National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*     2                                        
-     366                                        
?                                              
A     15                                        
C     21                                        
D     22                                        
E 1   18                                        
F     24                                        
G     15                                        
H     12                                        
I     30                                        
K     15                                        
L     30                                        
M     3                                        
N     6                                        
P     21                                        
Q     18                                        
R     12                                        
S     27                                        
T     15                                        
V     36                                        
W     3                   1                    
Y     21                                        

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Croatia 27894 A 46 46
1 Croatia 27895 T 46 46
2 Croatia 27896 G 46 46
3 Croatia 27897 A 46 46
4 Croatia 27898 A 46 46
5 Croatia 27899 A 46 46
6 Croatia 27900 T 46 46
7 Croatia 27901 T 46 46
8 Croatia 27902 T 46 46
9 Croatia 27903 C 46 46
10 Croatia 27904 T 46 46
11 Croatia 27905 T 46 46
12 Croatia 27906 G 46 46
13 Croatia 27907 T 46 46
14 Croatia 27908 T 46 46
15 Croatia 27909 T 46 46
16 Croatia 27910 T 46 46
17 Croatia 27911 C 46 46
18 Croatia 27912 T 46 46
19 Croatia 27913 T 46 46
20 Croatia 27914 A 46 46
21 Croatia 27915 G 46 46
22 Croatia 27916 G 46 46
23 Croatia 27917 A 46 46
24 Croatia 27918 A 46 46
25 Croatia 27919 T 46 46
26 Croatia 27920 C 46 46
27 Croatia 27921 A 46 46
28 Croatia 27922 T 46 46
29 Croatia 27923 C 46 46
30 Croatia 27924 A 46 46
31 Croatia 27925 C 46 46
32 Croatia 27926 A 46 46
33 Croatia 27927 A 46 46
34 Croatia 27928 C 46 46
35 Croatia 27929 T 46 46
36 Croatia 27930 G 46 46
37 Croatia 27931 T 46 46
38 Croatia 27932 A 46 46
39 Croatia 27933 G 46 46
40 Croatia 27934 C 46 46
41 Croatia 27935 T 46 46
42 Croatia 27936 G 46 46
43 Croatia 27937 C 46 46
44 Croatia 27938 A 46 46
45 Croatia 27939 T 46 46
46 Croatia 27940 T 46 46
47 Croatia 27941 T 46 46
48 Croatia 27942 C 46 46
49 Croatia 27943 A 46 46
50 Croatia 27944 C 46 46
51 Croatia 27945 C 46 46
52 Croatia 27946 A 46 46
53 Croatia 27947 A 46 46
54 Croatia 27948 G 46 46
55 Croatia 27949 A 50 50
56 Croatia 27950 A 50 50
57 Croatia 27951 T 50 50
58 Croatia 27952 G 50 50
59 Croatia 27953 T 50 50
60 Croatia 27954 A 50 50
61 Croatia 27955 G 50 50
62 Croatia 27956 T 50 50
63 Croatia 27957 T 50 50
64 Croatia 27958 T 50 50
65 Croatia 27959 A 50 50
66 Croatia 27960 C 50 50
67 Croatia 27961 A 50 50
68 Croatia 27962 G 50 50
69 Croatia 27963 T 50 50
70 Croatia 27964 C 50 50
71 Croatia 27965 A 50 50
72 Croatia 27966 T 50 50
73 Croatia 27967 G 50 50
74 Croatia 27968 T 50 50
75 Croatia 27969 A 50 50
76 Croatia 27970 C 50 50
77 Croatia 27971 T 50 50
78 Croatia 27972 C 50 50
79 Croatia 27973 A 50 50
80 Croatia 27974 A 50 50
81 Croatia 27975 C 50 50
82 Croatia 27976 A 50 50
83 Croatia 27977 T 50 50
84 Croatia 27978 C 50 50
85 Croatia 27979 A 50 50
86 Croatia 27980 A 50 50
87 Croatia 27981 C 50 50
88 Croatia 27982 C 50 50
89 Croatia 27983 A 50 50
90 Croatia 27984 T 50 50
91 Croatia 27985 A 50 50
92 Croatia 27986 T 50 50
93 Croatia 27987 G 50 50
94 Croatia 27988 T 50 50
95 Croatia 27989 A 50 50
96 Croatia 27990 G 50 50
97 Croatia 27991 T 50 50
98 Croatia 27992 T 50 50
99 Croatia 27993 G 50 50
100 Croatia 27994 A 50 50
101 Croatia 27995 T 50 50
102 Croatia 27996 G 50 50
103 Croatia 27997 A 50 50
104 Croatia 27998 C 50 50
105 Croatia 27999 C 50 50
106 Croatia 28000 C 50 50
107 Croatia 28001 G 50 50
108 Croatia 28002 T 50 50
109 Croatia 28003 G 50 50
110 Croatia 28004 T 50 50
111 Croatia 28005 C 50 50
112 Croatia 28006 C 50 50
113 Croatia 28007 T 50 50
114 Croatia 28008 A 50 50
115 Croatia 28009 T 50 50
116 Croatia 28010 T 50 50
117 Croatia 28011 C 50 50
118 Croatia 28012 A 50 50
119 Croatia 28013 C 50 50
120 Croatia 28014 T 50 50
121 Croatia 28015 T 50 50
122 Croatia 28016 C 50 50
123 Croatia 28017 T 50 50
124 Croatia 28018 A 50 50
125 Croatia 28019 T 50 50
126 Croatia 28020 T 50 50
127 Croatia 28021 C 50 50
128 Croatia 28022 T 50 50
129 Croatia 28023 A 50 50
130 Croatia 28024 A 50 50
131 Croatia 28025 A 50 50
132 Croatia 28026 T 50 50
133 Croatia 28027 G T 50 49 Trp45Leu
134 Croatia 28028 G 50 50
135 Croatia 28029 T 50 50
136 Croatia 28030 A 50 50
137 Croatia 28031 T 50 50
138 Croatia 28032 A 50 50
139 Croatia 28033 T 50 50
140 Croatia 28034 T 50 50
141 Croatia 28035 A 50 50
142 Croatia 28036 G 50 50
143 Croatia 28037 A 50 50
144 Croatia 28038 G 50 50
145 Croatia 28039 T 50 50
146 Croatia 28040 A 50 50
147 Croatia 28041 G 50 50
148 Croatia 28042 G 50 50
149 Croatia 28043 A 50 50
150 Croatia 28044 G 50 50
151 Croatia 28045 C 50 50
152 Croatia 28046 T 50 50
153 Croatia 28047 A 50 50
154 Croatia 28048 G 50 50
155 Croatia 28049 A 50 50
156 Croatia 28050 A 50 50
157 Croatia 28051 A 50 50
158 Croatia 28052 A 50 50
159 Croatia 28053 T 50 50
160 Croatia 28054 C 50 50
161 Croatia 28055 A 50 50
162 Croatia 28056 G 50 50
163 Croatia 28057 C 50 50
164 Croatia 28058 A 50 50
165 Croatia 28059 C 50 50
166 Croatia 28060 C 50 50
167 Croatia 28061 T 50 50
168 Croatia 28062 T 50 50
169 Croatia 28063 T 50 50
170 Croatia 28064 A 50 50
171 Croatia 28065 A 50 50
172 Croatia 28066 T 50 50
173 Croatia 28067 T 50 50
174 Croatia 28068 G 50 50
175 Croatia 28069 A 50 50
176 Croatia 28070 A 50 50
177 Croatia 28071 T 50 50
178 Croatia 28072 T 50 50
179 Croatia 28073 G 50 50
180 Croatia 28074 T 50 50
181 Croatia 28075 G 50 50
182 Croatia 28076 C 50 50
183 Croatia 28077 G 50 50
184 Croatia 28078 T 50 50
185 Croatia 28079 G 50 50
186 Croatia 28080 G 50 50
187 Croatia 28081 A 50 50
188 Croatia 28082 T 50 50
189 Croatia 28083 G 50 50
190 Croatia 28084 A 50 50
191 Croatia 28085 G 50 50
192 Croatia 28086 G 50 50
193 Croatia 28087 C 50 50
194 Croatia 28088 T 50 50
195 Croatia 28089 G 50 50
196 Croatia 28090 G 50 50
197 Croatia 28091 T 50 50
198 Croatia 28092 T 50 50
199 Croatia 28093 C 50 50
200 Croatia 28094 T 50 50
201 Croatia 28095 A 50 50
202 Croatia 28096 A 50 50
203 Croatia 28097 A 50 50
204 Croatia 28098 T 50 50
205 Croatia 28099 C 50 50
206 Croatia 28100 A 50 50
207 Croatia 28101 C 50 50
208 Croatia 28102 C 50 50
209 Croatia 28103 C 50 50
210 Croatia 28104 A 50 50
211 Croatia 28105 T 50 50
212 Croatia 28106 T 50 50
213 Croatia 28107 C 50 50
214 Croatia 28108 A 50 50
215 Croatia 28109 G 50 50
216 Croatia 28110 T 50 50
217 Croatia 28111 A 50 50
218 Croatia 28112 C 50 50
219 Croatia 28113 A 50 50
220 Croatia 28114 T 50 50
221 Croatia 28115 C 50 50
222 Croatia 28116 G 50 50
223 Croatia 28117 A 50 50
224 Croatia 28118 T 50 50
225 Croatia 28119 A 50 50
226 Croatia 28120 T 50 50
227 Croatia 28121 C 50 50
228 Croatia 28122 G 50 50
229 Croatia 28123 G 50 50
230 Croatia 28124 T 50 50
231 Croatia 28125 A 50 50
232 Croatia 28126 A 50 50
233 Croatia 28127 T 50 50
234 Croatia 28128 T 50 50
235 Croatia 28129 A 50 50
236 Croatia 28130 T 50 50
237 Croatia 28131 A 50 50
238 Croatia 28132 C 50 50
239 Croatia 28133 A 50 50
240 Croatia 28134 G 50 50
241 Croatia 28135 T 50 50
242 Croatia 28136 T 50 50
243 Croatia 28137 T 50 50
244 Croatia 28138 C 50 50
245 Croatia 28139 C 50 50
246 Croatia 28140 T 50 50
247 Croatia 28141 G 50 50
248 Croatia 28142 T 50 50
249 Croatia 28143 T 50 50
250 Croatia 28144 T 50 50
251 Croatia 28145 A 50 50
252 Croatia 28146 C 50 50
253 Croatia 28147 C 50 50
254 Croatia 28148 T 50 50
255 Croatia 28149 T 50 50
256 Croatia 28150 T 50 50
257 Croatia 28151 T 50 50
258 Croatia 28152 A 50 50
259 Croatia 28153 C 50 50
260 Croatia 28154 A 50 50
261 Croatia 28155 A 50 50
262 Croatia 28156 T 50 50
263 Croatia 28157 T 50 50
264 Croatia 28158 A 50 50
265 Croatia 28159 A 50 50
266 Croatia 28160 T 50 50
267 Croatia 28161 T 50 50
268 Croatia 28162 G 50 50
269 Croatia 28163 C 50 50
270 Croatia 28164 C 50 50
271 Croatia 28165 A 50 50
272 Croatia 28166 G 50 50
273 Croatia 28167 G 50 50
274 Croatia 28168 A 50 50
275 Croatia 28169 A 50 50
276 Croatia 28170 C 50 50
277 Croatia 28171 C 50 50
278 Croatia 28172 T 50 50
279 Croatia 28173 A 50 50
280 Croatia 28174 A 50 50
281 Croatia 28175 A 50 50
282 Croatia 28176 T 50 50
283 Croatia 28177 T 50 50
284 Croatia 28178 G 50 50
285 Croatia 28179 G 50 50
286 Croatia 28180 G 50 50
287 Croatia 28181 T 50 50
288 Croatia 28182 A 50 50
289 Croatia 28183 G 50 50
290 Croatia 28184 T 50 50
291 Croatia 28185 C 50 50
292 Croatia 28186 T 50 50
293 Croatia 28187 T 50 50
294 Croatia 28188 G 50 50
295 Croatia 28189 T 50 50
296 Croatia 28190 A 50 50
297 Croatia 28191 G 50 50
298 Croatia 28192 T 50 50
299 Croatia 28193 G 50 50
300 Croatia 28194 C 50 50
301 Croatia 28195 G 50 50
302 Croatia 28196 T 50 50
303 Croatia 28197 T 50 50
304 Croatia 28198 G 50 50
305 Croatia 28199 T 50 50
306 Croatia 28200 T 50 50
307 Croatia 28201 C 50 50
308 Croatia 28202 G 50 50
309 Croatia 28203 T 50 50
310 Croatia 28204 T 50 50
311 Croatia 28205 C 50 50
312 Croatia 28206 T 50 50
313 Croatia 28207 A 50 50
314 Croatia 28208 T 50 50
315 Croatia 28209 G T 50 49 Glu106*
316 Croatia 28210 A 50 50
317 Croatia 28211 A 50 50
318 Croatia 28212 G 50 50
319 Croatia 28213 A 50 50
320 Croatia 28214 C 50 50
321 Croatia 28215 T 50 50
322 Croatia 28216 T 50 50
323 Croatia 28217 T 50 50
324 Croatia 28218 T 50 50
325 Croatia 28219 T 50 50
326 Croatia 28220 A 50 50
327 Croatia 28221 G 50 50
328 Croatia 28222 A 50 50
329 Croatia 28223 G 50 50
330 Croatia 28224 T 50 50
331 Croatia 28225 A 50 50
332 Croatia 28226 T 50 50
333 Croatia 28227 C 50 50
334 Croatia 28228 A 50 50
335 Croatia 28229 T 50 50
336 Croatia 28230 G 50 50
337 Croatia 28231 A 50 50
338 Croatia 28232 C 50 50
339 Croatia 28233 G 50 50
340 Croatia 28234 T 50 50
341 Croatia 28235 T 50 50
342 Croatia 28236 C 50 50
343 Croatia 28237 G 50 50
344 Croatia 28238 T 49 49
345 Croatia 28239 G 49 49
346 Croatia 28240 T 49 49
347 Croatia 28241 T 49 49
348 Croatia 28242 G 49 49
349 Croatia 28243 T 49 49
350 Croatia 28244 T 49 49
351 Croatia 28245 T 49 49
352 Croatia 28246 T 49 48
353 Croatia 28247 A 49 49
354 Croatia 28248 G 49 48
355 Croatia 28249 A 49 48
356 Croatia 28250 T 49 49
357 Croatia 28251 T 49 48
358 Croatia 28252 T 49 49
359 Croatia 28253 C 49 48
360 Croatia 28254 A 49 48
361 Croatia 28255 T 49 49
362 Croatia 28256 C 49 49
363 Croatia 28257 T 49 49
364 Croatia 28258 A 49 49
365 Croatia 28259 A 49 49