt 27904 T 366 366
11 Egypt 27905 T 366 366
12 Egypt 27906 G 366 366
13 Egypt 27907 T 366 366
14 Egypt 27908 T 366 366
15 Egypt 27909 T 366 366
16 Egypt 27910 T 366 366
17 Egypt 27911 C 366 366
18 Egypt 27912 T 366 366
19 Egypt 27913 T 366 366
20 Egypt 27914 A 366 366
21 Egypt 27915 G 366 366
22 Egypt 27916 G 366 366
23 Egypt 27917 A 366 366
24 Egypt 27918 A 366 366
25 Egypt 27919 T 366 366
26 Egypt 27920 C 366 366
27 Egypt 27921 A 366 366
28 Egypt 27922 T C 366 361 Ile10Thr
29 Egypt 27923 C 366 366
30 Egypt 27924 A 366 366
31 Egypt 27925 C 366 366
32 Egypt 27926 A 366 366
33 Egypt 27927 A 366 366
34 Egypt 27928 C 366 366
35 Egypt 27929 T 366 366
36 Egypt 27930 G 366 366
37 Egypt 27931 T 366 366
38 Egypt 27932 A 366 366
39 Egypt 27933 G 366 366
40 Egypt 27934 C 366 366
41 Egypt 27935 T 366 366
42 Egypt 27936 G 366 366
43 Egypt 27937 C 366 366
44 Egypt 27938 A 366 366
45 Egypt 27939 T 366 366
46 Egypt 27940 T 366 366
47 Egypt 27941 T 366 366
48 Egypt 27942 C 366 366
49 Egypt 27943 A 366 366
50 Egypt 27944 C 366 366
51 Egypt 27945 C 366 366
52 Egypt 27946 A 366 366
53 Egypt 27947 A 366 365
54 Egypt 27948 G 366 366
55 Egypt 27949 A 366 366
56 Egypt 27950 A 366 366
57 Egypt 27951 T 366 366
58 Egypt 27952 G 366 366
59 Egypt 27953 T 366 366
60 Egypt 27954 A 366 366
61 Egypt 27955 G 366 366
62 Egypt 27956 T G 366 365 Ser21Arg
63 Egypt 27957 T 366 366
64 Egypt 27958 T 366 366
65 Egypt 27959 A 366 366
66 Egypt 27960 C 366 366
67 Egypt 27961 A 366 366
68 Egypt 27962 G 366 366
69 Egypt 27963 T 366 366
70 Egypt 27964 C 366 366
71 Egypt 27965 A 366 366
72 Egypt 27966 T 366 366
73 Egypt 27967 G 366 366
74 Egypt 27968 T 366 366
75 Egypt 27969 A 366 366
76 Egypt 27970 C 366 366
77 Egypt 27971 T 366 366
78 Egypt 27972 C 366 366
79 Egypt 27973 A 366 366
80 Egypt 27974 A 366 366
81 Egypt 27975 C 366 366
82 Egypt 27976 A 366 366
83 Egypt 27977 T 366 366
84 Egypt 27978 C 366 366
85 Egypt 27979 A 366 366
86 Egypt 27980 A 366 366
87 Egypt 27981 C 366 366
88 Egypt 27982 C 366 365
89 Egypt 27983 A 366 366
90 Egypt 27984 T 366 366
91 Egypt 27985 A 366 366
92 Egypt 27986 T 366 366
93 Egypt 27987 G 366 366
94 Egypt 27988 T 366 366
95 Egypt 27989 A 366 366
96 Egypt 27990 G T 366 365 Val33Phe
97 Egypt 27991 T 366 366
98 Egypt 27992 T 366 366
99 Egypt 27993 G 366 366
100 Egypt 27994 A 366 366
101 Egypt 27995 T 366 366
102 Egypt 27996 G 366 366
103 Egypt 27997 A 366 366
104 Egypt 27998 C 366 366
105 Egypt 27999 C 366 366
106 Egypt 28000 C 366 366
107 Egypt 28001 G 366 366
108 Egypt 28002 T 366 366
109 Egypt 28003 G 366 366
110 Egypt 28004 T 366 366
111 Egypt 28005 C A 366 365 Pro38Thr
112 Egypt 28006 C 366 366
113 Egypt 28007 T 366 366
114 Egypt 28008 A 366 366
115 Egypt 28009 T 366 366
116 Egypt 28010 T 366 366
117 Egypt 28011 C 366 366
118 Egypt 28012 A 366 366
119 Egypt 28013 C 366 366
120 Egypt 28014 T 366 366
121 Egypt 28015 T 366 366
122 Egypt 28016 C 366 366
123 Egypt 28017 T 366 366
124 Egypt 28018 A 366 366
125 Egypt 28019 T 366 366
126 Egypt 28020 T 366 366
127 Egypt 28021 C 366 366
128 Egypt 28022 T 366 366
129 Egypt 28023 A 366 366
130 Egypt 28024 A 366 366
131 Egypt 28025 A 366 366
132 Egypt 28026 T 366 366
133 Egypt 28027 G 366 366
134 Egypt 28028 G 366 366
135 Egypt 28029 T 366 366
136 Egypt 28030 A 366 366
137 Egypt 28031 T C 366 364 Tyr46Tyr
138 Egypt 28032 A 366 366
139 Egypt 28033 T 366 366
140 Egypt 28034 T 366 366
141 Egypt 28035 A 366 366
142 Egypt 28036 G 366 366
143 Egypt 28037 A 366 366
144 Egypt 28038 G 366 366
145 Egypt 28039 T 366 366
146 Egypt 28040 A 366 366
147 Egypt 28041 G 366 366
148 Egypt 28042 G 366 366
149 Egypt 28043 A 366 366
150 Egypt 28044 G 366 366
151 Egypt 28045 C 366 366
152 Egypt 28046 T 366 366
153 Egypt 28047 A 366 366
154 Egypt 28048 G T 366 365 Arg52Ile
155 Egypt 28049 A 366 366
156 Egypt 28050 A 366 366
157 Egypt 28051 A 366 366
158 Egypt 28052 A 366 366
159 Egypt 28053 T 366 366
160 Egypt 28054 C 366 366
161 Egypt 28055 A G 366 365 Ser54Ser
162 Egypt 28056 G 366 366
163 Egypt 28057 C 366 366
164 Egypt 28058 A 366 366
165 Egypt 28059 C 366 366
166 Egypt 28060 C 366 366
167 Egypt 28061 T 366 366
168 Egypt 28062 T 366 366
169 Egypt 28063 T 366 366
170 Egypt 28064 A 366 366
171 Egypt 28065 A 366 366
172 Egypt 28066 T 366 366
173 Egypt 28067 T 366 366
174 Egypt 28068 G 366 366
175 Egypt 28069 A 366 366
176 Egypt 28070 A 366 366
177 Egypt 28071 T 366 366
178 Egypt 28072 T 366 366
179 Egypt 28073 G 366 366
180 Egypt 28074 T 366 366
181 Egypt 28075 G 366 366
182 Egypt 28076 C T 366 364 Cys61Cys
183 Egypt 28077 G T 366 364 Val62Leu
184 Egypt 28078 T 366 366
185 Egypt 28079 G T 366 344 Val62Val
186 Egypt 28080 G 366 366
187 Egypt 28081 A G 366 365 Asp63Gly
188 Egypt 28082 T 366 366
189 Egypt 28083 G 366 365
190 Egypt 28084 A 366 366
191 Egypt 28085 G T 366 365 Glu64Asp
192 Egypt 28086 G 366 366
193 Egypt 28087 C 366 365
194 Egypt 28088 T 366 366
195 Egypt 28089 G 366 366
196 Egypt 28090 G 366 366
197 Egypt 28091 T 366 366
198 Egypt 28092 T 366 366
199 Egypt 28093 C T 366 361 Ser67Phe
200 Egypt 28094 T C 366 365 Ser67Ser
201 Egypt 28095 A 366 366
202 Egypt 28096 A 366 366
203 Egypt 28097 A 366 366
204 Egypt 28098 T 366 366
205 Egypt 28099 C 366 366
206 Egypt 28100 A 366 366
207 Egypt 28101 C 366 366
208 Egypt 28102 C 366 366
209 Egypt 28103 C 366 366
210 Egypt 28104 A 366 366
211 Egypt 28105 T 366 366
212 Egypt 28106 T 366 366
213 Egypt 28107 C 366 366
214 Egypt 28108 A 366 365
215 Egypt 28109 G 366 366
216 Egypt 28110 T 366 366
217 Egypt 28111 A 366 366
218 Egypt 28112 C 366 366
219 Egypt 28113 A T 366 365 Ile74Phe
220 Egypt 28114 T 366 366
221 Egypt 28115 C 366 366
222 Egypt 28116 G 366 366
223 Egypt 28117 A 366 366
224 Egypt 28118 T 366 366
225 Egypt 28119 A 366 366
226 Egypt 28120 T 366 366
227 Egypt 28121 C 366 366
228 Egypt 28122 G 366 366
229 Egypt 28123 G 366 366
230 Egypt 28124 T 366 366
231 Egypt 28125 A 366 366
232 Egypt 28126 A 366 366
233 Egypt 28127 T 366 366
234 Egypt 28128 T 366 366
235 Egypt 28129 A 366 366
236 Egypt 28130 T 366 366
237 Egypt 28131 A 366 366
238 Egypt 28132 C 366 366
239 Egypt 28133 A 366 366
240 Egypt 28134 G 366 366
241 Egypt 28135 T 366 366
242 Egypt 28136 T 366 366
243 Egypt 28137 T 366 366
244 Egypt 28138 C 366 366
245 Egypt 28139 C 366 366
246 Egypt 28140 T 366 366
247 Egypt 28141 G 366 366
248 Egypt 28142 T 366 366
249 Egypt 28143 T 366 366
250 Egypt 28144 T C 366 356 Leu84Ser
251 Egypt 28145 A 366 366
252 Egypt 28146 C 366 366
253 Egypt 28147 C 366 366
254 Egypt 28148 T 366 366
255 Egypt 28149 T 366 366
256 Egypt 28150 T 366 366
257 Egypt 28151 T 366 366
258 Egypt 28152 A 366 366
259 Egypt 28153 C 366 366
260 Egypt 28154 A 366 366
261 Egypt 28155 A 366 366
262 Egypt 28156 T 366 366
263 Egypt 28157 T 366 366
264 Egypt 28158 A 366 366
265 Egypt 28159 A 366 366
266 Egypt 28160 T 366 366
267 Egypt 28161 T 366 366
268 Egypt 28162 G 366 366
269 Egypt 28163 C 366 366
270 Egypt 28164 C 366 366
271 Egypt 28165 A 366 366
272 Egypt 28166 G 366 366
273 Egypt 28167 G 366 366
274 Egypt 28168 A 366 366
275 Egypt 28169 A 366 366
276 Egypt 28170 C 366 366
277 Egypt 28171 C 366 366
278 Egypt 28172 T 366 366
279 Egypt 28173 A 366 366
280 Egypt 28174 A 366 366
281 Egypt 28175 A 366 366
282 Egypt 28176 T 366 366
283 Egypt 28177 T 366 366
284 Egypt 28178 G T 366 365 Leu95Phe
285 Egypt 28179 G 366 366
286 Egypt 28180 G 366 366
287 Egypt 28181 T 366 366
288 Egypt 28182 A 366 366
289 Egypt 28183 G 366 366
290 Egypt 28184 T 366 366
291 Egypt 28185 C 366 366
292 Egypt 28186 T 366 366
293 Egypt 28187 T 366 366
294 Egypt 28188 G 366 366
295 Egypt 28189 T 366 366
296 Egypt 28190 A 366 366
297 Egypt 28191 G 366 366
298 Egypt 28192 T 366 366
299 Egypt 28193 G 366 366
300 Egypt 28194 C 366 366
301 Egypt 28195 G 366 366
302 Egypt 28196 T 366 366
303 Egypt 28197 T 366 366
304 Egypt 28198 G 366 366
305 Egypt 28199 T 366 366
306 Egypt 28200 T 366 366
307 Egypt 28201 C 366 366
308 Egypt 28202 G T 366 365 Ser103Ser
309 Egypt 28203 T 366 366
310 Egypt 28204 T 366 366
311 Egypt 28205 C 366 366
312 Egypt 28206 T 366 366
313 Egypt 28207 A 366 366
314 Egypt 28208 T 366 366
315 Egypt 28209 G 366 366
316 Egypt 28210 A 366 366
317 Egypt 28211 A 366 366
318 Egypt 28212 G 366 366
319 Egypt 28213 A 366 366
320 Egypt 28214 C 366 366
321 Egypt 28215 T 366 366
322 Egypt 28216 T 366 366
323 Egypt 28217 T 366 366
324 Egypt 28218 T 366 366
325 Egypt 28219 T 366 366
326 Egypt 28220 A 366 366
327 Egypt 28221 G C 366 365 Glu110Gln
328 Egypt 28222 A 366 366
329 Egypt 28223 G 366 366
330 Egypt 28224 T 366 366
331 Egypt 28225 A 366 366
332 Egypt 28226 T 366 366
333 Egypt 28227 C 366 366
334 Egypt 28228 A 366 366
335 Egypt 28229 T 366 366
336 Egypt 28230 G T 366 365 Asp113Tyr
337 Egypt 28231 A 366 366
338 Egypt 28232 C 366 366
339 Egypt 28233 G 366 366
340 Egypt 28234 T 366 366
341 Egypt 28235 T 366 366
342 Egypt 28236 C 366 366
343 Egypt 28237 G T 366 365 Arg115Leu
344 Egypt 28238 T 366 366
345 Egypt 28239 G 366 366
346 Egypt 28240 T 366 366
347 Egypt 28241 T 366 366
348 Egypt 28242 G 366 365
349 Egypt 28243 T 366 366
350 Egypt 28244 T 366 366
351 Egypt 28245 T 366 364
352 Egypt 28246 T 366 366
353 Egypt 28247 A 366 366
354 Egypt 28248 G 366 366
355 Egypt 28249 A 366 366
356 Egypt 28250 T 366 365
357 Egypt 28251 T 366 365
358 Egypt 28252 T 366 366
359 Egypt 28253 C T 366 354 Phe120Phe
360 Egypt 28254 A 366 366
361 Egypt 28255 T 366 366
362 Egypt 28256 C 366 366
363 Egypt 28257 T 366 366
364 Egypt 28258 A 366 366
365 Egypt 28259 A 366 366