National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21   1                                    
D     22                                        
E 1   18 2                                      
F     24                                        
G     15                                   1    
H     12                                        
I     30                                        
K     15                                        
L     30         1                              
M     3                                        
N     6                                        
P     21             1           1              
Q     18                                        
R     12                                        
S     27                               1        
T     15                         1              
V     36                                        
W     3                                        
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Dominican_Republic 27894 A 8 8
1 Dominican_Republic 27895 T 8 8
2 Dominican_Republic 27896 G 8 8
3 Dominican_Republic 27897 A 8 8
4 Dominican_Republic 27898 A 8 8
5 Dominican_Republic 27899 A 8 8
6 Dominican_Republic 27900 T 8 8
7 Dominican_Republic 27901 T 8 8
8 Dominican_Republic 27902 T 8 8
9 Dominican_Republic 27903 C 8 8
10 Dominican_Republic 27904 T 8 8
11 Dominican_Republic 27905 T 8 8
12 Dominican_Republic 27906 G 8 8
13 Dominican_Republic 27907 T 8 8
14 Dominican_Republic 27908 T 8 8
15 Dominican_Republic 27909 T 8 8
16 Dominican_Republic 27910 T 8 8
17 Dominican_Republic 27911 C 8 8
18 Dominican_Republic 27912 T 8 8
19 Dominican_Republic 27913 T 8 8
20 Dominican_Republic 27914 A 8 8
21 Dominican_Republic 27915 G 8 8
22 Dominican_Republic 27916 G 8 8
23 Dominican_Republic 27917 A 8 8
24 Dominican_Republic 27918 A 8 8
25 Dominican_Republic 27919 T 8 8
26 Dominican_Republic 27920 C 8 8
27 Dominican_Republic 27921 A 8 8
28 Dominican_Republic 27922 T 8 8
29 Dominican_Republic 27923 C 8 8
30 Dominican_Republic 27924 A 8 8
31 Dominican_Republic 27925 C 8 8
32 Dominican_Republic 27926 A 8 8
33 Dominican_Republic 27927 A 8 8
34 Dominican_Republic 27928 C 8 8
35 Dominican_Republic 27929 T 8 8
36 Dominican_Republic 27930 G 8 8
37 Dominican_Republic 27931 T 8 8
38 Dominican_Republic 27932 A 8 8
39 Dominican_Republic 27933 G 8 8
40 Dominican_Republic 27934 C 8 8
41 Dominican_Republic 27935 T 8 8
42 Dominican_Republic 27936 G 8 8
43 Dominican_Republic 27937 C 8 8
44 Dominican_Republic 27938 A 8 8
45 Dominican_Republic 27939 T 8 8
46 Dominican_Republic 27940 T 8 8
47 Dominican_Republic 27941 T 8 8
48 Dominican_Republic 27942 C 8 8
49 Dominican_Republic 27943 A 8 8
50 Dominican_Republic 27944 C 8 8
51 Dominican_Republic 27945 C 8 8
52 Dominican_Republic 27946 A 8 8
53 Dominican_Republic 27947 A 8 8
54 Dominican_Republic 27948 G 8 8
55 Dominican_Republic 27949 A 8 8
56 Dominican_Republic 27950 A 8 8
57 Dominican_Republic 27951 T 8 8
58 Dominican_Republic 27952 G 8 8
59 Dominican_Republic 27953 T 8 8
60 Dominican_Republic 27954 A 8 8
61 Dominican_Republic 27955 G 8 8
62 Dominican_Republic 27956 T 8 8
63 Dominican_Republic 27957 T 8 8
64 Dominican_Republic 27958 T 8 8
65 Dominican_Republic 27959 A 8 8
66 Dominican_Republic 27960 C 8 8
67 Dominican_Republic 27961 A 8 8
68 Dominican_Republic 27962 G 8 8
69 Dominican_Republic 27963 T 8 8
70 Dominican_Republic 27964 C 8 8
71 Dominican_Republic 27965 A 8 8
72 Dominican_Republic 27966 T 8 8
73 Dominican_Republic 27967 G 8 8
74 Dominican_Republic 27968 T 8 8
75 Dominican_Republic 27969 A 8 8
76 Dominican_Republic 27970 C 8 8
77 Dominican_Republic 27971 T 8 8
78 Dominican_Republic 27972 C 8 8
79 Dominican_Republic 27973 A 8 8
80 Dominican_Republic 27974 A 8 8
81 Dominican_Republic 27975 C 8 8
82 Dominican_Republic 27976 A 8 8
83 Dominican_Republic 27977 T 8 8
84 Dominican_Republic 27978 C 8 8
85 Dominican_Republic 27979 A 8 8
86 Dominican_Republic 27980 A 8 8
87 Dominican_Republic 27981 C 8 8
88 Dominican_Republic 27982 C 8 8
89 Dominican_Republic 27983 A 8 8
90 Dominican_Republic 27984 T 8 8
91 Dominican_Republic 27985 A 8 8
92 Dominican_Republic 27986 T 8 8
93 Dominican_Republic 27987 G 8 8
94 Dominican_Republic 27988 T 8 8
95 Dominican_Republic 27989 A 8 8
96 Dominican_Republic 27990 G 8 8
97 Dominican_Republic 27991 T 8 8
98 Dominican_Republic 27992 T 8 8
99 Dominican_Republic 27993 G 8 8
100 Dominican_Republic 27994 A 8 8
101 Dominican_Republic 27995 T 8 8
102 Dominican_Republic 27996 G 8 8
103 Dominican_Republic 27997 A 8 8
104 Dominican_Republic 27998 C 8 8
105 Dominican_Republic 27999 C 8 8
106 Dominican_Republic 28000 C 8 8
107 Dominican_Republic 28001 G 8 8
108 Dominican_Republic 28002 T 8 8
109 Dominican_Republic 28003 G 8 8
110 Dominican_Republic 28004 T 8 8
111 Dominican_Republic 28005 C 8 8
112 Dominican_Republic 28006 C 8 8
113 Dominican_Republic 28007 T 8 8
114 Dominican_Republic 28008 A 8 8
115 Dominican_Republic 28009 T 8 8
116 Dominican_Republic 28010 T 8 8
117 Dominican_Republic 28011 C 8 8
118 Dominican_Republic 28012 A 8 8
119 Dominican_Republic 28013 C 8 8
120 Dominican_Republic 28014 T 8 8
121 Dominican_Republic 28015 T 8 8
122 Dominican_Republic 28016 C 8 8
123 Dominican_Republic 28017 T 8 8
124 Dominican_Republic 28018 A 8 8
125 Dominican_Republic 28019 T 8 8
126 Dominican_Republic 28020 T 8 6
127 Dominican_Republic 28021 C 8 6
128 Dominican_Republic 28022 T 8 6
129 Dominican_Republic 28023 A 8 6
130 Dominican_Republic 28024 A 8 6
131 Dominican_Republic 28025 A 8 6
132 Dominican_Republic 28026 T 8 6
133 Dominican_Republic 28027 G 8 6
134 Dominican_Republic 28028 G 8 6
135 Dominican_Republic 28029 T 8 6
136 Dominican_Republic 28030 A 8 6
137 Dominican_Republic 28031 T 8 6
138 Dominican_Republic 28032 A 8 6
139 Dominican_Republic 28033 T 8 6
140 Dominican_Republic 28034 T 8 6
141 Dominican_Republic 28035 A 8 6
142 Dominican_Republic 28036 G 8 6
143 Dominican_Republic 28037 A 8 6
144 Dominican_Republic 28038 G 8 6
145 Dominican_Republic 28039 T 8 6
146 Dominican_Republic 28040 A 8 8
147 Dominican_Republic 28041 G 8 8
148 Dominican_Republic 28042 G 8 8
149 Dominican_Republic 28043 A 8 8
150 Dominican_Republic 28044 G 8 8
151 Dominican_Republic 28045 C 8 8
152 Dominican_Republic 28046 T 8 8
153 Dominican_Republic 28047 A 8 8
154 Dominican_Republic 28048 G 8 8
155 Dominican_Republic 28049 A 8 8
156 Dominican_Republic 28050 A 8 8
157 Dominican_Republic 28051 A 8 8
158 Dominican_Republic 28052 A 8 8
159 Dominican_Republic 28053 T 8 8
160 Dominican_Republic 28054 C 8 8
161 Dominican_Republic 28055 A 8 8
162 Dominican_Republic 28056 G 8 8
163 Dominican_Republic 28057 C 8 8
164 Dominican_Republic 28058 A 8 8
165 Dominican_Republic 28059 C 8 8
166 Dominican_Republic 28060 C 8 8
167 Dominican_Republic 28061 T 8 8
168 Dominican_Republic 28062 T 8 8
169 Dominican_Republic 28063 T 8 8
170 Dominican_Republic 28064 A 8 8
171 Dominican_Republic 28065 A 8 8
172 Dominican_Republic 28066 T 8 8
173 Dominican_Republic 28067 T 8 8
174 Dominican_Republic 28068 G 8 8
175 Dominican_Republic 28069 A 8 8
176 Dominican_Republic 28070 A 8 8
177 Dominican_Republic 28071 T 8 8
178 Dominican_Republic 28072 T 8 8
179 Dominican_Republic 28073 G 8 8
180 Dominican_Republic 28074 T 8 8
181 Dominican_Republic 28075 G 8 8
182 Dominican_Republic 28076 C 8 8
183 Dominican_Republic 28077 G 8 8
184 Dominican_Republic 28078 T 8 8
185 Dominican_Republic 28079 G 8 8
186 Dominican_Republic 28080 G 8 8
187 Dominican_Republic 28081 A 8 8
188 Dominican_Republic 28082 T 8 8
189 Dominican_Republic 28083 G 8 8
190 Dominican_Republic 28084 A 8 8
191 Dominican_Republic 28085 G 8 8
192 Dominican_Republic 28086 G 8 8
193 Dominican_Republic 28087 C 8 8
194 Dominican_Republic 28088 T 8 8
195 Dominican_Republic 28089 G 8 8
196 Dominican_Republic 28090 G 8 8
197 Dominican_Republic 28091 T 8 8
198 Dominican_Republic 28092 T 8 8
199 Dominican_Republic 28093 C 8 8
200 Dominican_Republic 28094 T 8 8
201 Dominican_Republic 28095 A 8 8
202 Dominican_Republic 28096 A 8 8
203 Dominican_Republic 28097 A 8 8
204 Dominican_Republic 28098 T 8 8
205 Dominican_Republic 28099 C 8 8
206 Dominican_Republic 28100 A 8 8
207 Dominican_Republic 28101 C 8 8
208 Dominican_Republic 28102 C A 8 7 Pro70His
209 Dominican_Republic 28103 C 8 8
210 Dominican_Republic 28104 A 8 8
211 Dominican_Republic 28105 T 8 8
212 Dominican_Republic 28106 T 8 8
213 Dominican_Republic 28107 C 8 8
214 Dominican_Republic 28108 A 8 8
215 Dominican_Republic 28109 G 8 8
216 Dominican_Republic 28110 T 8 8
217 Dominican_Republic 28111 A 8 8
218 Dominican_Republic 28112 C 8 8
219 Dominican_Republic 28113 A 8 8
220 Dominican_Republic 28114 T 8 8
221 Dominican_Republic 28115 C 8 8
222 Dominican_Republic 28116 G 8 8
223 Dominican_Republic 28117 A 8 8
224 Dominican_Republic 28118 T 8 8
225 Dominican_Republic 28119 A 8 8
226 Dominican_Republic 28120 T 8 8
227 Dominican_Republic 28121 C 8 8
228 Dominican_Republic 28122 G 8 8
229 Dominican_Republic 28123 G T 8 7 Gly77Val
230 Dominican_Republic 28124 T 8 8
231 Dominican_Republic 28125 A 8 8
232 Dominican_Republic 28126 A 8 8
233 Dominican_Republic 28127 T 8 8
234 Dominican_Republic 28128 T 8 8
235 Dominican_Republic 28129 A 8 8
236 Dominican_Republic 28130 T 8 8
237 Dominican_Republic 28131 A 8 8
238 Dominican_Republic 28132 C 8 8
239 Dominican_Republic 28133 A 8 8
240 Dominican_Republic 28134 G 8 8
241 Dominican_Republic 28135 T 8 8
242 Dominican_Republic 28136 T 8 8
243 Dominican_Republic 28137 T 8 8
244 Dominican_Republic 28138 C 8 8
245 Dominican_Republic 28139 C T 8 7 Ser82Ser
246 Dominican_Republic 28140 T 8 8
247 Dominican_Republic 28141 G 8 8
248 Dominican_Republic 28142 T C 8 7 Cys83Cys
249 Dominican_Republic 28143 T 8 8
250 Dominican_Republic 28144 T 8 8
251 Dominican_Republic 28145 A 8 8
252 Dominican_Republic 28146 C 8 8
253 Dominican_Republic 28147 C 8 8
254 Dominican_Republic 28148 T G 8 7 Pro85Pro
255 Dominican_Republic 28149 T 8 8
256 Dominican_Republic 28150 T 8 8
257 Dominican_Republic 28151 T 8 8
258 Dominican_Republic 28152 A C 8 7 Thr87Pro
259 Dominican_Republic 28153 C 8 8
260 Dominican_Republic 28154 A 8 8
261 Dominican_Republic 28155 A 8 8
262 Dominican_Republic 28156 T 8 8
263 Dominican_Republic 28157 T 8 8
264 Dominican_Republic 28158 A 8 8
265 Dominican_Republic 28159 A 8 8
266 Dominican_Republic 28160 T 8 8
267 Dominican_Republic 28161 T 8 8
268 Dominican_Republic 28162 G 8 8
269 Dominican_Republic 28163 C 8 7
270 Dominican_Republic 28164 C 8 7
271 Dominican_Republic 28165 A 8 7
272 Dominican_Republic 28166 G 8 7
273 Dominican_Republic 28167 G 8 7
274 Dominican_Republic 28168 A 8 7
275 Dominican_Republic 28169 A 8 7
276 Dominican_Republic 28170 C 8 7
277 Dominican_Republic 28171 C 8 7
278 Dominican_Republic 28172 T 8 7
279 Dominican_Republic 28173 A 8 7
280 Dominican_Republic 28174 A 8 7
281 Dominican_Republic 28175 A 8 7
282 Dominican_Republic 28176 T 8 7
283 Dominican_Republic 28177 T 8 7
284 Dominican_Republic 28178 G 8 7
285 Dominican_Republic 28179 G 8 7
286 Dominican_Republic 28180 G 8 7
287 Dominican_Republic 28181 T 8 7
288 Dominican_Republic 28182 A 8 7
289 Dominican_Republic 28183 G 8 7
290 Dominican_Republic 28184 T 8 7
291 Dominican_Republic 28185 C 8 7
292 Dominican_Republic 28186 T 8 7
293 Dominican_Republic 28187 T 8 7
294 Dominican_Republic 28188 G 8 7
295 Dominican_Republic 28189 T 8 7
296 Dominican_Republic 28190 A 8 7
297 Dominican_Republic 28191 G 8 7
298 Dominican_Republic 28192 T 8 8
299 Dominican_Republic 28193 G 8 8
300 Dominican_Republic 28194 C 8 8
301 Dominican_Republic 28195 G 8 8
302 Dominican_Republic 28196 T 8 8
303 Dominican_Republic 28197 T 8 8
304 Dominican_Republic 28198 G 8 8
305 Dominican_Republic 28199 T 8 8
306 Dominican_Republic 28200 T 8 8
307 Dominican_Republic 28201 C 8 8
308 Dominican_Republic 28202 G 8 8
309 Dominican_Republic 28203 T 8 8
310 Dominican_Republic 28204 T 8 8
311 Dominican_Republic 28205 C 8 8
312 Dominican_Republic 28206 T 8 8
313 Dominican_Republic 28207 A 8 8
314 Dominican_Republic 28208 T 8 8
315 Dominican_Republic 28209 G T 8 7 Glu106*
316 Dominican_Republic 28210 A C 8 7 Glu106Ala
317 Dominican_Republic 28211 A 8 8
318 Dominican_Republic 28212 G 8 8
319 Dominican_Republic 28213 A 8 8
320 Dominican_Republic 28214 C 8 8
321 Dominican_Republic 28215 T 8 8
322 Dominican_Republic 28216 T 8 8
323 Dominican_Republic 28217 T 8 8
324 Dominican_Republic 28218 T 8 8
325 Dominican_Republic 28219 T 8 8
326 Dominican_Republic 28220 A C 8 7 Leu109Phe
327 Dominican_Republic 28221 G 8 8
328 Dominican_Republic 28222 A C 8 7 Glu110Ala
329 Dominican_Republic 28223 G 8 8
330 Dominican_Republic 28224 T 8 8
331 Dominican_Republic 28225 A 8 8
332 Dominican_Republic 28226 T 8 8
333 Dominican_Republic 28227 C 8 8
334 Dominican_Republic 28228 A 8 8
335 Dominican_Republic 28229 T 8 8
336 Dominican_Republic 28230 G 8 8
337 Dominican_Republic 28231 A 8 8
338 Dominican_Republic 28232 C 8 8
339 Dominican_Republic 28233 G 8 8
340 Dominican_Republic 28234 T 8 8
341 Dominican_Republic 28235 T 8 8
342 Dominican_Republic 28236 C 8 8
343 Dominican_Republic 28237 G 8 8
344 Dominican_Republic 28238 T 8 8
345 Dominican_Republic 28239 G 8 8
346 Dominican_Republic 28240 T 8 8
347 Dominican_Republic 28241 T 8 8
348 Dominican_Republic 28242 G 8 8
349 Dominican_Republic 28243 T 8 8
350 Dominican_Republic 28244 T 8 8
351 Dominican_Republic 28245 T 8 8
352 Dominican_Republic 28246 T 8 8
353 Dominican_Republic 28247 A 8 8
354 Dominican_Republic 28248 G 8 8
355 Dominican_Republic 28249 A 8 8
356 Dominican_Republic 28250 T 8 8
357 Dominican_Republic 28251 T 8 8
358 Dominican_Republic 28252 T 8 8
359 Dominican_Republic 28253 C 8 8
360 Dominican_Republic 28254 A 8 8
361 Dominican_Republic 28255 T 8 8
362 Dominican_Republic 28256 C 8 8
363 Dominican_Republic 28257 T 8 8
364 Dominican_Republic 28258 A 8 8
365 Dominican_Republic 28259 A 8 8